Wall clock time and date at job start Tue Mar 31 2020 14:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.47042 * 2 1 4 4 C 1.34742 * 116.99913 * 179.97438 * 3 2 1 5 5 O 1.21486 * 119.99910 * 359.97438 * 4 3 2 6 6 C 1.47558 * 120.00031 * 180.02562 * 4 3 2 7 7 C 1.39529 * 120.21357 * 6.44589 * 6 4 3 8 8 C 1.37954 * 119.96699 * 179.97438 * 7 6 4 9 9 C 1.38502 * 120.39978 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.78441 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46946 * 89.99924 * 10 9 8 12 12 C 1.38074 * 120.43184 * 359.70194 * 9 8 7 13 13 C 1.39163 * 120.02636 * 0.55249 * 12 9 8 14 14 C 1.48231 * 120.19987 * 179.75165 * 13 12 9 15 15 C 1.40112 * 120.83484 * 57.90460 * 14 13 12 16 16 C 1.38515 * 119.41289 * 180.02562 * 15 14 13 17 17 N 1.31463 * 121.15800 * 0.02562 * 16 15 14 18 18 C 1.33636 * 121.81331 * 359.97393 * 17 16 15 19 19 C 1.41416 * 119.77351 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99985 * 179.97438 * 19 18 17 21 21 C 1.40038 * 120.00229 * 359.73233 * 19 18 17 22 22 N 1.30740 * 119.99874 * 0.26773 * 21 19 18 23 23 Si 1.86798 * 120.00286 * 180.27638 * 21 19 18 24 24 H 1.48501 * 109.47281 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47454 * 119.99735 * 23 21 19 26 26 H 1.48501 * 109.47040 * 239.99720 * 23 21 19 27 27 C 1.39377 * 120.82680 * 238.18455 * 14 13 12 28 28 H 1.09003 * 109.47206 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47159 * 300.00103 * 1 2 3 30 30 H 1.09001 * 109.46992 * 59.99818 * 1 2 3 31 31 H 1.08997 * 109.47159 * 239.99897 * 2 1 3 32 32 H 1.09000 * 109.46608 * 119.99805 * 2 1 3 33 33 H 1.08004 * 120.01494 * 0.02562 * 7 6 4 34 34 H 1.07995 * 119.79932 * 180.02562 * 8 7 6 35 35 H 1.08992 * 109.47502 * 210.00410 * 10 9 8 36 36 H 1.09009 * 109.46913 * 330.00323 * 10 9 8 37 37 H 1.09009 * 109.46989 * 60.00446 * 11 10 9 38 38 H 1.08996 * 109.47128 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47493 * 300.00256 * 11 10 9 40 40 H 1.08007 * 119.99033 * 180.30045 * 12 9 8 41 41 H 1.07997 * 120.29063 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.42220 * 179.97438 * 16 15 14 43 43 H 0.97000 * 119.99945 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.58814 * 359.97037 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5455 0.0005 5 8 4.0898 0.5820 0.0015 6 6 3.9138 2.9090 0.0011 7 6 3.0750 4.0157 0.1365 8 6 3.6078 5.2882 0.1370 9 6 4.9734 5.4763 0.0031 10 6 5.5405 6.8725 0.0048 11 6 5.8815 7.2827 1.4388 12 6 5.8193 4.3927 -0.1263 13 6 5.3005 3.1014 -0.1344 14 6 6.2044 1.9355 -0.2786 15 6 7.2461 1.7174 0.6326 16 6 8.0737 0.6186 0.4696 17 7 7.8991 -0.2226 -0.5254 18 6 6.9213 -0.0605 -1.4218 19 6 6.7732 -0.9918 -2.4756 20 1 5.9839 -0.8645 -3.2018 21 6 7.6530 -2.0762 -2.5806 22 7 8.6081 -2.2306 -1.7013 23 14 7.4621 -3.3020 -3.9771 24 1 6.3129 -2.9058 -4.8300 25 1 8.7024 -3.3193 -4.7937 26 1 7.2191 -4.6559 -3.4176 27 6 6.0430 1.0320 -1.3276 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0092 3.8762 0.2418 34 1 2.9561 6.1429 0.2423 35 1 6.4435 6.8988 -0.6051 36 1 4.8046 7.5641 -0.4057 37 1 6.6175 6.5911 1.8492 38 1 6.2921 8.2923 1.4400 39 1 4.9785 7.2565 2.0487 40 1 6.8836 4.5474 -0.2254 41 1 7.4029 2.4003 1.4544 42 1 8.8769 0.4506 1.1717 43 1 9.2178 -2.9815 -1.7742 44 1 5.2545 1.1674 -2.0531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245786676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:13 Heat of formation + Delta-G solvation = -34.469825 kcal Electronic energy + Delta-G solvation = -27087.667966 eV Core-core repulsion = 23355.650339 eV Total energy + Delta-G solvation = -3732.017627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.33674 -38.93745 -37.81551 -36.14369 -34.30088 -33.51714 -32.15032 -31.52405 -29.96674 -29.66896 -28.76805 -25.59669 -25.00849 -23.26088 -22.87772 -21.88290 -21.41791 -20.73336 -19.74397 -17.74805 -17.15200 -16.43560 -16.23024 -15.60723 -15.30330 -14.99156 -14.45076 -14.30267 -14.20747 -13.95221 -13.70904 -13.51181 -13.46714 -13.09286 -12.75224 -12.67001 -12.44265 -12.13432 -12.05637 -11.90814 -11.55485 -11.50670 -11.32676 -11.18259 -11.14248 -11.03779 -10.74774 -10.68668 -10.35128 -10.22934 -10.04087 -9.83608 -9.28363 -8.76139 -8.65410 -7.67566 -7.47473 -7.44868 -6.29968 -4.38875 0.91637 1.47175 2.82273 2.86560 2.94168 3.13530 3.15549 3.18098 3.25211 3.99285 4.02199 4.67176 4.79874 4.85168 4.94643 5.02197 5.05424 5.10567 5.17788 5.25169 5.37808 5.43617 5.47695 5.55242 5.75247 5.77977 5.82528 5.87537 5.93733 5.98705 6.03822 6.11110 6.15555 6.18160 6.36706 6.49040 6.60630 6.63864 6.79729 6.82916 6.97829 7.01538 7.22457 7.42467 7.62765 7.76075 8.09145 8.26694 8.32835 8.76484 9.03712 10.22961 10.42846 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010240 B = 0.004375 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.618030 B = 6398.354442 C = 8407.518299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.366 6.366 4 C 0.487 3.513 5 O -0.452 6.452 6 C -0.123 4.123 7 C -0.063 4.063 8 C -0.146 4.146 9 C -0.052 4.052 10 C -0.087 4.087 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.051 3.949 14 C -0.011 4.011 15 C -0.294 4.294 16 C 0.118 3.882 17 N -0.479 5.479 18 C 0.259 3.741 19 C -0.434 4.434 20 H 0.080 0.920 21 C 0.071 3.929 22 N -0.719 5.719 23 Si 0.904 3.096 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.274 1.274 27 C -0.199 4.199 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.270 0.730 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 12.482 3.596 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.284 6.284 4 C 0.329 3.671 5 O -0.336 6.336 6 C -0.124 4.124 7 C -0.081 4.081 8 C -0.164 4.164 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.204 4.204 12 C -0.138 4.138 13 C 0.050 3.950 14 C -0.017 4.017 15 C -0.317 4.317 16 C -0.046 4.046 17 N -0.192 5.192 18 C 0.134 3.866 19 C -0.466 4.466 20 H 0.098 0.902 21 C -0.154 4.154 22 N -0.341 5.341 23 Si 0.728 3.272 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.222 4.222 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.149 0.851 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.070 11.260 3.537 15.515 hybrid contribution -0.723 -0.042 -0.417 0.836 sum -10.793 11.218 3.120 15.877 Atomic orbital electron populations 1.21783 0.93042 1.02693 1.03103 1.22939 0.94738 0.80518 1.02909 1.86481 1.24648 1.31995 1.85322 1.21161 0.80418 0.90392 0.75097 1.91123 1.58864 1.41867 1.41733 1.19133 0.93170 0.90262 1.09881 1.21301 0.99662 0.91488 0.95666 1.20895 0.94557 0.96774 1.04147 1.20055 0.93523 0.95335 0.96286 1.20600 1.01242 0.92527 0.98091 1.21747 1.01872 1.01100 0.95698 1.21089 1.00134 0.90437 1.02144 1.19124 0.90882 0.93903 0.91066 1.18345 0.94161 0.92840 0.96367 1.21178 1.02499 1.04208 1.03813 1.22352 0.96198 0.90536 0.95563 1.68664 1.20585 1.26830 1.03143 1.18447 0.87151 0.89840 0.91165 1.19567 1.12238 1.05969 1.08786 0.90218 1.26023 0.94453 0.98355 0.96546 1.70153 1.10121 1.24569 1.29286 0.86340 0.79225 0.80277 0.81349 1.18532 1.19873 1.19905 1.21516 1.02602 0.98045 1.00002 0.90454 0.91788 0.91665 0.91044 0.91396 0.84870 0.85749 0.90688 0.90902 0.92253 0.92410 0.92540 0.85067 0.89016 0.86523 0.91884 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.29 37.16 0.38 -1.09 16 2 C 0.06 0.88 6.20 37.16 0.23 1.11 16 3 O -0.37 -5.95 9.49 -40.61 -0.39 -6.34 16 4 C 0.49 9.50 7.64 34.53 0.26 9.76 16 5 O -0.45 -10.66 12.14 -19.25 -0.23 -10.89 16 6 C -0.12 -2.21 5.88 -104.71 -0.62 -2.83 16 7 C -0.06 -0.88 9.61 -39.20 -0.38 -1.26 16 8 C -0.15 -1.78 9.67 -39.59 -0.38 -2.16 16 9 C -0.05 -0.67 5.13 -104.58 -0.54 -1.20 16 10 C -0.09 -0.84 6.05 -27.88 -0.17 -1.01 16 11 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 12 C -0.12 -1.92 9.30 -39.30 -0.37 -2.28 16 13 C 0.05 0.98 5.45 -104.54 -0.57 0.41 16 14 C -0.01 -0.26 4.17 -104.66 -0.44 -0.70 16 15 C -0.29 -6.90 9.79 -38.78 -0.38 -7.28 16 16 C 0.12 3.01 11.17 -17.61 -0.20 2.81 16 17 N -0.48 -13.86 7.84 -11.21 -0.09 -13.95 16 18 C 0.26 7.46 6.55 -85.02 -0.56 6.91 16 19 C -0.43 -12.26 9.14 -37.70 -0.34 -12.61 16 20 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 21 C 0.07 1.88 5.50 -17.34 -0.10 1.79 16 22 N -0.72 -19.97 11.46 55.55 0.64 -19.33 16 23 Si 0.90 19.41 29.56 -169.99 -5.02 14.39 16 24 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 C -0.20 -5.19 6.68 -38.31 -0.26 -5.44 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.13 1.59 7.63 -52.48 -0.40 1.19 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.07 0.59 8.08 -51.92 -0.42 0.17 16 37 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 41 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 43 H 0.27 6.77 8.29 -40.82 -0.34 6.43 16 44 H 0.09 2.28 7.87 -52.48 -0.41 1.87 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -32.89 375.08 -9.75 -42.64 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.27 Total: 3.82 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -4.04 Total: -15.99 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.55 Total: -33.28 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.62 Total: -17.23 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.89 -9.75 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245786676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.170 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds