Wall clock time and date at job start Tue Mar 31 2020 14:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.46983 * 2 1 4 4 C 1.34746 * 116.99906 * 179.97438 * 3 2 1 5 5 O 1.21498 * 120.00254 * 359.97438 * 4 3 2 6 6 C 1.47505 * 120.00121 * 180.02562 * 4 3 2 7 7 C 1.39572 * 120.21477 * 6.33498 * 6 4 3 8 8 C 1.37909 * 119.95983 * 179.97438 * 7 6 4 9 9 C 1.38522 * 120.41299 * 359.97438 * 8 7 6 10 10 C 1.50710 * 119.78288 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47278 * 89.99727 * 10 9 8 12 12 C 1.38043 * 120.44044 * 359.71945 * 9 8 7 13 13 C 1.39190 * 120.02036 * 0.55791 * 12 9 8 14 14 C 1.48212 * 120.19852 * 179.71951 * 13 12 9 15 15 C 1.39798 * 120.41982 * 238.07101 * 14 13 12 16 16 N 1.31892 * 121.13334 * 180.29086 * 15 14 13 17 17 C 1.31522 * 122.13750 * 359.72285 * 16 15 14 18 18 C 1.40778 * 120.69120 * 359.97438 * 17 16 15 19 19 C 1.41441 * 120.60475 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99579 * 336.14513 * 19 18 17 21 21 C 1.39937 * 120.00216 * 156.15114 * 19 18 17 22 22 N 1.30822 * 120.00085 * 342.86465 * 21 19 18 23 23 Si 1.86801 * 119.99962 * 162.86534 * 21 19 18 24 24 H 1.48503 * 109.47123 * 89.99969 * 23 21 19 25 25 H 1.48497 * 109.47046 * 209.99637 * 23 21 19 26 26 H 1.48505 * 109.47115 * 330.00087 * 23 21 19 27 27 C 1.39250 * 120.42026 * 57.80171 * 14 13 12 28 28 H 1.09000 * 109.47329 * 300.00270 * 1 2 3 29 29 H 1.08994 * 109.46874 * 59.99976 * 1 2 3 30 30 H 1.08999 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46955 * 240.00002 * 2 1 3 32 32 H 1.09000 * 109.46922 * 119.99561 * 2 1 3 33 33 H 1.07997 * 120.02263 * 359.97438 * 7 6 4 34 34 H 1.08007 * 119.79762 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.46772 * 209.99676 * 10 9 8 36 36 H 1.09004 * 109.46631 * 329.99294 * 10 9 8 37 37 H 1.08991 * 109.47139 * 180.02562 * 11 10 9 38 38 H 1.09007 * 109.46669 * 300.00209 * 11 10 9 39 39 H 1.09002 * 109.47137 * 60.00080 * 11 10 9 40 40 H 1.07998 * 119.98960 * 180.28573 * 12 9 8 41 41 H 1.08005 * 119.43213 * 359.97438 * 15 14 13 42 42 H 1.08004 * 119.65802 * 179.97438 * 17 16 15 43 43 H 0.97000 * 120.00342 * 180.02562 * 22 21 19 44 44 H 1.07999 * 120.95973 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0900 0.5820 0.0015 6 6 3.9137 2.9086 0.0011 7 6 3.0744 4.0158 0.1342 8 6 3.6072 5.2878 0.1347 9 6 4.9734 5.4758 0.0041 10 6 5.5404 6.8722 0.0058 11 6 5.8775 7.2840 1.4402 12 6 5.8196 4.3925 -0.1222 13 6 5.3008 3.1009 -0.1308 14 6 6.2051 1.9352 -0.2725 15 6 6.0363 1.0324 -1.3264 16 7 6.8292 -0.0127 -1.4627 17 6 7.8147 -0.2569 -0.6267 18 6 8.0638 0.6015 0.4610 19 6 9.1237 0.3367 1.3593 20 1 9.4980 -0.6702 1.4711 21 6 9.6874 1.3794 2.1032 22 7 9.4865 2.6215 1.7450 23 14 10.7266 0.9976 3.6077 24 1 12.1479 0.8501 3.2032 25 1 10.6037 2.1059 4.5884 26 1 10.2546 -0.2667 4.2276 27 6 7.2370 1.7285 0.6393 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0083 3.8765 0.2368 34 1 2.9553 6.1427 0.2383 35 1 6.4450 6.8977 -0.6017 36 1 4.8055 7.5631 -0.4075 37 1 6.2871 8.2940 1.4415 38 1 4.9728 7.2584 2.0477 39 1 6.6123 6.5930 1.8534 40 1 6.8840 4.5473 -0.2189 41 1 5.2397 1.1907 -2.0384 42 1 8.4395 -1.1252 -0.7760 43 1 9.8775 3.3442 2.2604 44 1 7.3963 2.4097 1.4621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245786972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:59 Heat of formation + Delta-G solvation = -63.202270 kcal Electronic energy + Delta-G solvation = -27250.722393 eV Core-core repulsion = 23517.458833 eV Total energy + Delta-G solvation = -3733.263560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77491 -40.37716 -39.63852 -37.59891 -35.95612 -35.29602 -33.71057 -32.58207 -32.22414 -30.81814 -30.04612 -27.52642 -26.08371 -24.66806 -24.01354 -23.49506 -22.88882 -22.32637 -21.09106 -19.21126 -18.87649 -17.89233 -17.67892 -17.35886 -17.06184 -16.57801 -16.34576 -16.05871 -15.51749 -15.13247 -15.09269 -14.57811 -14.51352 -14.36346 -14.21247 -13.95168 -13.61881 -13.58529 -13.41705 -13.34244 -13.19115 -12.92464 -12.79967 -12.64939 -12.56299 -12.40564 -12.20388 -12.02163 -11.84998 -11.62003 -11.51857 -11.49714 -11.16767 -10.38076 -9.90282 -9.84800 -9.76869 -9.17192 -8.67772 -6.43616 -0.37566 0.24000 0.85985 1.05901 1.36287 1.46457 1.52106 1.59446 1.64313 2.17346 2.68483 2.78697 3.59829 3.66105 3.74395 3.83385 3.97525 3.98937 4.09532 4.10351 4.24476 4.33386 4.35188 4.49208 4.53841 4.55035 4.65210 4.76849 4.79773 4.91005 4.92695 5.00337 5.02346 5.10468 5.12599 5.14217 5.17526 5.23047 5.32617 5.39111 5.42140 5.51187 5.60399 5.74621 5.86220 5.92721 6.00647 6.46560 6.74928 6.76923 6.81013 7.70210 8.24940 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.004975 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.628867 B = 5626.243439 C = 7732.468980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.054 3.946 3 O -0.352 6.352 4 C 0.494 3.506 5 O -0.513 6.513 6 C -0.148 4.148 7 C -0.050 4.050 8 C -0.126 4.126 9 C -0.039 4.039 10 C -0.085 4.085 11 C -0.146 4.146 12 C -0.129 4.129 13 C 0.018 3.982 14 C -0.082 4.082 15 C 0.022 3.978 16 N -0.486 5.486 17 C -0.043 4.043 18 C 0.038 3.962 19 C -0.487 4.487 20 H 0.082 0.918 21 C 0.038 3.962 22 N -0.816 5.816 23 Si 0.985 3.015 24 H -0.258 1.258 25 H -0.263 1.263 26 H -0.261 1.261 27 C -0.129 4.129 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.131 0.869 43 H 0.292 0.708 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.762 10.599 1.271 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.339 3.661 5 O -0.401 6.401 6 C -0.150 4.150 7 C -0.068 4.068 8 C -0.144 4.144 9 C -0.039 4.039 10 C -0.122 4.122 11 C -0.203 4.203 12 C -0.147 4.147 13 C 0.017 3.983 14 C -0.084 4.084 15 C -0.137 4.137 16 N -0.193 5.193 17 C -0.202 4.202 18 C 0.034 3.966 19 C -0.516 4.516 20 H 0.100 0.900 21 C -0.178 4.178 22 N -0.442 5.442 23 Si 0.805 3.195 24 H -0.183 1.183 25 H -0.187 1.187 26 H -0.185 1.185 27 C -0.155 4.155 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.181 0.819 34 H 0.191 0.809 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.148 0.852 43 H 0.103 0.897 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.646 9.945 0.625 17.714 hybrid contribution 1.170 -0.486 1.082 1.666 sum -13.476 9.459 1.707 16.553 Atomic orbital electron populations 1.21793 0.89282 1.04420 1.04061 1.23251 0.97581 0.79299 1.01837 1.86497 1.22675 1.33368 1.84440 1.21489 0.80977 0.90394 0.73209 1.91026 1.60298 1.43556 1.45248 1.19181 0.92723 0.90875 1.12176 1.21620 1.00499 0.90782 0.93879 1.21412 0.94307 0.97607 1.01060 1.20441 0.93870 0.95800 0.93763 1.20704 1.01959 0.90940 0.98646 1.21741 1.01781 1.01607 0.95194 1.21126 1.00174 0.90739 1.02645 1.18950 0.91247 0.93286 0.94781 1.19509 0.95776 0.95600 0.97490 1.21532 1.00046 0.93024 0.99094 1.66830 1.04770 1.18765 1.28964 1.22610 0.99735 1.03356 0.94539 1.18722 0.93152 0.92559 0.92191 1.19770 1.15234 0.96311 1.20289 0.89992 1.26783 0.96864 0.93840 1.00318 1.69816 1.36717 1.00987 1.36634 0.85166 0.78353 0.79380 0.76636 1.18252 1.18684 1.18533 1.21627 0.94062 1.00218 0.99552 0.90767 0.90759 0.88311 0.92277 0.92391 0.81905 0.80917 0.91056 0.87567 0.90422 0.91630 0.94643 0.86677 0.86754 0.85154 0.89721 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 10.29 71.98 0.74 -1.50 16 2 C 0.05 1.41 6.20 71.98 0.45 1.86 16 3 O -0.35 -10.81 9.49 -56.56 -0.54 -11.35 16 4 C 0.49 19.15 7.60 70.27 0.53 19.69 16 5 O -0.51 -24.48 12.12 19.84 0.24 -24.24 16 6 C -0.15 -5.35 5.88 -19.92 -0.12 -5.47 16 7 C -0.05 -1.28 9.61 22.51 0.22 -1.06 16 8 C -0.13 -2.69 9.67 22.26 0.22 -2.48 16 9 C -0.04 -0.99 5.13 -19.84 -0.10 -1.10 16 10 C -0.09 -1.62 6.05 29.85 0.18 -1.44 16 11 C -0.15 -2.70 9.89 71.98 0.71 -1.99 16 12 C -0.13 -4.62 9.28 22.45 0.21 -4.41 16 13 C 0.02 0.77 5.43 -19.81 -0.11 0.66 16 14 C -0.08 -4.18 4.16 -20.01 -0.08 -4.26 16 15 C 0.02 1.18 8.00 85.06 0.68 1.86 16 16 N -0.49 -27.24 10.32 -192.70 -1.99 -29.23 16 17 C -0.04 -2.47 10.96 85.36 0.94 -1.53 16 18 C 0.04 2.20 5.59 -21.22 -0.12 2.08 16 19 C -0.49 -27.01 9.08 23.47 0.21 -26.80 16 20 H 0.08 4.36 7.90 -2.91 -0.02 4.34 16 21 C 0.04 1.92 5.18 85.26 0.44 2.36 16 22 N -0.82 -42.03 10.92 21.82 0.24 -41.79 16 23 Si 0.98 38.11 29.59 68.60 2.03 40.14 16 24 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 25 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 26 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 27 C -0.13 -7.20 8.43 23.17 0.20 -7.01 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.16 3.16 7.62 -2.91 -0.02 3.14 16 34 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 36 H 0.11 1.35 8.08 -2.38 -0.02 1.33 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.11 5.73 7.81 -2.91 -0.02 5.70 16 42 H 0.13 6.90 8.06 -2.91 -0.02 6.88 16 43 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 44 H 0.12 6.63 6.20 -2.91 -0.02 6.61 16 Total: -1.00 -72.04 373.49 6.18 -65.86 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 1.00 Total: 31.13 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 5.19 Total: -30.52 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -1.75 Total: -71.01 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.30 Total: -35.60 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -72.04 6.18 -65.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245786972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.659 kcal (2) G-P(sol) polarization free energy of solvation -72.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds