Wall clock time and date at job start Tue Mar 31 2020 14:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45194 * 109.47143 * 2 1 4 4 C 1.34759 * 116.99858 * 180.02562 * 3 2 1 5 5 O 1.21492 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.47518 * 120.00134 * 180.02562 * 4 3 2 7 7 C 1.39461 * 120.22586 * 5.66100 * 6 4 3 8 8 C 1.38031 * 119.98963 * 179.97438 * 7 6 4 9 9 C 1.38567 * 120.46674 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.76680 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47408 * 89.99713 * 10 9 8 12 12 C 1.37986 * 120.46613 * 359.76062 * 9 8 7 13 13 C 1.39505 * 119.98573 * 0.51335 * 12 9 8 14 14 C 1.47643 * 120.22607 * 179.74024 * 13 12 9 15 15 N 1.32651 * 119.99681 * 111.74317 * 14 13 12 16 16 C 1.31676 * 121.72159 * 180.29202 * 15 14 13 17 17 C 1.38941 * 121.51603 * 359.72367 * 16 15 14 18 18 C 1.36845 * 119.81305 * 0.02562 * 17 16 15 19 19 C 1.41171 * 118.39263 * 359.97438 * 18 17 16 20 20 C 1.40809 * 120.72485 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99955 * 155.04511 * 20 19 18 22 22 C 1.40155 * 120.00379 * 335.04335 * 20 19 18 23 23 N 1.30720 * 119.99566 * 343.68943 * 22 20 19 24 24 Si 1.86797 * 120.00586 * 163.68719 * 22 20 19 25 25 H 1.48501 * 109.46951 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47007 * 119.99832 * 24 22 20 27 27 H 1.48493 * 109.47350 * 240.00343 * 24 22 20 28 28 H 1.08992 * 109.46907 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46718 * 299.99838 * 1 2 3 30 30 H 1.08997 * 109.47077 * 60.00003 * 1 2 3 31 31 H 1.09007 * 109.46598 * 240.00299 * 2 1 3 32 32 H 1.08991 * 109.47248 * 120.00394 * 2 1 3 33 33 H 1.08004 * 120.00412 * 359.97438 * 7 6 4 34 34 H 1.08000 * 119.76209 * 179.97438 * 8 7 6 35 35 H 1.09008 * 109.46998 * 209.99800 * 10 9 8 36 36 H 1.08999 * 109.47150 * 329.99267 * 10 9 8 37 37 H 1.08998 * 109.46820 * 299.99548 * 11 10 9 38 38 H 1.08999 * 109.47330 * 59.99664 * 11 10 9 39 39 H 1.09004 * 109.47180 * 180.02562 * 11 10 9 40 40 H 1.07993 * 120.00651 * 180.28273 * 12 9 8 41 41 H 1.07995 * 119.24109 * 179.70921 * 16 15 14 42 42 H 1.08002 * 120.09315 * 179.97438 * 17 16 15 43 43 H 1.08000 * 120.80305 * 179.97438 * 18 17 16 44 44 H 0.97000 * 120.00006 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3500 1.5454 -0.0005 5 8 4.0901 0.5819 -0.0005 6 6 3.9139 2.9086 0.0000 7 6 3.0743 4.0156 0.1199 8 6 3.6072 5.2889 0.1204 9 6 4.9749 5.4782 0.0028 10 6 5.5398 6.8752 0.0057 11 6 5.8621 7.2921 1.4421 12 6 5.8236 4.3963 -0.1114 13 6 5.3051 3.1012 -0.1198 14 6 6.2079 1.9399 -0.2476 15 7 6.3721 1.1118 0.7756 16 6 7.1729 0.0693 0.7009 17 6 7.8832 -0.2194 -0.4578 18 6 7.7566 0.5910 -1.5532 19 6 6.8965 1.7071 -1.4666 20 6 6.7298 2.5738 -2.5638 21 1 5.8244 3.1546 -2.6606 22 6 7.7389 2.6829 -3.5303 23 7 8.9432 2.2462 -3.2699 24 14 7.3631 3.4521 -5.1905 25 1 5.9369 3.8636 -5.2339 26 1 8.2276 4.6427 -5.3916 27 1 7.6259 2.4622 -6.2657 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0072 3.8767 0.2124 34 1 2.9536 6.1436 0.2131 35 1 6.4505 6.9002 -0.5929 36 1 4.8082 7.5639 -0.4170 37 1 4.9515 7.2673 2.0406 38 1 6.5936 6.6035 1.8648 39 1 6.2703 8.3028 1.4442 40 1 6.8887 4.5522 -0.1981 41 1 7.2803 -0.5762 1.5601 42 1 8.5341 -1.0805 -0.4937 43 1 8.3015 0.3819 -2.4619 44 1 9.6416 2.3213 -3.9390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245786467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:50 Heat of formation + Delta-G solvation = -58.563924 kcal Electronic energy + Delta-G solvation = -27682.391146 eV Core-core repulsion = 23949.328720 eV Total energy + Delta-G solvation = -3733.062426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60641 -40.35914 -39.47759 -37.47275 -35.97653 -35.14717 -33.34036 -32.54095 -32.42138 -30.74286 -30.28577 -27.51281 -26.02860 -24.43698 -24.03975 -23.40050 -22.82537 -22.31667 -20.91562 -19.26664 -18.90610 -17.90351 -17.55756 -17.41692 -16.95267 -16.42107 -16.11673 -15.86419 -15.46786 -15.24621 -15.06458 -14.60151 -14.43540 -14.25466 -14.06702 -13.89238 -13.70369 -13.57958 -13.34136 -13.28589 -13.16883 -12.89472 -12.77364 -12.54347 -12.52998 -12.35751 -12.16113 -11.95590 -11.76728 -11.55886 -11.49785 -11.33752 -11.22065 -10.16625 -9.92543 -9.72568 -9.65723 -9.28525 -8.70598 -6.42637 -0.20499 0.41587 0.83593 1.13513 1.34223 1.48204 1.50294 1.66886 1.72066 2.14747 2.71667 2.87085 3.64132 3.74215 3.82414 3.90962 3.98568 4.07703 4.11738 4.30766 4.33163 4.38658 4.47127 4.50945 4.57344 4.63377 4.73809 4.81717 4.85192 4.92371 4.97245 5.04985 5.07852 5.13507 5.13596 5.19302 5.20098 5.28348 5.41111 5.45222 5.45445 5.63467 5.69152 5.83394 5.90458 6.03295 6.05461 6.48819 6.72894 6.81945 6.90589 7.78844 8.21051 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007995 B = 0.005910 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.194044 B = 4736.382224 C = 6158.398084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.496 3.504 5 O -0.512 6.512 6 C -0.156 4.156 7 C -0.057 4.057 8 C -0.133 4.133 9 C -0.044 4.044 10 C -0.086 4.086 11 C -0.143 4.143 12 C -0.122 4.122 13 C 0.064 3.936 14 C 0.013 3.987 15 N -0.445 5.445 16 C -0.043 4.043 17 C -0.150 4.150 18 C -0.160 4.160 19 C 0.059 3.941 20 C -0.461 4.461 21 H 0.073 0.927 22 C 0.041 3.959 23 N -0.812 5.812 24 Si 0.977 3.023 25 H -0.259 1.259 26 H -0.257 1.257 27 H -0.263 1.263 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.140 0.860 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.008 7.658 2.653 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 O -0.275 6.275 4 C 0.342 3.658 5 O -0.400 6.400 6 C -0.157 4.157 7 C -0.075 4.075 8 C -0.151 4.151 9 C -0.044 4.044 10 C -0.123 4.123 11 C -0.200 4.200 12 C -0.141 4.141 13 C 0.063 3.937 14 C -0.126 4.126 15 N -0.153 5.153 16 C -0.203 4.203 17 C -0.170 4.170 18 C -0.186 4.186 19 C 0.055 3.945 20 C -0.490 4.490 21 H 0.092 0.908 22 C -0.176 4.176 23 N -0.437 5.437 24 Si 0.797 3.203 25 H -0.182 1.182 26 H -0.181 1.181 27 H -0.188 1.188 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.176 0.824 34 H 0.188 0.812 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.157 0.843 42 H 0.142 0.858 43 H 0.133 0.867 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.004 7.452 3.344 14.519 hybrid contribution 1.190 -1.054 -1.461 2.159 sum -10.814 6.398 1.884 12.705 Atomic orbital electron populations 1.21788 0.89217 1.04456 1.03996 1.23224 0.97629 0.79452 1.01621 1.86503 1.22896 1.33316 1.84748 1.21458 0.80781 0.90522 0.73075 1.90921 1.60531 1.43295 1.45256 1.19329 0.93163 0.90770 1.12470 1.21561 1.00234 0.91011 0.94685 1.21353 0.94303 0.97350 1.02060 1.20390 0.93836 0.95761 0.94385 1.20687 1.01774 0.90925 0.98882 1.21726 1.01893 1.01548 0.94843 1.21037 0.99791 0.90862 1.02416 1.18519 0.90513 0.92695 0.91945 1.19667 1.04940 0.97236 0.90777 1.66993 1.13673 1.03056 1.31561 1.21993 1.01086 0.98870 0.98332 1.21650 1.00431 1.00043 0.94878 1.21375 1.03042 0.95446 0.98719 1.18620 0.91139 0.92329 0.92448 1.19553 1.02961 1.21406 1.05105 0.90841 1.26792 0.93421 0.94211 1.03209 1.69791 1.02319 1.35476 1.36126 0.85228 0.80028 0.78878 0.76196 1.18220 1.18107 1.18776 0.88120 0.90672 0.91013 0.92768 0.92205 0.82375 0.81164 0.91406 0.87891 0.91563 0.94375 0.90382 0.87371 0.84292 0.85813 0.86658 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.29 71.98 0.74 -1.79 16 2 C 0.05 1.58 6.20 71.98 0.45 2.02 16 3 O -0.36 -12.51 9.49 -56.70 -0.54 -13.05 16 4 C 0.50 21.82 7.86 70.27 0.55 22.37 16 5 O -0.51 -26.58 12.97 19.86 0.26 -26.32 16 6 C -0.16 -6.52 5.90 -19.87 -0.12 -6.63 16 7 C -0.06 -1.76 9.61 22.52 0.22 -1.55 16 8 C -0.13 -3.48 9.67 22.30 0.22 -3.26 16 9 C -0.04 -1.32 5.13 -19.85 -0.10 -1.43 16 10 C -0.09 -1.92 6.05 29.85 0.18 -1.74 16 11 C -0.14 -2.84 9.89 71.98 0.71 -2.13 16 12 C -0.12 -5.01 8.80 22.52 0.20 -4.81 16 13 C 0.06 3.04 4.50 -19.82 -0.09 2.95 16 14 C 0.01 0.72 4.50 42.42 0.19 0.91 16 15 N -0.45 -24.50 8.54 -182.99 -1.56 -26.06 16 16 C -0.04 -2.20 11.16 84.88 0.95 -1.25 16 17 C -0.15 -7.63 10.03 22.11 0.22 -7.41 16 18 C -0.16 -8.91 8.74 22.66 0.20 -8.71 16 19 C 0.06 3.36 5.60 -21.02 -0.12 3.24 16 20 C -0.46 -24.99 8.11 23.36 0.19 -24.80 16 21 H 0.07 3.96 7.20 -2.91 -0.02 3.94 16 22 C 0.04 2.02 5.19 85.32 0.44 2.46 16 23 N -0.81 -41.51 10.93 21.86 0.24 -41.27 16 24 Si 0.98 37.47 29.59 68.60 2.03 39.50 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 27 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.68 8.14 -2.38 -0.02 1.67 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.16 3.89 7.62 -2.91 -0.02 3.87 16 34 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.07 1.64 8.08 -2.38 -0.02 1.62 16 36 H 0.10 1.71 8.08 -2.39 -0.02 1.69 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 41 H 0.14 6.25 8.06 -2.91 -0.02 6.23 16 42 H 0.12 5.37 8.06 -2.91 -0.02 5.34 16 43 H 0.12 6.47 6.25 -2.91 -0.02 6.46 16 44 H 0.29 13.36 8.29 -92.71 -0.77 12.59 16 Total: -1.00 -72.11 372.97 6.46 -65.65 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 1.00 Total: 33.11 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 5.03 Total: -31.56 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -1.32 Total: -67.33 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -0.28 Total: -39.36 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Total: -72.11 6.46 -65.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245786467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.089 kcal (2) G-P(sol) polarization free energy of solvation -72.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds