Wall clock time and date at job start Tue Mar 31 2020 14:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45204 * 109.47287 * 2 1 4 4 C 1.34756 * 117.00260 * 179.97438 * 3 2 1 5 5 O 1.21508 * 119.99994 * 0.02562 * 4 3 2 6 6 C 1.47473 * 120.00027 * 180.02562 * 4 3 2 7 7 C 1.39477 * 120.23260 * 0.25603 * 6 4 3 8 8 C 1.38009 * 119.99114 * 180.26098 * 7 6 4 9 9 C 1.38590 * 120.47309 * 359.73899 * 8 7 6 10 10 C 1.50709 * 119.76273 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46802 * 270.01891 * 10 9 8 12 12 C 1.37942 * 120.47538 * 0.02562 * 9 8 7 13 13 C 1.39551 * 119.98833 * 0.02562 * 12 9 8 14 14 C 1.47597 * 120.23369 * 179.97438 * 13 12 9 15 15 C 1.39785 * 120.65881 * 64.97801 * 14 13 12 16 16 C 1.38356 * 118.46424 * 180.02562 * 15 14 13 17 17 C 1.39086 * 119.73533 * 359.97438 * 16 15 14 18 18 N 1.31264 * 121.35955 * 0.02562 * 17 16 15 19 19 C 1.33695 * 121.64659 * 359.97438 * 18 17 16 20 20 C 1.40780 * 119.94135 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99868 * 179.97438 * 20 19 18 22 22 C 1.40218 * 120.00545 * 0.02562 * 20 19 18 23 23 N 1.30650 * 119.99600 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00382 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47191 * 89.99689 * 24 22 20 26 26 H 1.48501 * 109.47254 * 209.99972 * 24 22 20 27 27 H 1.48498 * 109.46945 * 329.99522 * 24 22 20 28 28 H 1.09000 * 109.47254 * 299.99839 * 1 2 3 29 29 H 1.08998 * 109.47324 * 59.99836 * 1 2 3 30 30 H 1.09001 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47653 * 239.99859 * 2 1 3 32 32 H 1.08998 * 109.47324 * 120.00164 * 2 1 3 33 33 H 1.08004 * 120.00639 * 359.97438 * 7 6 4 34 34 H 1.08000 * 119.75896 * 179.72370 * 8 7 6 35 35 H 1.08999 * 109.46877 * 30.02133 * 10 9 8 36 36 H 1.08998 * 109.46809 * 150.02046 * 10 9 8 37 37 H 1.09001 * 109.46700 * 179.97438 * 11 10 9 38 38 H 1.08996 * 109.47293 * 300.00214 * 11 10 9 39 39 H 1.09002 * 109.46864 * 60.00305 * 11 10 9 40 40 H 1.08003 * 120.00700 * 180.02562 * 12 9 8 41 41 H 1.07998 * 120.76461 * 0.04440 * 15 14 13 42 42 H 1.08007 * 120.12834 * 180.02562 * 16 15 14 43 43 H 1.07997 * 119.31983 * 180.28266 * 17 16 15 44 44 H 0.97006 * 120.00116 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0901 0.5820 0.0005 6 6 3.9136 2.9083 0.0011 7 6 3.0684 4.0179 0.0065 8 6 3.6012 5.2910 0.0016 9 6 4.9744 5.4781 -0.0032 10 6 5.5390 6.8755 -0.0091 11 6 5.7251 7.3442 -1.4536 12 6 5.8282 4.3947 -0.0037 13 6 5.3105 3.0987 0.0001 14 6 6.2191 1.9355 -0.0010 15 6 7.0623 1.6886 1.0862 16 6 7.8959 0.5855 1.0370 17 6 7.8769 -0.2443 -0.0791 18 7 7.0815 -0.0043 -1.0953 19 6 6.2539 1.0457 -1.1056 20 6 5.4165 1.2694 -2.2149 21 1 4.7473 2.1171 -2.2241 22 6 5.4503 0.3912 -3.3075 23 7 6.2594 -0.6345 -3.2962 24 14 4.3385 0.6877 -4.7790 25 1 5.0415 1.5468 -5.7654 26 1 3.9955 -0.6121 -5.4101 27 1 3.0946 1.3639 -4.3313 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 1.9971 3.8808 0.0099 34 1 2.9433 6.1474 0.0013 35 1 4.8517 7.5471 0.5052 36 1 6.5020 6.8803 0.5014 37 1 6.1330 8.3550 -1.4579 38 1 6.4123 6.6724 -1.9679 39 1 4.7620 7.3392 -1.9641 40 1 6.8971 4.5493 -0.0071 41 1 7.0627 2.3437 1.9448 42 1 8.5580 0.3691 1.8624 43 1 8.5271 -1.1061 -0.1084 44 1 6.2832 -1.2419 -4.0522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245787405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:03 Heat of formation + Delta-G solvation = -49.324526 kcal Electronic energy + Delta-G solvation = -28121.210396 eV Core-core repulsion = 24388.548621 eV Total energy + Delta-G solvation = -3732.661775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58148 -40.18572 -39.40396 -37.37554 -35.52227 -35.16952 -33.53674 -32.53490 -32.08275 -30.77453 -30.05546 -27.60383 -25.91232 -24.52944 -23.96273 -23.20812 -22.78688 -22.23475 -20.83716 -19.39793 -18.79666 -17.77569 -17.53543 -17.28489 -16.64533 -16.31824 -16.12696 -15.92962 -15.43552 -15.08459 -14.98530 -14.55491 -14.47872 -14.25105 -14.03736 -13.86221 -13.66312 -13.56274 -13.29361 -12.97392 -12.94660 -12.87202 -12.81516 -12.57377 -12.50453 -12.36407 -12.07403 -11.92334 -11.76931 -11.56333 -11.46261 -11.30337 -11.17840 -10.13158 -9.79439 -9.67041 -9.36241 -9.04617 -8.29614 -6.43602 -0.14506 0.42243 0.97509 1.21282 1.27770 1.40464 1.47574 1.77626 1.85048 2.14480 2.84501 2.91728 3.79290 3.92639 3.94129 3.98527 3.99164 4.13200 4.14658 4.30122 4.33617 4.35035 4.42410 4.50212 4.57978 4.62168 4.73225 4.79562 4.83918 4.91898 5.00055 5.06146 5.08576 5.13643 5.14166 5.19527 5.23008 5.37108 5.45093 5.48162 5.54578 5.64351 5.70895 5.77545 5.89544 6.07371 6.17296 6.31357 6.74827 7.03687 7.06791 8.24145 8.44042 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.006303 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.545558 B = 4440.970094 C = 5228.612829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 O -0.363 6.363 4 C 0.488 3.512 5 O -0.494 6.494 6 C -0.150 4.150 7 C -0.061 4.061 8 C -0.140 4.140 9 C -0.042 4.042 10 C -0.082 4.082 11 C -0.147 4.147 12 C -0.142 4.142 13 C 0.057 3.943 14 C -0.229 4.229 15 C -0.050 4.050 16 C -0.316 4.316 17 C 0.104 3.896 18 N -0.521 5.521 19 C 0.283 3.717 20 C -0.435 4.435 21 H 0.072 0.928 22 C 0.026 3.974 23 N -0.751 5.751 24 Si 0.962 3.038 25 H -0.255 1.255 26 H -0.264 1.264 27 H -0.260 1.260 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.132 0.868 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 12.201 4.500 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 O -0.281 6.281 4 C 0.332 3.668 5 O -0.381 6.381 6 C -0.151 4.151 7 C -0.079 4.079 8 C -0.157 4.157 9 C -0.042 4.042 10 C -0.119 4.119 11 C -0.204 4.204 12 C -0.160 4.160 13 C 0.056 3.944 14 C -0.233 4.233 15 C -0.074 4.074 16 C -0.339 4.339 17 C -0.061 4.061 18 N -0.233 5.233 19 C 0.159 3.841 20 C -0.466 4.466 21 H 0.091 0.909 22 C -0.196 4.196 23 N -0.373 5.373 24 Si 0.782 3.218 25 H -0.179 1.179 26 H -0.188 1.188 27 H -0.184 1.184 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.182 0.818 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.078 11.127 3.622 14.810 hybrid contribution 0.147 -0.569 0.115 0.599 sum -8.931 10.559 3.736 14.325 Atomic orbital electron populations 1.21776 0.89246 1.04343 1.03975 1.23125 0.97561 0.79831 1.01207 1.86470 1.23622 1.32805 1.85216 1.21462 0.80556 0.90829 0.73939 1.90985 1.60055 1.43337 1.43735 1.19307 0.93457 0.90246 1.12123 1.21551 1.00177 0.91389 0.94811 1.21303 0.94669 0.96985 1.02787 1.20387 0.93603 0.96006 0.94182 1.20670 1.02065 0.90650 0.98531 1.21750 1.02021 1.01484 0.95143 1.21208 1.00181 0.90472 1.04128 1.18790 0.90714 0.93305 0.91586 1.19526 1.04447 1.00460 0.98914 1.21126 0.93783 0.96407 0.96099 1.21444 1.08800 1.01644 1.02014 1.22933 0.95557 0.97397 0.90256 1.68611 1.08138 1.20263 1.26300 1.18532 0.88741 0.85966 0.90904 1.19556 1.17986 1.09106 0.99948 0.90942 1.26923 0.96658 0.93902 1.02142 1.70199 1.28949 1.09216 1.28920 0.85508 0.79191 0.79255 0.77804 1.17892 1.18845 1.18352 0.90403 0.91180 0.88315 0.93595 0.92379 0.83236 0.81779 0.88181 0.90405 0.90314 0.94273 0.92268 0.85861 0.86282 0.85861 0.85081 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 10.29 71.98 0.74 -2.22 16 2 C 0.06 1.88 6.20 71.98 0.45 2.32 16 3 O -0.36 -13.82 9.47 -56.66 -0.54 -14.35 16 4 C 0.49 22.26 7.00 70.26 0.49 22.75 16 5 O -0.49 -26.94 11.65 19.81 0.23 -26.71 16 6 C -0.15 -6.20 4.88 -19.87 -0.10 -6.29 16 7 C -0.06 -1.90 9.61 22.51 0.22 -1.69 16 8 C -0.14 -3.51 9.67 22.30 0.22 -3.29 16 9 C -0.04 -1.13 5.13 -19.85 -0.10 -1.23 16 10 C -0.08 -1.54 6.05 29.85 0.18 -1.36 16 11 C -0.15 -2.71 9.89 71.98 0.71 -1.99 16 12 C -0.14 -5.04 9.38 22.52 0.21 -4.83 16 13 C 0.06 2.50 4.49 -19.82 -0.09 2.41 16 14 C -0.23 -11.75 3.98 -19.53 -0.08 -11.83 16 15 C -0.05 -2.38 9.88 22.67 0.22 -2.16 16 16 C -0.32 -14.99 10.10 22.50 0.23 -14.76 16 17 C 0.10 5.51 11.17 84.98 0.95 6.46 16 18 N -0.52 -31.25 7.85 -188.39 -1.48 -32.73 16 19 C 0.28 16.49 4.80 40.38 0.19 16.68 16 20 C -0.44 -24.96 6.91 23.37 0.16 -24.79 16 21 H 0.07 4.06 5.88 -2.91 -0.02 4.04 16 22 C 0.03 1.40 5.50 85.35 0.47 1.87 16 23 N -0.75 -43.15 11.46 21.87 0.25 -42.90 16 24 Si 0.96 40.88 29.56 68.60 2.03 42.91 16 25 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 27 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.15 3.93 7.61 -2.91 -0.02 3.90 16 34 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.10 1.35 8.08 -2.39 -0.02 1.33 16 36 H 0.08 1.40 8.08 -2.39 -0.02 1.39 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 41 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 42 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 43 H 0.13 6.17 8.06 -2.91 -0.02 6.15 16 44 H 0.28 14.40 8.29 -92.70 -0.77 13.63 16 Total: -1.00 -75.55 369.61 6.57 -68.98 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 1.00 Total: 28.76 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 5.07 Total: -23.95 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -1.23 Total: -75.63 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.31 Total: -41.07 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -75.55 6.57 -68.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245787405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.654 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds