Wall clock time and date at job start Tue Mar 31 2020 14:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.46999 * 2 1 4 4 C 1.34740 * 116.99742 * 180.02562 * 3 2 1 5 5 O 1.21486 * 120.00217 * 0.02562 * 4 3 2 6 6 C 1.47582 * 120.00059 * 179.97438 * 4 3 2 7 7 C 1.39503 * 120.20981 * 356.01399 * 6 4 3 8 8 C 1.37984 * 119.96701 * 180.27450 * 7 6 4 9 9 C 1.38501 * 120.40455 * 359.72392 * 8 7 6 10 10 C 1.50698 * 119.78366 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47577 * 270.02447 * 10 9 8 12 12 C 1.38083 * 120.43004 * 0.02562 * 9 8 7 13 13 C 1.39182 * 120.02531 * 359.97438 * 12 9 8 14 14 C 1.48185 * 120.20320 * 180.02562 * 13 12 9 15 15 C 1.39928 * 119.61143 * 280.19407 * 14 13 12 16 16 C 1.38713 * 119.45423 * 180.02562 * 15 14 13 17 17 C 1.38264 * 118.69012 * 359.72742 * 16 15 14 18 18 C 1.40720 * 119.19723 * 0.53285 * 17 16 15 19 19 C 1.41392 * 119.76822 * 179.72994 * 18 17 16 20 20 H 1.08001 * 119.99761 * 344.30585 * 19 18 17 21 21 C 1.40020 * 120.00411 * 164.30209 * 19 18 17 22 22 N 1.30739 * 119.99826 * 334.25771 * 21 19 18 23 23 Si 1.86801 * 119.99760 * 153.97114 * 21 19 18 24 24 H 1.48509 * 109.46798 * 180.27776 * 23 21 19 25 25 H 1.48493 * 109.47439 * 300.27817 * 23 21 19 26 26 H 1.48501 * 109.46806 * 60.28480 * 23 21 19 27 27 N 1.32273 * 119.61014 * 100.21778 * 14 13 12 28 28 H 1.08999 * 109.47273 * 59.99967 * 1 2 3 29 29 H 1.08995 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46797 * 300.00447 * 1 2 3 31 31 H 1.08996 * 109.47424 * 239.99774 * 2 1 3 32 32 H 1.09002 * 109.46961 * 119.99337 * 2 1 3 33 33 H 1.07997 * 120.01869 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.79936 * 179.70213 * 8 7 6 35 35 H 1.09000 * 109.46969 * 30.02815 * 10 9 8 36 36 H 1.08999 * 109.47117 * 150.02039 * 10 9 8 37 37 H 1.09001 * 109.47255 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47272 * 300.00183 * 11 10 9 39 39 H 1.09005 * 109.47118 * 60.00112 * 11 10 9 40 40 H 1.08003 * 119.98862 * 179.97438 * 12 9 8 41 41 H 1.07996 * 120.26804 * 0.04571 * 15 14 13 42 42 H 1.07998 * 120.65056 * 179.97438 * 16 15 14 43 43 H 1.08009 * 120.40488 * 180.29051 * 17 16 15 44 44 H 0.96997 * 120.00528 * 2.88439 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3497 1.5455 -0.0005 5 8 4.0898 0.5821 -0.0015 6 6 3.9139 2.9092 -0.0011 7 6 3.0708 4.0176 -0.0850 8 6 3.6040 5.2902 -0.0908 9 6 4.9739 5.4767 -0.0082 10 6 5.5412 6.8728 -0.0163 11 6 5.8258 7.2993 -1.4578 12 6 5.8233 4.3916 0.0806 13 6 5.3048 3.1000 0.0881 14 6 6.2127 1.9328 0.1838 15 6 6.8831 1.4827 -0.9590 16 6 7.7318 0.3895 -0.8658 17 6 7.8939 -0.2220 0.3636 18 6 7.1879 0.2737 1.4753 19 6 7.3403 -0.3459 2.7371 20 1 7.7820 -1.3291 2.8059 21 6 6.9187 0.3150 3.8972 22 7 6.8630 1.6210 3.9219 23 14 6.4282 -0.6696 5.4070 24 1 6.0173 0.2585 6.4912 25 1 5.2944 -1.5660 5.0666 26 1 7.5832 -1.4837 5.8637 27 7 6.3794 1.3282 1.3484 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.0017 3.8795 -0.1493 34 1 2.9492 6.1462 -0.1607 35 1 4.8225 7.5596 0.4307 36 1 6.4675 6.8919 0.5579 37 1 6.2357 8.3093 -1.4637 38 1 6.5445 6.6125 -1.9048 39 1 4.8994 7.2802 -2.0320 40 1 6.8905 4.5452 0.1444 41 1 6.7412 1.9827 -1.9057 42 1 8.2585 0.0256 -1.7356 43 1 8.5516 -1.0724 0.4687 44 1 7.0735 2.1306 3.1239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245786285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:46 Heat of formation + Delta-G solvation = -68.097384 kcal Electronic energy + Delta-G solvation = -27486.970141 eV Core-core repulsion = 23753.494314 eV Total energy + Delta-G solvation = -3733.475828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77226 -40.47901 -39.68740 -37.64433 -35.87621 -35.16578 -33.44594 -32.64263 -32.25084 -30.91433 -30.41459 -27.38728 -26.13302 -24.70175 -24.11620 -23.31239 -22.95577 -22.51282 -21.17565 -19.91314 -19.05027 -17.98062 -17.61411 -17.09300 -16.80104 -16.46263 -16.37934 -15.82983 -15.60553 -15.35821 -15.21048 -14.72243 -14.58538 -14.33874 -14.19078 -14.09965 -13.81213 -13.64952 -13.48508 -13.31689 -12.98803 -12.81383 -12.72472 -12.62622 -12.57222 -12.30619 -12.05393 -12.00353 -11.78635 -11.63364 -11.59347 -11.54200 -10.88208 -10.35523 -10.15300 -9.89619 -9.75588 -9.52245 -8.99479 -6.62032 -0.37083 0.26693 0.75457 0.97690 1.44564 1.48799 1.59902 1.60874 1.75819 2.29534 2.67207 2.72717 3.41968 3.55013 3.70000 3.78403 3.91673 3.92138 4.04246 4.19935 4.21525 4.25767 4.27787 4.43028 4.52944 4.54928 4.58230 4.71274 4.75946 4.79596 4.87562 4.89324 4.96642 5.06036 5.07784 5.11986 5.13815 5.27185 5.31611 5.41632 5.43296 5.51585 5.54682 5.69182 5.75206 5.83037 5.88891 6.12461 6.69104 6.73370 6.84363 7.86910 8.10537 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008284 B = 0.005371 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.322346 B = 5211.725771 C = 6609.914893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.494 3.506 5 O -0.517 6.517 6 C -0.143 4.143 7 C -0.052 4.052 8 C -0.123 4.123 9 C -0.036 4.036 10 C -0.086 4.086 11 C -0.144 4.144 12 C -0.126 4.126 13 C 0.020 3.980 14 C 0.200 3.800 15 C -0.302 4.302 16 C -0.045 4.045 17 C -0.303 4.303 18 C 0.230 3.770 19 C -0.536 4.536 20 H 0.081 0.919 21 C 0.005 3.995 22 N -0.788 5.788 23 Si 1.120 2.880 24 H -0.267 1.267 25 H -0.273 1.273 26 H -0.249 1.249 27 N -0.552 5.552 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.162 0.838 34 H 0.176 0.824 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.105 0.895 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 9.731 -7.741 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.339 3.661 5 O -0.406 6.406 6 C -0.145 4.145 7 C -0.070 4.070 8 C -0.140 4.140 9 C -0.036 4.036 10 C -0.123 4.123 11 C -0.201 4.201 12 C -0.144 4.144 13 C 0.019 3.981 14 C 0.056 3.944 15 C -0.325 4.325 16 C -0.069 4.069 17 C -0.325 4.325 18 C 0.105 3.895 19 C -0.567 4.567 20 H 0.099 0.901 21 C -0.217 4.217 22 N -0.410 5.410 23 Si 0.936 3.064 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.173 1.173 27 N -0.268 5.268 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.180 0.820 34 H 0.194 0.806 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.152 0.848 43 H 0.124 0.876 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.010 9.865 -5.449 16.470 hybrid contribution 1.617 -1.424 -2.500 3.300 sum -10.394 8.441 -7.949 15.571 Atomic orbital electron populations 1.21791 0.88855 1.04574 1.04145 1.23262 0.97884 0.79251 1.01577 1.86484 1.22549 1.33443 1.84535 1.21559 0.81041 0.90538 0.72930 1.90948 1.60686 1.43451 1.45468 1.19213 0.92758 0.90802 1.11733 1.21631 1.00495 0.90875 0.94015 1.21458 0.94519 0.97383 1.00688 1.20450 0.93753 0.95908 0.93539 1.20717 1.01950 0.90497 0.99185 1.21737 1.02186 1.01714 0.94455 1.21050 1.00494 0.90199 1.02692 1.18848 0.91181 0.93124 0.94987 1.19759 0.92153 0.92395 0.90134 1.21268 1.08712 1.04367 0.98147 1.21154 0.95335 0.93825 0.96555 1.21859 1.08764 1.06674 0.95172 1.18882 0.87737 0.88758 0.94074 1.20761 1.38679 1.05022 0.92244 0.90107 1.28462 0.90930 0.96373 1.05886 1.70340 1.28983 1.08059 1.33641 0.83012 0.78282 0.74426 0.70660 1.19130 1.19792 1.17297 1.68187 1.20877 1.12576 1.25133 0.90247 0.88087 0.91067 0.91870 0.93317 0.82010 0.80637 0.87935 0.91024 0.90416 0.93818 0.91549 0.85994 0.86617 0.84757 0.87639 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.29 71.98 0.74 -1.85 16 2 C 0.05 1.62 6.20 71.98 0.45 2.06 16 3 O -0.35 -12.37 9.48 -56.50 -0.54 -12.90 16 4 C 0.49 21.56 7.86 70.29 0.55 22.11 16 5 O -0.52 -27.35 13.75 19.88 0.27 -27.08 16 6 C -0.14 -5.69 5.90 -19.91 -0.12 -5.81 16 7 C -0.05 -1.48 9.61 22.51 0.22 -1.26 16 8 C -0.12 -2.79 9.67 22.27 0.22 -2.57 16 9 C -0.04 -0.95 5.14 -19.84 -0.10 -1.05 16 10 C -0.09 -1.57 6.05 29.85 0.18 -1.39 16 11 C -0.14 -2.22 9.89 71.98 0.71 -1.51 16 12 C -0.13 -4.49 9.41 22.46 0.21 -4.28 16 13 C 0.02 0.87 5.50 -19.81 -0.11 0.76 16 14 C 0.20 10.49 3.81 42.13 0.16 10.65 16 15 C -0.30 -14.90 9.79 22.79 0.22 -14.68 16 16 C -0.04 -2.19 10.15 22.39 0.23 -1.96 16 17 C -0.30 -16.66 9.83 22.88 0.22 -16.43 16 18 C 0.23 14.00 6.22 40.28 0.25 14.25 16 19 C -0.54 -32.17 9.03 23.48 0.21 -31.95 16 20 H 0.08 4.61 7.97 -2.91 -0.02 4.59 16 21 C 0.00 0.27 5.24 85.29 0.45 0.72 16 22 N -0.79 -47.26 13.26 21.84 0.29 -46.97 16 23 Si 1.12 47.48 30.01 68.60 2.06 49.54 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 27 N -0.55 -32.99 7.01 -178.26 -1.25 -34.24 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.16 3.61 7.61 -2.91 -0.02 3.59 16 34 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.10 1.35 8.08 -2.39 -0.02 1.33 16 36 H 0.07 1.39 8.08 -2.39 -0.02 1.38 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 42 H 0.13 5.39 8.06 -2.91 -0.02 5.37 16 43 H 0.11 5.43 8.06 -2.91 -0.02 5.40 16 44 H 0.29 18.52 6.33 -92.71 -0.59 17.93 16 Total: -1.00 -80.63 377.90 6.71 -73.92 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 1.18 Total: 31.93 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 4.69 Total: -34.19 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -0.96 Total: -81.22 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.26 Total: -39.98 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.06 Total: 49.54 kcal Total: -80.63 6.71 -73.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245786285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.823 kcal (2) G-P(sol) polarization free energy of solvation -80.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds