Wall clock time and date at job start Tue Mar 31 2020 14:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45204 * 109.47287 * 2 1 4 4 C 1.34756 * 117.00260 * 179.97438 * 3 2 1 5 5 O 1.21508 * 119.99994 * 0.02562 * 4 3 2 6 6 C 1.47473 * 120.00027 * 180.02562 * 4 3 2 7 7 C 1.39477 * 120.23260 * 0.25603 * 6 4 3 8 8 C 1.38009 * 119.99114 * 180.26098 * 7 6 4 9 9 C 1.38590 * 120.47309 * 359.73899 * 8 7 6 10 10 C 1.50709 * 119.76273 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46802 * 270.01891 * 10 9 8 12 12 C 1.37942 * 120.47538 * 0.02562 * 9 8 7 13 13 C 1.39551 * 119.98833 * 0.02562 * 12 9 8 14 14 C 1.47597 * 120.23369 * 179.97438 * 13 12 9 15 15 C 1.39785 * 120.65881 * 64.97801 * 14 13 12 16 16 C 1.38356 * 118.46424 * 180.02562 * 15 14 13 17 17 C 1.39086 * 119.73533 * 359.97438 * 16 15 14 18 18 N 1.31264 * 121.35955 * 0.02562 * 17 16 15 19 19 C 1.33695 * 121.64659 * 359.97438 * 18 17 16 20 20 C 1.40780 * 119.94135 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99868 * 179.97438 * 20 19 18 22 22 C 1.40218 * 120.00545 * 0.02562 * 20 19 18 23 23 N 1.30650 * 119.99600 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00382 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47191 * 89.99689 * 24 22 20 26 26 H 1.48501 * 109.47254 * 209.99972 * 24 22 20 27 27 H 1.48498 * 109.46945 * 329.99522 * 24 22 20 28 28 H 1.09000 * 109.47254 * 299.99839 * 1 2 3 29 29 H 1.08998 * 109.47324 * 59.99836 * 1 2 3 30 30 H 1.09001 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47653 * 239.99859 * 2 1 3 32 32 H 1.08998 * 109.47324 * 120.00164 * 2 1 3 33 33 H 1.08004 * 120.00639 * 359.97438 * 7 6 4 34 34 H 1.08000 * 119.75896 * 179.72370 * 8 7 6 35 35 H 1.08999 * 109.46877 * 30.02133 * 10 9 8 36 36 H 1.08998 * 109.46809 * 150.02046 * 10 9 8 37 37 H 1.09001 * 109.46700 * 179.97438 * 11 10 9 38 38 H 1.08996 * 109.47293 * 300.00214 * 11 10 9 39 39 H 1.09002 * 109.46864 * 60.00305 * 11 10 9 40 40 H 1.08003 * 120.00700 * 180.02562 * 12 9 8 41 41 H 1.07998 * 120.76461 * 0.04440 * 15 14 13 42 42 H 1.08007 * 120.12834 * 180.02562 * 16 15 14 43 43 H 1.07997 * 119.31983 * 180.28266 * 17 16 15 44 44 H 0.97006 * 120.00116 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0901 0.5820 0.0005 6 6 3.9136 2.9083 0.0011 7 6 3.0684 4.0179 0.0065 8 6 3.6012 5.2910 0.0016 9 6 4.9744 5.4781 -0.0032 10 6 5.5390 6.8755 -0.0091 11 6 5.7251 7.3442 -1.4536 12 6 5.8282 4.3947 -0.0037 13 6 5.3105 3.0987 0.0001 14 6 6.2191 1.9355 -0.0010 15 6 7.0623 1.6886 1.0862 16 6 7.8959 0.5855 1.0370 17 6 7.8769 -0.2443 -0.0791 18 7 7.0815 -0.0043 -1.0953 19 6 6.2539 1.0457 -1.1056 20 6 5.4165 1.2694 -2.2149 21 1 4.7473 2.1171 -2.2241 22 6 5.4503 0.3912 -3.3075 23 7 6.2594 -0.6345 -3.2962 24 14 4.3385 0.6877 -4.7790 25 1 5.0415 1.5468 -5.7654 26 1 3.9955 -0.6121 -5.4101 27 1 3.0946 1.3639 -4.3313 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 1.9971 3.8808 0.0099 34 1 2.9433 6.1474 0.0013 35 1 4.8517 7.5471 0.5052 36 1 6.5020 6.8803 0.5014 37 1 6.1330 8.3550 -1.4579 38 1 6.4123 6.6724 -1.9679 39 1 4.7620 7.3392 -1.9641 40 1 6.8971 4.5493 -0.0071 41 1 7.0627 2.3437 1.9448 42 1 8.5580 0.3691 1.8624 43 1 8.5271 -1.1061 -0.1084 44 1 6.2832 -1.2419 -4.0522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245787405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:04 Heat of formation + Delta-G solvation = -33.173809 kcal Electronic energy + Delta-G solvation = -28120.510049 eV Core-core repulsion = 24388.548621 eV Total energy + Delta-G solvation = -3731.961428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.00148 -38.62353 -37.72442 -35.76395 -33.94543 -33.60112 -31.98051 -31.30940 -30.18527 -29.48444 -28.47220 -25.71699 -24.61241 -23.08582 -22.64697 -21.54157 -21.30220 -20.64665 -19.35483 -17.48298 -17.26431 -16.20668 -15.93680 -15.56407 -15.20580 -14.98464 -14.40672 -14.14682 -14.08038 -13.65326 -13.58666 -13.35824 -13.16250 -12.80485 -12.62982 -12.52395 -12.18100 -11.92223 -11.90347 -11.70308 -11.36591 -11.25806 -11.21841 -11.18456 -11.03753 -10.95356 -10.77767 -10.60443 -10.32257 -9.97374 -9.88046 -9.59064 -9.32086 -8.48414 -8.29906 -7.99636 -7.46385 -7.21259 -6.38855 -4.46011 1.30181 1.82789 2.79115 3.03763 3.06047 3.09816 3.23588 3.30543 3.37219 3.93492 4.35243 4.78333 4.93931 5.06224 5.19344 5.20279 5.33062 5.38979 5.44657 5.46713 5.59342 5.68277 5.75613 5.81937 5.94525 5.97694 6.01023 6.04010 6.10740 6.13344 6.15324 6.22800 6.29486 6.42771 6.53470 6.58385 6.74558 6.89743 6.93340 6.99697 7.13598 7.21481 7.32744 7.42829 7.64329 7.78171 8.09325 8.25218 8.67666 8.68578 8.99659 10.16390 10.32924 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.006303 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.545558 B = 4440.970094 C = 5228.612829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.065 3.935 3 O -0.370 6.370 4 C 0.490 3.510 5 O -0.444 6.444 6 C -0.123 4.123 7 C -0.066 4.066 8 C -0.157 4.157 9 C -0.055 4.055 10 C -0.084 4.084 11 C -0.147 4.147 12 C -0.132 4.132 13 C 0.092 3.908 14 C -0.233 4.233 15 C -0.032 4.032 16 C -0.323 4.323 17 C 0.133 3.867 18 N -0.480 5.480 19 C 0.308 3.692 20 C -0.410 4.410 21 H 0.078 0.922 22 C 0.072 3.928 23 N -0.707 5.707 24 Si 0.894 3.106 25 H -0.266 1.266 26 H -0.274 1.274 27 H -0.260 1.260 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.124 0.876 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.140 8.758 3.973 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.009 4.009 3 O -0.289 6.289 4 C 0.332 3.668 5 O -0.327 6.327 6 C -0.124 4.124 7 C -0.084 4.084 8 C -0.175 4.175 9 C -0.055 4.055 10 C -0.122 4.122 11 C -0.204 4.204 12 C -0.151 4.151 13 C 0.091 3.909 14 C -0.238 4.238 15 C -0.057 4.057 16 C -0.346 4.346 17 C -0.035 4.035 18 N -0.191 5.191 19 C 0.184 3.816 20 C -0.440 4.440 21 H 0.096 0.904 22 C -0.154 4.154 23 N -0.328 5.328 24 Si 0.718 3.282 25 H -0.191 1.191 26 H -0.199 1.199 27 H -0.184 1.184 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.142 0.858 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.133 0.867 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.891 7.673 3.067 10.759 hybrid contribution -0.514 0.366 0.102 0.639 sum -7.404 8.039 3.169 11.379 Atomic orbital electron populations 1.21772 0.93403 1.02399 1.03011 1.22829 0.94434 0.81133 1.02530 1.86475 1.25197 1.31356 1.85861 1.20961 0.79995 0.90440 0.75393 1.91006 1.58879 1.41745 1.41100 1.19195 0.93301 0.89900 1.10003 1.21263 0.99492 0.91693 0.95961 1.20786 0.94321 0.96543 1.05828 1.19948 0.93520 0.95018 0.97038 1.20561 1.01058 0.92790 0.97768 1.21748 1.02204 1.00622 0.95864 1.21135 0.99553 0.90782 1.03586 1.18747 0.90469 0.93113 0.88613 1.19165 1.04690 1.00194 0.99792 1.20730 0.93718 0.95799 0.95424 1.21113 1.08994 1.02452 1.02019 1.22537 0.95126 0.96119 0.89766 1.68705 1.06778 1.19060 1.24538 1.18164 0.88451 0.85346 0.89599 1.19484 1.17152 1.08463 0.98946 0.90415 1.26065 0.95385 0.94438 0.99530 1.70093 1.26917 1.08030 1.27747 0.86527 0.81356 0.78920 0.81430 1.19129 1.19915 1.18423 0.91879 0.91743 0.90741 0.91299 0.91801 0.85407 0.86333 0.91247 0.91073 0.92709 0.92172 0.92543 0.85798 0.88972 0.88954 0.86702 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.29 37.15 0.38 -1.36 16 2 C 0.06 1.06 6.20 37.15 0.23 1.29 16 3 O -0.37 -6.99 9.47 -40.64 -0.38 -7.37 16 4 C 0.49 10.83 7.00 34.49 0.24 11.07 16 5 O -0.44 -11.42 11.65 -19.27 -0.22 -11.64 16 6 C -0.12 -2.53 4.88 -104.63 -0.51 -3.04 16 7 C -0.07 -1.10 9.61 -39.20 -0.38 -1.48 16 8 C -0.16 -2.31 9.67 -39.54 -0.38 -2.69 16 9 C -0.06 -0.83 5.13 -104.60 -0.54 -1.37 16 10 C -0.08 -0.98 6.05 -27.88 -0.17 -1.15 16 11 C -0.15 -1.62 9.89 37.16 0.37 -1.26 16 12 C -0.13 -2.41 9.38 -39.20 -0.37 -2.78 16 13 C 0.09 1.98 4.49 -104.55 -0.47 1.51 16 14 C -0.23 -5.77 3.98 -104.11 -0.41 -6.19 16 15 C -0.03 -0.76 9.88 -38.96 -0.39 -1.14 16 16 C -0.32 -7.51 10.10 -39.22 -0.40 -7.91 16 17 C 0.13 3.35 11.17 -17.48 -0.20 3.16 16 18 N -0.48 -13.58 7.85 -10.90 -0.09 -13.67 16 19 C 0.31 8.50 4.80 -84.70 -0.41 8.10 16 20 C -0.41 -11.18 6.91 -37.88 -0.26 -11.44 16 21 H 0.08 2.07 5.88 -52.49 -0.31 1.76 16 22 C 0.07 1.89 5.50 -17.31 -0.10 1.79 16 23 N -0.71 -19.23 11.46 55.56 0.64 -18.59 16 24 Si 0.89 19.28 29.56 -169.99 -5.03 14.25 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.13 1.89 7.61 -52.48 -0.40 1.49 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.07 0.68 8.08 -51.93 -0.42 0.27 16 36 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 43 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 44 H 0.27 6.71 8.29 -40.82 -0.34 6.38 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -31.73 369.61 -9.44 -41.17 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.18 Total: 5.17 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -3.75 Total: -14.88 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.55 Total: -32.26 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.61 Total: -19.01 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.73 -9.44 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245787405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.995 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds