Wall clock time and date at job start Tue Mar 31 2020 14:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.46983 * 2 1 4 4 C 1.34746 * 116.99906 * 179.97438 * 3 2 1 5 5 O 1.21498 * 120.00254 * 359.97438 * 4 3 2 6 6 C 1.47505 * 120.00121 * 180.02562 * 4 3 2 7 7 C 1.39572 * 120.21477 * 6.33498 * 6 4 3 8 8 C 1.37909 * 119.95983 * 179.97438 * 7 6 4 9 9 C 1.38522 * 120.41299 * 359.97438 * 8 7 6 10 10 C 1.50710 * 119.78288 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47278 * 89.99727 * 10 9 8 12 12 C 1.38043 * 120.44044 * 359.71945 * 9 8 7 13 13 C 1.39190 * 120.02036 * 0.55791 * 12 9 8 14 14 C 1.48212 * 120.19852 * 179.71951 * 13 12 9 15 15 C 1.39798 * 120.41982 * 238.07101 * 14 13 12 16 16 N 1.31892 * 121.13334 * 180.29086 * 15 14 13 17 17 C 1.31522 * 122.13750 * 359.72285 * 16 15 14 18 18 C 1.40778 * 120.69120 * 359.97438 * 17 16 15 19 19 C 1.41441 * 120.60475 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99579 * 336.14513 * 19 18 17 21 21 C 1.39937 * 120.00216 * 156.15114 * 19 18 17 22 22 N 1.30822 * 120.00085 * 342.86465 * 21 19 18 23 23 Si 1.86801 * 119.99962 * 162.86534 * 21 19 18 24 24 H 1.48503 * 109.47123 * 89.99969 * 23 21 19 25 25 H 1.48497 * 109.47046 * 209.99637 * 23 21 19 26 26 H 1.48505 * 109.47115 * 330.00087 * 23 21 19 27 27 C 1.39250 * 120.42026 * 57.80171 * 14 13 12 28 28 H 1.09000 * 109.47329 * 300.00270 * 1 2 3 29 29 H 1.08994 * 109.46874 * 59.99976 * 1 2 3 30 30 H 1.08999 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46955 * 240.00002 * 2 1 3 32 32 H 1.09000 * 109.46922 * 119.99561 * 2 1 3 33 33 H 1.07997 * 120.02263 * 359.97438 * 7 6 4 34 34 H 1.08007 * 119.79762 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.46772 * 209.99676 * 10 9 8 36 36 H 1.09004 * 109.46631 * 329.99294 * 10 9 8 37 37 H 1.08991 * 109.47139 * 180.02562 * 11 10 9 38 38 H 1.09007 * 109.46669 * 300.00209 * 11 10 9 39 39 H 1.09002 * 109.47137 * 60.00080 * 11 10 9 40 40 H 1.07998 * 119.98960 * 180.28573 * 12 9 8 41 41 H 1.08005 * 119.43213 * 359.97438 * 15 14 13 42 42 H 1.08004 * 119.65802 * 179.97438 * 17 16 15 43 43 H 0.97000 * 120.00342 * 180.02562 * 22 21 19 44 44 H 1.07999 * 120.95973 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0900 0.5820 0.0015 6 6 3.9137 2.9086 0.0011 7 6 3.0744 4.0158 0.1342 8 6 3.6072 5.2878 0.1347 9 6 4.9734 5.4758 0.0041 10 6 5.5404 6.8722 0.0058 11 6 5.8775 7.2840 1.4402 12 6 5.8196 4.3925 -0.1222 13 6 5.3008 3.1009 -0.1308 14 6 6.2051 1.9352 -0.2725 15 6 6.0363 1.0324 -1.3264 16 7 6.8292 -0.0127 -1.4627 17 6 7.8147 -0.2569 -0.6267 18 6 8.0638 0.6015 0.4610 19 6 9.1237 0.3367 1.3593 20 1 9.4980 -0.6702 1.4711 21 6 9.6874 1.3794 2.1032 22 7 9.4865 2.6215 1.7450 23 14 10.7266 0.9976 3.6077 24 1 12.1479 0.8501 3.2032 25 1 10.6037 2.1059 4.5884 26 1 10.2546 -0.2667 4.2276 27 6 7.2370 1.7285 0.6393 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0083 3.8765 0.2368 34 1 2.9553 6.1427 0.2383 35 1 6.4450 6.8977 -0.6017 36 1 4.8055 7.5631 -0.4075 37 1 6.2871 8.2940 1.4415 38 1 4.9728 7.2584 2.0477 39 1 6.6123 6.5930 1.8534 40 1 6.8840 4.5473 -0.2189 41 1 5.2397 1.1907 -2.0384 42 1 8.4395 -1.1252 -0.7760 43 1 9.8775 3.3442 2.2604 44 1 7.3963 2.4097 1.4621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245786972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:00 Heat of formation + Delta-G solvation = -48.361643 kcal Electronic energy + Delta-G solvation = -27250.078855 eV Core-core repulsion = 23517.458833 eV Total energy + Delta-G solvation = -3732.620022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.34578 -38.92151 -37.93229 -36.18473 -34.18902 -33.94666 -32.23187 -31.55942 -30.24425 -29.64769 -28.47876 -25.54250 -24.91042 -23.28224 -22.83276 -21.76608 -21.55700 -20.82621 -19.62051 -17.68331 -17.18478 -16.47739 -16.29175 -15.60311 -15.26148 -15.18844 -14.99184 -14.37974 -14.27544 -13.83910 -13.72709 -13.44591 -13.30501 -13.06820 -12.77902 -12.74234 -12.27725 -12.14197 -11.92693 -11.73201 -11.61010 -11.53509 -11.38857 -11.26329 -11.16002 -10.99226 -10.97907 -10.76307 -10.57442 -10.29888 -10.04225 -9.81491 -9.29799 -8.79200 -8.58426 -7.96420 -7.89034 -7.32032 -6.78754 -4.40909 0.97505 1.56871 2.67129 2.88946 2.93823 2.98508 3.04005 3.09229 3.28825 3.89102 4.05902 4.64407 4.78833 4.89415 4.96050 4.97346 5.07417 5.14110 5.25945 5.33177 5.38778 5.52414 5.57156 5.62855 5.75822 5.76396 5.77416 5.90059 5.90993 5.98978 6.06164 6.12022 6.25933 6.27811 6.45160 6.58413 6.62473 6.75152 6.79969 6.81649 7.06666 7.10642 7.15925 7.28647 7.70896 7.90653 7.97788 8.22438 8.46932 8.73800 8.77451 9.72913 10.11706 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.004975 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.628867 B = 5626.243439 C = 7732.468980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.364 6.364 4 C 0.493 3.507 5 O -0.463 6.463 6 C -0.131 4.131 7 C -0.064 4.064 8 C -0.147 4.147 9 C -0.050 4.050 10 C -0.087 4.087 11 C -0.147 4.147 12 C -0.115 4.115 13 C 0.058 3.942 14 C -0.099 4.099 15 C 0.033 3.967 16 N -0.473 5.473 17 C -0.014 4.014 18 C 0.060 3.940 19 C -0.454 4.454 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.796 5.796 23 Si 0.908 3.092 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.260 1.260 27 C -0.104 4.104 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.281 0.719 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.497 7.613 0.114 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.283 6.283 4 C 0.336 3.664 5 O -0.348 6.348 6 C -0.132 4.132 7 C -0.082 4.082 8 C -0.165 4.165 9 C -0.050 4.050 10 C -0.124 4.124 11 C -0.205 4.205 12 C -0.133 4.133 13 C 0.056 3.944 14 C -0.101 4.101 15 C -0.126 4.126 16 N -0.181 5.181 17 C -0.174 4.174 18 C 0.056 3.944 19 C -0.484 4.484 20 H 0.099 0.901 21 C -0.141 4.141 22 N -0.422 5.422 23 Si 0.733 3.267 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.130 4.130 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.154 0.846 41 H 0.125 0.875 42 H 0.141 0.859 43 H 0.092 0.908 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.351 6.943 -0.510 14.178 hybrid contribution 0.601 0.305 1.475 1.621 sum -11.750 7.248 0.964 13.840 Atomic orbital electron populations 1.21784 0.93010 1.02675 1.03205 1.22926 0.94807 0.80626 1.02715 1.86505 1.24670 1.31861 1.85237 1.21172 0.80262 0.90396 0.74530 1.91047 1.59018 1.42038 1.42665 1.19104 0.93249 0.90035 1.10781 1.21255 0.99514 0.91518 0.95899 1.20872 0.94559 0.96729 1.04360 1.20075 0.93454 0.95418 0.96044 1.20598 1.01179 0.92459 0.98167 1.21748 1.01914 1.01154 0.95655 1.21212 1.00470 0.90377 1.01279 1.19037 0.90588 0.93837 0.90888 1.19274 0.96535 0.94956 0.99364 1.21352 1.00026 0.92821 0.98405 1.66889 1.04508 1.17972 1.28705 1.22483 0.98703 1.02417 0.93790 1.18376 0.92408 0.91932 0.91692 1.19489 1.14489 0.95502 1.18904 0.90071 1.25898 0.95930 0.94443 0.97874 1.69771 1.36671 1.00044 1.35697 0.86304 0.80051 0.79487 0.80896 1.19392 1.20081 1.18419 1.21669 0.92519 1.00017 0.98788 0.91691 0.91651 0.90485 0.91260 0.91401 0.85010 0.85852 0.90647 0.91045 0.92485 0.92661 0.91972 0.84624 0.87494 0.85884 0.90810 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.16 0.38 -1.00 16 2 C 0.06 0.83 6.20 37.16 0.23 1.06 16 3 O -0.36 -5.72 9.49 -40.62 -0.39 -6.11 16 4 C 0.49 9.38 7.60 34.51 0.26 9.64 16 5 O -0.46 -10.47 12.12 -19.26 -0.23 -10.70 16 6 C -0.13 -2.37 5.88 -104.71 -0.62 -2.98 16 7 C -0.06 -0.92 9.61 -39.20 -0.38 -1.29 16 8 C -0.15 -1.91 9.67 -39.60 -0.38 -2.29 16 9 C -0.05 -0.70 5.13 -104.58 -0.54 -1.24 16 10 C -0.09 -0.97 6.05 -27.88 -0.17 -1.14 16 11 C -0.15 -1.58 9.89 37.16 0.37 -1.21 16 12 C -0.12 -2.04 9.28 -39.30 -0.36 -2.40 16 13 C 0.06 1.16 5.43 -104.53 -0.57 0.60 16 14 C -0.10 -2.38 4.16 -104.84 -0.44 -2.82 16 15 C 0.03 0.82 8.00 -16.94 -0.14 0.69 16 16 N -0.47 -12.46 10.32 -12.26 -0.13 -12.59 16 17 C -0.01 -0.38 10.96 -16.72 -0.18 -0.56 16 18 C 0.06 1.63 5.59 -106.71 -0.60 1.03 16 19 C -0.45 -11.98 9.08 -37.73 -0.34 -12.32 16 20 H 0.08 2.05 7.90 -52.48 -0.41 1.64 16 21 C 0.08 1.87 5.18 -17.35 -0.09 1.78 16 22 N -0.80 -19.88 10.92 55.55 0.61 -19.28 16 23 Si 0.91 18.45 29.59 -169.99 -5.03 13.42 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 27 C -0.10 -2.73 8.43 -38.20 -0.32 -3.05 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.13 1.60 7.62 -52.49 -0.40 1.20 16 34 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 41 H 0.11 2.52 7.81 -52.48 -0.41 2.11 16 42 H 0.12 3.02 8.06 -52.48 -0.42 2.60 16 43 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 44 H 0.13 3.40 6.20 -52.49 -0.33 3.07 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -30.28 373.49 -9.59 -39.87 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.17 Total: 7.26 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -3.88 Total: -17.50 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.48 Total: -31.87 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.62 Total: -16.81 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.28 -9.59 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245786972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.492 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds