Wall clock time and date at job start Tue Mar 31 2020 14:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45195 * 109.47042 * 2 1 4 4 C 1.34742 * 116.99913 * 179.97438 * 3 2 1 5 5 O 1.21486 * 119.99910 * 359.97438 * 4 3 2 6 6 C 1.47558 * 120.00031 * 180.02562 * 4 3 2 7 7 C 1.39529 * 120.21357 * 6.44589 * 6 4 3 8 8 C 1.37954 * 119.96699 * 179.97438 * 7 6 4 9 9 C 1.38502 * 120.39978 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.78441 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46946 * 89.99924 * 10 9 8 12 12 C 1.38074 * 120.43184 * 359.70194 * 9 8 7 13 13 C 1.39163 * 120.02636 * 0.55249 * 12 9 8 14 14 C 1.48231 * 120.19987 * 179.75165 * 13 12 9 15 15 C 1.40112 * 120.83484 * 57.90460 * 14 13 12 16 16 C 1.38515 * 119.41289 * 180.02562 * 15 14 13 17 17 N 1.31463 * 121.15800 * 0.02562 * 16 15 14 18 18 C 1.33636 * 121.81331 * 359.97393 * 17 16 15 19 19 C 1.41416 * 119.77351 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99985 * 179.97438 * 19 18 17 21 21 C 1.40038 * 120.00229 * 359.73233 * 19 18 17 22 22 N 1.30740 * 119.99874 * 0.26773 * 21 19 18 23 23 Si 1.86798 * 120.00286 * 180.27638 * 21 19 18 24 24 H 1.48501 * 109.47281 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47454 * 119.99735 * 23 21 19 26 26 H 1.48501 * 109.47040 * 239.99720 * 23 21 19 27 27 C 1.39377 * 120.82680 * 238.18455 * 14 13 12 28 28 H 1.09003 * 109.47206 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47159 * 300.00103 * 1 2 3 30 30 H 1.09001 * 109.46992 * 59.99818 * 1 2 3 31 31 H 1.08997 * 109.47159 * 239.99897 * 2 1 3 32 32 H 1.09000 * 109.46608 * 119.99805 * 2 1 3 33 33 H 1.08004 * 120.01494 * 0.02562 * 7 6 4 34 34 H 1.07995 * 119.79932 * 180.02562 * 8 7 6 35 35 H 1.08992 * 109.47502 * 210.00410 * 10 9 8 36 36 H 1.09009 * 109.46913 * 330.00323 * 10 9 8 37 37 H 1.09009 * 109.46989 * 60.00446 * 11 10 9 38 38 H 1.08996 * 109.47128 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47493 * 300.00256 * 11 10 9 40 40 H 1.08007 * 119.99033 * 180.30045 * 12 9 8 41 41 H 1.07997 * 120.29063 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.42220 * 179.97438 * 16 15 14 43 43 H 0.97000 * 119.99945 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.58814 * 359.97037 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5455 0.0005 5 8 4.0898 0.5820 0.0015 6 6 3.9138 2.9090 0.0011 7 6 3.0750 4.0157 0.1365 8 6 3.6078 5.2882 0.1370 9 6 4.9734 5.4763 0.0031 10 6 5.5405 6.8725 0.0048 11 6 5.8815 7.2827 1.4388 12 6 5.8193 4.3927 -0.1263 13 6 5.3005 3.1014 -0.1344 14 6 6.2044 1.9355 -0.2786 15 6 7.2461 1.7174 0.6326 16 6 8.0737 0.6186 0.4696 17 7 7.8991 -0.2226 -0.5254 18 6 6.9213 -0.0605 -1.4218 19 6 6.7732 -0.9918 -2.4756 20 1 5.9839 -0.8645 -3.2018 21 6 7.6530 -2.0762 -2.5806 22 7 8.6081 -2.2306 -1.7013 23 14 7.4621 -3.3020 -3.9771 24 1 6.3129 -2.9058 -4.8300 25 1 8.7024 -3.3193 -4.7937 26 1 7.2191 -4.6559 -3.4176 27 6 6.0430 1.0320 -1.3276 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0092 3.8762 0.2418 34 1 2.9561 6.1429 0.2423 35 1 6.4435 6.8988 -0.6051 36 1 4.8046 7.5641 -0.4057 37 1 6.6175 6.5911 1.8492 38 1 6.2921 8.2923 1.4400 39 1 4.9785 7.2565 2.0487 40 1 6.8836 4.5474 -0.2254 41 1 7.4029 2.4003 1.4544 42 1 8.8769 0.4506 1.1717 43 1 9.2178 -2.9815 -1.7742 44 1 5.2545 1.1674 -2.0531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245786676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:12 Heat of formation + Delta-G solvation = -51.680693 kcal Electronic energy + Delta-G solvation = -27088.414285 eV Core-core repulsion = 23355.650339 eV Total energy + Delta-G solvation = -3732.763947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76182 -40.32643 -39.58035 -37.60728 -35.70006 -35.14592 -33.67567 -32.59252 -31.92109 -30.86317 -30.25516 -27.63508 -26.13186 -24.55005 -24.10943 -23.35924 -22.86534 -22.36486 -21.18138 -19.26362 -18.82724 -17.86458 -17.61003 -17.37872 -16.53764 -16.41406 -16.16088 -15.97436 -15.60802 -15.35379 -15.09353 -14.55561 -14.48748 -14.39444 -14.23113 -13.94072 -13.89919 -13.61439 -13.37941 -13.05416 -12.92494 -12.90307 -12.81630 -12.58961 -12.55298 -12.34121 -12.12122 -12.01443 -11.76582 -11.68446 -11.55994 -11.52773 -11.20628 -10.18586 -9.86163 -9.53313 -9.52044 -9.35505 -8.29342 -6.49854 -0.37897 0.24531 0.90824 1.18545 1.35015 1.48625 1.51333 1.57506 1.64871 2.20915 2.72691 2.84561 3.61973 3.65303 3.81837 3.87325 3.96356 4.00657 4.08554 4.19543 4.24667 4.31331 4.33272 4.48759 4.55477 4.58502 4.65057 4.78482 4.79042 4.88769 4.90528 4.96376 5.01555 5.09993 5.11366 5.14763 5.19182 5.24693 5.35863 5.43810 5.45175 5.49788 5.57882 5.61860 5.84028 5.89782 6.12240 6.25817 6.72469 6.81249 6.96999 8.19203 8.46515 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010240 B = 0.004375 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.618030 B = 6398.354442 C = 8407.518299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.486 3.514 5 O -0.508 6.508 6 C -0.147 4.147 7 C -0.052 4.052 8 C -0.126 4.126 9 C -0.038 4.038 10 C -0.086 4.086 11 C -0.146 4.146 12 C -0.125 4.125 13 C 0.012 3.988 14 C 0.002 3.998 15 C -0.290 4.290 16 C 0.098 3.902 17 N -0.516 5.516 18 C 0.228 3.772 19 C -0.476 4.476 20 H 0.076 0.924 21 C 0.024 3.976 22 N -0.760 5.760 23 Si 0.987 3.013 24 H -0.258 1.258 25 H -0.260 1.260 26 H -0.264 1.264 27 C -0.215 4.215 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.278 0.722 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.248 15.537 3.846 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 O -0.272 6.272 4 C 0.331 3.669 5 O -0.396 6.396 6 C -0.148 4.148 7 C -0.070 4.070 8 C -0.143 4.143 9 C -0.038 4.038 10 C -0.123 4.123 11 C -0.203 4.203 12 C -0.143 4.143 13 C 0.011 3.989 14 C -0.004 4.004 15 C -0.312 4.312 16 C -0.066 4.066 17 N -0.229 5.229 18 C 0.103 3.897 19 C -0.508 4.508 20 H 0.094 0.906 21 C -0.196 4.196 22 N -0.382 5.382 23 Si 0.807 3.193 24 H -0.181 1.181 25 H -0.184 1.184 26 H -0.189 1.189 27 C -0.238 4.238 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.177 0.823 34 H 0.189 0.811 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.148 0.852 41 H 0.139 0.861 42 H 0.156 0.844 43 H 0.089 0.911 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.332 14.355 3.807 19.304 hybrid contribution -0.136 -0.746 -0.353 0.836 sum -12.468 13.609 3.454 18.777 Atomic orbital electron populations 1.21787 0.89087 1.04424 1.04111 1.23228 0.97696 0.79393 1.01652 1.86480 1.22924 1.33212 1.84570 1.21672 0.80986 0.90745 0.73527 1.91103 1.60199 1.43659 1.44686 1.19210 0.93086 0.90569 1.11952 1.21607 1.00410 0.90932 0.94077 1.21432 0.94709 0.97298 1.00904 1.20465 0.93690 0.96046 0.93630 1.20712 1.02049 0.90602 0.98937 1.21750 1.01893 1.01790 0.94899 1.21151 1.00742 0.90007 1.02449 1.19020 0.91108 0.93604 0.95128 1.18704 0.93965 0.93342 0.94402 1.21520 1.01818 1.03723 1.04187 1.22829 0.97339 0.90959 0.95461 1.68604 1.21495 1.28466 1.04348 1.18849 0.88016 0.91050 0.91778 1.19859 1.13564 1.07764 1.09600 0.90572 1.26970 0.93453 0.99823 0.99371 1.70245 1.11029 1.25671 1.31299 0.85110 0.79589 0.77182 0.77454 1.18148 1.18443 1.18908 1.21431 1.02326 0.98839 1.01227 0.88373 0.90479 0.90841 0.92869 0.92341 0.82332 0.81061 0.90533 0.88092 0.93763 0.90532 0.91893 0.85180 0.86084 0.84350 0.91133 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 10.29 71.98 0.74 -1.75 16 2 C 0.05 1.56 6.20 71.98 0.45 2.01 16 3 O -0.35 -11.59 9.49 -56.52 -0.54 -12.12 16 4 C 0.49 19.65 7.64 70.28 0.54 20.18 16 5 O -0.51 -25.70 12.14 19.88 0.24 -25.46 16 6 C -0.15 -5.24 5.88 -19.92 -0.12 -5.36 16 7 C -0.05 -1.30 9.61 22.51 0.22 -1.09 16 8 C -0.13 -2.45 9.67 22.27 0.22 -2.23 16 9 C -0.04 -0.84 5.13 -19.84 -0.10 -0.94 16 10 C -0.09 -1.27 6.05 29.85 0.18 -1.09 16 11 C -0.15 -1.97 9.89 71.98 0.71 -1.25 16 12 C -0.13 -3.86 9.30 22.45 0.21 -3.65 16 13 C 0.01 0.46 5.45 -19.81 -0.11 0.35 16 14 C 0.00 0.11 4.17 -19.89 -0.08 0.03 16 15 C -0.29 -14.05 9.79 22.79 0.22 -13.83 16 16 C 0.10 5.20 11.17 84.81 0.95 6.15 16 17 N -0.52 -31.69 7.84 -189.37 -1.49 -33.17 16 18 C 0.23 14.13 6.55 40.20 0.26 14.39 16 19 C -0.48 -28.83 9.14 23.49 0.21 -28.61 16 20 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 21 C 0.02 1.36 5.50 85.29 0.47 1.83 16 22 N -0.76 -44.27 11.46 21.84 0.25 -44.02 16 23 Si 0.99 41.41 29.56 68.60 2.03 43.44 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 27 C -0.22 -12.10 6.68 23.09 0.15 -11.95 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.16 3.12 7.63 -2.91 -0.02 3.10 16 34 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 36 H 0.10 1.01 8.08 -2.38 -0.02 0.99 16 37 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 41 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16 42 H 0.14 6.50 8.06 -2.91 -0.02 6.47 16 43 H 0.28 14.51 8.29 -92.71 -0.77 13.74 16 44 H 0.08 4.36 7.87 -2.91 -0.02 4.34 16 Total: -1.00 -79.60 375.08 6.61 -72.98 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 1.00 Total: 25.16 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 5.12 Total: -26.81 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -1.24 Total: -77.19 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.30 Total: -37.58 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -79.60 6.61 -72.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245786676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.302 kcal (2) G-P(sol) polarization free energy of solvation -79.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds