Wall clock time and date at job start Tue Mar 31 2020 14:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45194 * 109.47143 * 2 1 4 4 C 1.34759 * 116.99858 * 180.02562 * 3 2 1 5 5 O 1.21492 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.47518 * 120.00134 * 180.02562 * 4 3 2 7 7 C 1.39461 * 120.22586 * 5.66100 * 6 4 3 8 8 C 1.38031 * 119.98963 * 179.97438 * 7 6 4 9 9 C 1.38567 * 120.46674 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.76680 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47408 * 89.99713 * 10 9 8 12 12 C 1.37986 * 120.46613 * 359.76062 * 9 8 7 13 13 C 1.39505 * 119.98573 * 0.51335 * 12 9 8 14 14 C 1.47643 * 120.22607 * 179.74024 * 13 12 9 15 15 N 1.32651 * 119.99681 * 111.74317 * 14 13 12 16 16 C 1.31676 * 121.72159 * 180.29202 * 15 14 13 17 17 C 1.38941 * 121.51603 * 359.72367 * 16 15 14 18 18 C 1.36845 * 119.81305 * 0.02562 * 17 16 15 19 19 C 1.41171 * 118.39263 * 359.97438 * 18 17 16 20 20 C 1.40809 * 120.72485 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99955 * 155.04511 * 20 19 18 22 22 C 1.40155 * 120.00379 * 335.04335 * 20 19 18 23 23 N 1.30720 * 119.99566 * 343.68943 * 22 20 19 24 24 Si 1.86797 * 120.00586 * 163.68719 * 22 20 19 25 25 H 1.48501 * 109.46951 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47007 * 119.99832 * 24 22 20 27 27 H 1.48493 * 109.47350 * 240.00343 * 24 22 20 28 28 H 1.08992 * 109.46907 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46718 * 299.99838 * 1 2 3 30 30 H 1.08997 * 109.47077 * 60.00003 * 1 2 3 31 31 H 1.09007 * 109.46598 * 240.00299 * 2 1 3 32 32 H 1.08991 * 109.47248 * 120.00394 * 2 1 3 33 33 H 1.08004 * 120.00412 * 359.97438 * 7 6 4 34 34 H 1.08000 * 119.76209 * 179.97438 * 8 7 6 35 35 H 1.09008 * 109.46998 * 209.99800 * 10 9 8 36 36 H 1.08999 * 109.47150 * 329.99267 * 10 9 8 37 37 H 1.08998 * 109.46820 * 299.99548 * 11 10 9 38 38 H 1.08999 * 109.47330 * 59.99664 * 11 10 9 39 39 H 1.09004 * 109.47180 * 180.02562 * 11 10 9 40 40 H 1.07993 * 120.00651 * 180.28273 * 12 9 8 41 41 H 1.07995 * 119.24109 * 179.70921 * 16 15 14 42 42 H 1.08002 * 120.09315 * 179.97438 * 17 16 15 43 43 H 1.08000 * 120.80305 * 179.97438 * 18 17 16 44 44 H 0.97000 * 120.00006 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3500 1.5454 -0.0005 5 8 4.0901 0.5819 -0.0005 6 6 3.9139 2.9086 0.0000 7 6 3.0743 4.0156 0.1199 8 6 3.6072 5.2889 0.1204 9 6 4.9749 5.4782 0.0028 10 6 5.5398 6.8752 0.0057 11 6 5.8621 7.2921 1.4421 12 6 5.8236 4.3963 -0.1114 13 6 5.3051 3.1012 -0.1198 14 6 6.2079 1.9399 -0.2476 15 7 6.3721 1.1118 0.7756 16 6 7.1729 0.0693 0.7009 17 6 7.8832 -0.2194 -0.4578 18 6 7.7566 0.5910 -1.5532 19 6 6.8965 1.7071 -1.4666 20 6 6.7298 2.5738 -2.5638 21 1 5.8244 3.1546 -2.6606 22 6 7.7389 2.6829 -3.5303 23 7 8.9432 2.2462 -3.2699 24 14 7.3631 3.4521 -5.1905 25 1 5.9369 3.8636 -5.2339 26 1 8.2276 4.6427 -5.3916 27 1 7.6259 2.4622 -6.2657 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0072 3.8767 0.2124 34 1 2.9536 6.1436 0.2131 35 1 6.4505 6.9002 -0.5929 36 1 4.8082 7.5639 -0.4170 37 1 4.9515 7.2673 2.0406 38 1 6.5936 6.6035 1.8648 39 1 6.2703 8.3028 1.4442 40 1 6.8887 4.5522 -0.1981 41 1 7.2803 -0.5762 1.5601 42 1 8.5341 -1.0805 -0.4937 43 1 8.3015 0.3819 -2.4619 44 1 9.6416 2.3213 -3.9390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245786467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:51 Heat of formation + Delta-G solvation = -43.937838 kcal Electronic energy + Delta-G solvation = -27681.756911 eV Core-core repulsion = 23949.328720 eV Total energy + Delta-G solvation = -3732.428191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.05439 -38.75718 -37.82155 -35.93626 -34.08497 -33.89522 -31.82921 -31.36009 -30.48526 -29.42024 -28.66684 -25.62704 -24.72687 -23.05259 -22.69430 -21.65820 -21.42631 -20.71171 -19.39151 -17.44893 -17.30807 -16.37026 -16.09595 -15.72814 -15.32361 -15.00305 -14.39840 -14.35523 -13.99502 -13.76710 -13.68015 -13.37431 -13.17728 -12.85737 -12.62901 -12.61514 -12.16829 -12.00232 -11.98143 -11.73635 -11.51341 -11.41616 -11.35630 -11.26236 -11.02327 -10.96728 -10.79929 -10.63724 -10.49424 -10.15855 -9.80751 -9.67300 -9.40002 -8.43753 -8.30195 -8.01271 -7.87344 -7.43733 -6.86555 -4.47949 1.27712 1.87373 2.64557 2.96386 3.00453 3.06311 3.11451 3.20797 3.28198 3.82938 4.31977 4.60727 4.97630 5.05559 5.06634 5.12507 5.23680 5.35775 5.40622 5.46219 5.52166 5.64619 5.68618 5.77235 5.85944 5.88284 5.94636 6.01533 6.04949 6.10706 6.25989 6.33913 6.36058 6.49672 6.55808 6.71002 6.77642 6.86845 6.94797 7.00671 7.09832 7.18952 7.27083 7.39453 7.79251 7.88514 7.97782 8.43222 8.47425 8.65215 8.75579 9.72797 10.01490 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007995 B = 0.005910 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.194044 B = 4736.382224 C = 6158.398084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.366 6.366 4 C 0.499 3.501 5 O -0.465 6.465 6 C -0.128 4.128 7 C -0.069 4.069 8 C -0.150 4.150 9 C -0.056 4.056 10 C -0.086 4.086 11 C -0.146 4.146 12 C -0.103 4.103 13 C 0.103 3.897 14 C 0.015 3.985 15 N -0.426 5.426 16 C -0.025 4.025 17 C -0.148 4.148 18 C -0.132 4.132 19 C 0.090 3.910 20 C -0.442 4.442 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.786 5.786 24 Si 0.906 3.094 25 H -0.258 1.258 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.130 0.870 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.489 4.962 3.029 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.010 4.010 3 O -0.285 6.285 4 C 0.342 3.658 5 O -0.350 6.350 6 C -0.130 4.130 7 C -0.087 4.087 8 C -0.168 4.168 9 C -0.056 4.056 10 C -0.124 4.124 11 C -0.203 4.203 12 C -0.122 4.122 13 C 0.102 3.898 14 C -0.124 4.124 15 N -0.133 5.133 16 C -0.187 4.187 17 C -0.168 4.168 18 C -0.158 4.158 19 C 0.086 3.914 20 C -0.472 4.472 21 H 0.099 0.901 22 C -0.142 4.142 23 N -0.410 5.410 24 Si 0.730 3.270 25 H -0.181 1.181 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.134 0.866 42 H 0.113 0.887 43 H 0.143 0.857 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.475 4.762 3.696 11.230 hybrid contribution 0.473 -0.250 -1.666 1.750 sum -9.002 4.512 2.030 10.272 Atomic orbital electron populations 1.21777 0.93153 1.02509 1.03195 1.22865 0.94701 0.81010 1.02431 1.86515 1.25000 1.31475 1.85518 1.21137 0.79957 0.90507 0.74227 1.90953 1.59289 1.41895 1.42828 1.19169 0.93392 0.89739 1.10697 1.21196 0.99274 0.91626 0.96606 1.20816 0.94466 0.96519 1.05035 1.19973 0.93447 0.95178 0.97017 1.20575 1.01274 0.92720 0.97802 1.21739 1.01778 1.00828 0.95948 1.21118 1.00145 0.90408 1.00530 1.18437 0.89726 0.92830 0.88833 1.19163 1.05197 0.96653 0.91375 1.66931 1.13125 1.02349 1.30929 1.21516 1.01265 0.98561 0.97345 1.21397 1.00333 0.99550 0.95555 1.21325 1.01829 0.94419 0.98247 1.18214 0.90228 0.91630 0.91356 1.19505 1.02624 1.20850 1.04185 0.90057 1.25975 0.94087 0.94016 1.00094 1.69757 1.01479 1.35084 1.34688 0.86279 0.80298 0.79325 0.81145 1.18096 1.19673 1.19542 0.90642 0.91719 0.91665 0.91558 0.91569 0.85381 0.86189 0.90676 0.91150 0.92671 0.92302 0.92679 0.85177 0.86626 0.88662 0.85729 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.15 16 2 C 0.06 0.93 6.20 37.16 0.23 1.16 16 3 O -0.37 -6.47 9.49 -40.65 -0.39 -6.85 16 4 C 0.50 10.64 7.86 34.51 0.27 10.91 16 5 O -0.46 -11.44 12.97 -19.26 -0.25 -11.69 16 6 C -0.13 -2.65 5.90 -104.63 -0.62 -3.27 16 7 C -0.07 -1.15 9.61 -39.20 -0.38 -1.52 16 8 C -0.15 -2.26 9.67 -39.54 -0.38 -2.64 16 9 C -0.06 -0.90 5.13 -104.59 -0.54 -1.44 16 10 C -0.09 -1.10 6.05 -27.89 -0.17 -1.27 16 11 C -0.15 -1.66 9.89 37.15 0.37 -1.29 16 12 C -0.10 -2.05 8.80 -39.20 -0.35 -2.40 16 13 C 0.10 2.33 4.50 -104.56 -0.47 1.86 16 14 C 0.01 0.38 4.50 -82.26 -0.37 0.01 16 15 N -0.43 -11.11 8.54 -9.19 -0.08 -11.19 16 16 C -0.03 -0.63 11.16 -17.36 -0.19 -0.82 16 17 C -0.15 -3.60 10.03 -39.83 -0.40 -4.00 16 18 C -0.13 -3.48 8.74 -38.97 -0.34 -3.82 16 19 C 0.09 2.41 5.60 -106.40 -0.60 1.82 16 20 C -0.44 -11.41 8.11 -37.89 -0.31 -11.72 16 21 H 0.08 2.09 7.20 -52.48 -0.38 1.71 16 22 C 0.08 1.88 5.19 -17.31 -0.09 1.79 16 23 N -0.79 -19.44 10.93 55.56 0.61 -18.83 16 24 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 25 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 27 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.13 1.82 7.62 -52.48 -0.40 1.43 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.07 0.97 8.08 -51.92 -0.42 0.55 16 36 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.13 2.66 8.06 -52.49 -0.42 2.23 16 41 H 0.12 2.53 8.06 -52.49 -0.42 2.10 16 42 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.12 3.29 6.25 -52.49 -0.33 2.97 16 44 H 0.28 6.33 8.29 -40.82 -0.34 6.00 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -30.38 372.97 -9.61 -39.99 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.15 Total: 7.61 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -3.94 Total: -17.81 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.53 Total: -30.01 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.64 Total: -18.54 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.38 -9.61 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245786467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.948 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds