Wall clock time and date at job start Tue Mar 31 2020 14:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.46999 * 2 1 4 4 C 1.34740 * 116.99742 * 180.02562 * 3 2 1 5 5 O 1.21486 * 120.00217 * 0.02562 * 4 3 2 6 6 C 1.47582 * 120.00059 * 179.97438 * 4 3 2 7 7 C 1.39503 * 120.20981 * 356.01399 * 6 4 3 8 8 C 1.37984 * 119.96701 * 180.27450 * 7 6 4 9 9 C 1.38501 * 120.40455 * 359.72392 * 8 7 6 10 10 C 1.50698 * 119.78366 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47577 * 270.02447 * 10 9 8 12 12 C 1.38083 * 120.43004 * 0.02562 * 9 8 7 13 13 C 1.39182 * 120.02531 * 359.97438 * 12 9 8 14 14 C 1.48185 * 120.20320 * 180.02562 * 13 12 9 15 15 C 1.39928 * 119.61143 * 280.19407 * 14 13 12 16 16 C 1.38713 * 119.45423 * 180.02562 * 15 14 13 17 17 C 1.38264 * 118.69012 * 359.72742 * 16 15 14 18 18 C 1.40720 * 119.19723 * 0.53285 * 17 16 15 19 19 C 1.41392 * 119.76822 * 179.72994 * 18 17 16 20 20 H 1.08001 * 119.99761 * 344.30585 * 19 18 17 21 21 C 1.40020 * 120.00411 * 164.30209 * 19 18 17 22 22 N 1.30739 * 119.99826 * 334.25771 * 21 19 18 23 23 Si 1.86801 * 119.99760 * 153.97114 * 21 19 18 24 24 H 1.48509 * 109.46798 * 180.27776 * 23 21 19 25 25 H 1.48493 * 109.47439 * 300.27817 * 23 21 19 26 26 H 1.48501 * 109.46806 * 60.28480 * 23 21 19 27 27 N 1.32273 * 119.61014 * 100.21778 * 14 13 12 28 28 H 1.08999 * 109.47273 * 59.99967 * 1 2 3 29 29 H 1.08995 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46797 * 300.00447 * 1 2 3 31 31 H 1.08996 * 109.47424 * 239.99774 * 2 1 3 32 32 H 1.09002 * 109.46961 * 119.99337 * 2 1 3 33 33 H 1.07997 * 120.01869 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.79936 * 179.70213 * 8 7 6 35 35 H 1.09000 * 109.46969 * 30.02815 * 10 9 8 36 36 H 1.08999 * 109.47117 * 150.02039 * 10 9 8 37 37 H 1.09001 * 109.47255 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47272 * 300.00183 * 11 10 9 39 39 H 1.09005 * 109.47118 * 60.00112 * 11 10 9 40 40 H 1.08003 * 119.98862 * 179.97438 * 12 9 8 41 41 H 1.07996 * 120.26804 * 0.04571 * 15 14 13 42 42 H 1.07998 * 120.65056 * 179.97438 * 16 15 14 43 43 H 1.08009 * 120.40488 * 180.29051 * 17 16 15 44 44 H 0.96997 * 120.00528 * 2.88439 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5455 -0.0005 5 8 4.0898 0.5821 -0.0015 6 6 3.9139 2.9092 -0.0011 7 6 3.0708 4.0176 -0.0850 8 6 3.6040 5.2902 -0.0908 9 6 4.9739 5.4767 -0.0082 10 6 5.5412 6.8728 -0.0163 11 6 5.8258 7.2993 -1.4578 12 6 5.8233 4.3916 0.0806 13 6 5.3048 3.1000 0.0881 14 6 6.2127 1.9328 0.1838 15 6 6.8831 1.4827 -0.9590 16 6 7.7318 0.3895 -0.8658 17 6 7.8939 -0.2220 0.3636 18 6 7.1879 0.2737 1.4753 19 6 7.3403 -0.3459 2.7371 20 1 7.7820 -1.3291 2.8059 21 6 6.9187 0.3150 3.8972 22 7 6.8630 1.6210 3.9219 23 14 6.4282 -0.6696 5.4070 24 1 6.0173 0.2585 6.4912 25 1 5.2944 -1.5660 5.0666 26 1 7.5832 -1.4837 5.8637 27 7 6.3794 1.3282 1.3484 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.0017 3.8795 -0.1493 34 1 2.9492 6.1462 -0.1607 35 1 4.8225 7.5596 0.4307 36 1 6.4675 6.8919 0.5579 37 1 6.2357 8.3093 -1.4637 38 1 6.5445 6.6125 -1.9048 39 1 4.8994 7.2802 -2.0320 40 1 6.8905 4.5452 0.1444 41 1 6.7412 1.9827 -1.9057 42 1 8.2585 0.0256 -1.7356 43 1 8.5516 -1.0724 0.4687 44 1 7.0735 2.1306 3.1239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245786285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:47 Heat of formation + Delta-G solvation = -50.479356 kcal Electronic energy + Delta-G solvation = -27486.206166 eV Core-core repulsion = 23753.494314 eV Total energy + Delta-G solvation = -3732.711853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25665 -38.93514 -37.97585 -36.10517 -34.24354 -33.66327 -31.90818 -31.46613 -30.31518 -29.65374 -28.79058 -25.44552 -24.84419 -23.28615 -22.89534 -21.79643 -21.30129 -20.94946 -19.68819 -17.98542 -17.57395 -16.49238 -16.18999 -15.55230 -15.25060 -14.77780 -14.62842 -14.35484 -14.07229 -13.88148 -13.85304 -13.55894 -13.42505 -13.04722 -12.75840 -12.64619 -12.27235 -12.25797 -11.95386 -11.80140 -11.54262 -11.47429 -11.43049 -11.23387 -11.06711 -10.99031 -10.85214 -10.52492 -10.33045 -10.24558 -9.92321 -9.79424 -8.88561 -8.67871 -8.54228 -8.33509 -7.88918 -7.53754 -6.90794 -4.47887 1.01590 1.58568 2.71042 2.93937 2.95094 3.02858 3.21042 3.32713 3.43047 4.03217 4.10133 4.67891 4.77533 4.86661 4.96447 5.02504 5.07395 5.11846 5.22093 5.31869 5.37562 5.44410 5.52968 5.59615 5.75613 5.79744 5.83469 5.85701 5.90652 5.96249 6.02909 6.08903 6.16845 6.22344 6.38523 6.48500 6.63781 6.69475 6.74388 6.83693 6.87260 7.03933 7.19272 7.52764 7.69907 7.87308 7.95605 8.15530 8.28580 8.75406 8.91308 9.88308 10.26370 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008284 B = 0.005371 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.322346 B = 5211.725771 C = 6609.914893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.363 6.363 4 C 0.497 3.503 5 O -0.462 6.462 6 C -0.113 4.113 7 C -0.064 4.064 8 C -0.141 4.141 9 C -0.051 4.051 10 C -0.087 4.087 11 C -0.146 4.146 12 C -0.112 4.112 13 C 0.060 3.940 14 C 0.205 3.795 15 C -0.300 4.300 16 C -0.047 4.047 17 C -0.274 4.274 18 C 0.258 3.742 19 C -0.496 4.496 20 H 0.080 0.920 21 C 0.042 3.958 22 N -0.762 5.762 23 Si 1.068 2.932 24 H -0.274 1.274 25 H -0.276 1.276 26 H -0.277 1.277 27 N -0.526 5.526 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 7.341 -7.001 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.282 6.282 4 C 0.339 3.661 5 O -0.346 6.346 6 C -0.115 4.115 7 C -0.082 4.082 8 C -0.159 4.159 9 C -0.051 4.051 10 C -0.125 4.125 11 C -0.204 4.204 12 C -0.131 4.131 13 C 0.059 3.941 14 C 0.060 3.940 15 C -0.323 4.323 16 C -0.071 4.071 17 C -0.297 4.297 18 C 0.135 3.865 19 C -0.527 4.527 20 H 0.098 0.902 21 C -0.186 4.186 22 N -0.385 5.385 23 Si 0.892 3.108 24 H -0.199 1.199 25 H -0.201 1.201 26 H -0.203 1.203 27 N -0.241 5.241 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.148 0.852 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.614 7.452 -4.672 13.030 hybrid contribution 0.941 -0.817 -2.506 2.799 sum -8.673 6.635 -7.178 13.068 Atomic orbital electron populations 1.21779 0.92942 1.02671 1.03206 1.22931 0.94838 0.80591 1.02708 1.86486 1.24471 1.31910 1.85327 1.21075 0.80345 0.90263 0.74370 1.90984 1.59381 1.41744 1.42541 1.19077 0.92846 0.90215 1.09329 1.21284 0.99663 0.91452 0.95832 1.20902 0.94460 0.96746 1.03775 1.20013 0.93475 0.95253 0.96356 1.20597 1.01451 0.92462 0.97951 1.21746 1.01925 1.00999 0.95686 1.20993 1.00124 0.90289 1.01646 1.18805 0.90703 0.93240 0.91333 1.19115 0.92301 0.91766 0.90835 1.20815 1.09572 1.04636 0.97283 1.20723 0.95777 0.94454 0.96111 1.21668 1.07877 1.05602 0.94517 1.18416 0.87131 0.87983 0.92963 1.20491 1.36448 1.04476 0.91255 0.90166 1.26900 0.92495 0.96236 1.02991 1.70232 1.26404 1.07296 1.34557 0.83618 0.77594 0.75472 0.74150 1.19866 1.20149 1.20306 1.68183 1.20457 1.12238 1.23271 0.91737 0.90473 0.91563 0.91519 0.91177 0.84785 0.85628 0.90805 0.90631 0.92428 0.92325 0.92545 0.85231 0.88964 0.88537 0.88413 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 37.16 0.38 -1.17 16 2 C 0.06 0.94 6.20 37.16 0.23 1.17 16 3 O -0.36 -6.37 9.48 -40.60 -0.38 -6.75 16 4 C 0.50 10.50 7.86 34.54 0.27 10.77 16 5 O -0.46 -11.55 13.75 -19.25 -0.26 -11.81 16 6 C -0.11 -2.23 5.90 -104.69 -0.62 -2.85 16 7 C -0.06 -0.99 9.61 -39.20 -0.38 -1.37 16 8 C -0.14 -1.90 9.67 -39.58 -0.38 -2.28 16 9 C -0.05 -0.73 5.14 -104.58 -0.54 -1.26 16 10 C -0.09 -0.95 6.05 -27.89 -0.17 -1.12 16 11 C -0.15 -1.39 9.89 37.16 0.37 -1.02 16 12 C -0.11 -1.99 9.41 -39.29 -0.37 -2.36 16 13 C 0.06 1.29 5.50 -104.54 -0.57 0.71 16 14 C 0.20 5.13 3.81 -82.96 -0.32 4.81 16 15 C -0.30 -7.18 9.79 -38.77 -0.38 -7.56 16 16 C -0.05 -1.12 10.15 -39.40 -0.40 -1.52 16 17 C -0.27 -7.19 9.83 -38.63 -0.38 -7.57 16 18 C 0.26 7.42 6.22 -85.01 -0.53 6.89 16 19 C -0.50 -14.06 9.03 -37.71 -0.34 -14.40 16 20 H 0.08 2.16 7.97 -52.49 -0.42 1.74 16 21 C 0.04 1.13 5.24 -17.35 -0.09 1.04 16 22 N -0.76 -21.78 13.26 55.55 0.74 -21.04 16 23 Si 1.07 22.99 30.01 -169.99 -5.10 17.89 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 27 N -0.53 -14.82 7.01 -7.69 -0.05 -14.88 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.13 1.75 7.61 -52.49 -0.40 1.35 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 41 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 42 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 43 H 0.10 2.39 8.06 -52.48 -0.42 1.97 16 44 H 0.31 9.21 6.33 -40.82 -0.26 8.95 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -33.45 377.90 -9.79 -43.24 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.21 Total: 6.73 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -4.21 Total: -19.08 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.68 Total: -35.92 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.65 Total: -18.57 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.10 Total: 17.89 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.45 -9.79 -43.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245786285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.238 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds