Wall clock time and date at job start Tue Mar 31 2020 15:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47069 * 2 1 4 4 C 1.52996 * 109.47241 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47387 * 179.97438 * 4 3 2 6 6 C 1.36938 * 119.99786 * 275.00035 * 5 4 3 7 7 H 1.08004 * 120.00344 * 12.83122 * 6 5 4 8 8 C 1.38814 * 119.99985 * 192.83285 * 6 5 4 9 9 N 1.31620 * 119.99918 * 10.80662 * 8 6 5 10 10 Si 1.86805 * 120.00152 * 190.81255 * 8 6 5 11 11 H 1.48500 * 109.47080 * 59.99820 * 10 8 6 12 12 H 1.48496 * 109.46952 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46956 * 300.00068 * 10 8 6 14 14 S 1.65603 * 120.00151 * 94.99426 * 5 4 3 15 15 O 1.42100 * 106.39758 * 109.10486 * 14 5 4 16 16 O 1.42095 * 106.40199 * 336.18542 * 14 5 4 17 17 C 1.76197 * 107.21800 * 222.63986 * 14 5 4 18 18 C 1.38228 * 120.00045 * 205.26781 * 17 14 5 19 19 C 1.50697 * 119.99993 * 0.09716 * 18 17 14 20 20 C 1.38244 * 120.00240 * 179.97438 * 18 17 14 21 21 C 1.38238 * 119.99618 * 0.09670 * 20 18 17 22 22 C 1.50699 * 119.99614 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99991 * 0.02562 * 21 20 18 24 24 C 1.38236 * 119.99857 * 25.40937 * 17 14 5 25 25 C 1.50698 * 120.00219 * 359.97438 * 24 17 14 26 26 H 1.09000 * 109.47544 * 60.00184 * 1 2 3 27 27 H 1.09007 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47505 * 299.99677 * 1 2 3 29 29 H 1.09004 * 109.47536 * 239.99998 * 2 1 3 30 30 H 1.09000 * 109.47544 * 119.99816 * 2 1 3 31 31 H 1.08991 * 109.47317 * 60.00188 * 3 2 1 32 32 H 1.09007 * 109.46952 * 299.99966 * 3 2 1 33 33 H 1.09004 * 109.47715 * 59.99783 * 4 3 2 34 34 H 1.09000 * 109.47193 * 299.99707 * 4 3 2 35 35 H 0.97000 * 120.00001 * 184.81189 * 9 8 6 36 36 H 1.09005 * 109.47128 * 276.56875 * 19 18 17 37 37 H 1.08992 * 109.47792 * 36.57144 * 19 18 17 38 38 H 1.09009 * 109.47355 * 156.57580 * 19 18 17 39 39 H 1.07994 * 119.99916 * 180.36940 * 20 18 17 40 40 H 1.08992 * 109.47073 * 90.00195 * 22 21 20 41 41 H 1.09008 * 109.46533 * 209.99859 * 22 21 20 42 42 H 1.08998 * 109.47223 * 329.99281 * 22 21 20 43 43 H 1.07997 * 119.99899 * 179.97438 * 23 21 20 44 44 H 1.09003 * 109.46726 * 262.43863 * 25 24 17 45 45 H 1.09001 * 109.47075 * 22.43684 * 25 24 17 46 46 H 1.08994 * 109.47415 * 142.44005 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.1885 3.5034 -1.1829 7 1 3.7439 3.1089 -2.0847 8 6 4.8921 4.6993 -1.2219 9 7 5.6103 5.0744 -0.1847 10 14 4.8194 5.7766 -2.7463 11 1 3.4130 6.1793 -3.0012 12 1 5.6505 6.9890 -2.5356 13 1 5.3364 5.0181 -3.9135 14 16 4.4526 3.5633 1.4270 15 8 5.8683 3.6853 1.4381 16 8 3.7226 2.8891 2.4428 17 6 3.8124 5.2034 1.3593 18 6 4.3917 6.2033 2.1178 19 6 5.5722 5.8911 3.0009 20 6 3.8898 7.4903 2.0643 21 6 2.8072 7.7768 1.2537 22 6 2.2597 9.1796 1.1958 23 6 2.2263 6.7763 0.4972 24 6 2.7289 5.4896 0.5499 25 6 2.0957 4.3989 -0.2750 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6765 1.9564 -0.8901 33 1 3.9330 0.9288 -0.8908 34 1 3.9336 0.9287 0.8891 35 1 6.0453 5.9414 -0.1839 36 1 5.2193 5.4864 3.9495 37 1 6.2108 5.1581 2.5083 38 1 6.1404 6.8033 3.1840 39 1 4.3462 8.2728 2.6523 40 1 2.7659 9.7349 0.4063 41 1 1.1904 9.1439 0.9869 42 1 2.4266 9.6746 2.1525 43 1 1.3803 7.0000 -0.1357 44 1 2.4853 4.4401 -1.2922 45 1 2.3290 3.4291 0.1645 46 1 1.0149 4.5387 -0.2940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251485914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:10 Heat of formation + Delta-G solvation = -2.251215 kcal Electronic energy + Delta-G solvation = -28627.754817 eV Core-core repulsion = 25032.578245 eV Total energy + Delta-G solvation = -3595.176572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -38.89770 -37.18052 -35.69879 -34.35731 -34.18847 -32.88532 -32.18861 -31.55222 -28.13639 -27.34622 -26.17979 -25.94746 -24.59705 -22.40583 -21.03578 -20.13620 -19.91281 -18.99915 -17.17907 -16.06690 -15.63397 -15.28721 -15.03210 -14.53571 -14.13071 -13.94068 -13.70380 -13.60259 -13.45002 -13.01713 -12.79091 -12.64010 -12.53087 -12.34695 -12.10130 -12.02899 -11.89007 -11.75507 -11.50443 -11.30173 -11.04362 -10.93205 -10.85532 -10.80923 -10.63832 -10.45399 -10.32601 -10.26583 -10.16307 -10.04795 -9.95113 -9.59610 -9.16746 -8.88150 -8.13171 -7.64403 -7.47689 -6.28687 -3.88429 1.98664 2.16311 2.28658 3.17156 3.20387 3.24928 4.04575 4.38759 4.62685 4.95789 5.13398 5.28468 5.31887 5.39603 5.42756 5.47582 5.70704 5.74210 5.80082 5.89225 5.98553 6.02904 6.06645 6.09147 6.09905 6.19511 6.22089 6.31991 6.34328 6.34766 6.39994 6.45577 6.58524 6.65718 6.73919 6.80908 6.81970 6.87371 7.08714 7.16864 7.24799 7.35079 7.38866 7.40341 7.47454 7.92932 8.18543 8.77103 9.19924 10.56558 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.006643 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.925852 B = 4213.980587 C = 4382.409943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.149 4.149 4 C 0.133 3.867 5 N -0.870 5.870 6 C -0.251 4.251 7 H 0.097 0.903 8 C -0.015 4.015 9 N -0.838 5.838 10 Si 0.926 3.074 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.275 1.275 14 S 2.689 3.311 15 O -0.927 6.927 16 O -1.036 7.036 17 C -0.560 4.560 18 C 0.005 3.995 19 C -0.171 4.171 20 C -0.153 4.153 21 C -0.081 4.081 22 C -0.107 4.107 23 C -0.153 4.153 24 C 0.004 3.996 25 C -0.164 4.164 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.286 0.714 36 H 0.058 0.942 37 H 0.129 0.871 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -0.366 -0.320 6.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.188 4.188 4 C 0.006 3.994 5 N -0.699 5.699 6 C -0.386 4.386 7 H 0.115 0.885 8 C -0.217 4.217 9 N -0.483 5.483 10 Si 0.753 3.247 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.200 1.200 14 S 2.783 3.217 15 O -0.915 6.915 16 O -1.025 7.025 17 C -0.644 4.644 18 C 0.003 3.997 19 C -0.227 4.227 20 C -0.172 4.172 21 C -0.082 4.082 22 C -0.164 4.164 23 C -0.171 4.171 24 C 0.002 3.998 25 C -0.220 4.220 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.118 0.882 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.589 -0.620 0.449 5.642 hybrid contribution -0.441 1.697 -1.087 2.063 sum -6.030 1.077 -0.638 6.159 Atomic orbital electron populations 1.21762 0.96379 1.00865 1.01795 1.21499 0.95481 0.97499 1.01688 1.22346 0.97434 0.96106 1.02931 1.21060 0.92987 0.83636 1.01683 1.53605 1.78707 1.16972 1.20615 1.18971 1.28133 1.03821 0.87632 0.88487 1.25356 0.96240 0.99817 1.00312 1.69793 1.28213 1.22477 1.27805 0.85910 0.78506 0.79623 0.80686 1.19724 1.20778 1.20042 1.03057 0.75116 0.72041 0.71535 1.93400 1.28750 1.84624 1.84774 1.93420 1.75182 1.74855 1.59080 1.30681 1.03889 1.26241 1.03624 1.19072 0.93932 0.92318 0.94409 1.21657 0.97446 1.04922 0.98662 1.20695 0.98357 0.96104 1.02018 1.19701 0.96275 0.94945 0.97240 1.20719 1.00381 0.93719 1.01601 1.20740 1.01626 0.93108 1.01660 1.19334 0.92550 0.94760 0.93123 1.22440 0.97202 0.98833 1.03493 0.92902 0.93346 0.92792 0.92201 0.92132 0.91148 0.90900 0.90674 0.92198 0.90066 0.92338 0.85284 0.92043 0.87393 0.91929 0.92202 0.92236 0.87405 0.87096 0.88234 0.94796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.15 0.37 -1.41 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.15 -2.45 3.94 -26.73 -0.11 -2.55 16 4 C 0.13 2.51 5.30 -4.04 -0.02 2.49 16 5 N -0.87 -19.53 1.68 -59.91 -0.10 -19.63 16 6 C -0.25 -5.67 5.59 -15.06 -0.08 -5.76 16 7 H 0.10 2.02 7.73 -52.48 -0.41 1.62 16 8 C -0.01 -0.35 3.35 -17.43 -0.06 -0.41 16 9 N -0.84 -21.46 6.05 55.49 0.34 -21.12 16 10 Si 0.93 19.75 28.98 -169.99 -4.93 14.83 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 14 S 2.69 66.56 3.78 -107.50 -0.41 66.15 16 15 O -0.93 -24.96 12.02 -57.17 -0.69 -25.65 16 16 O -1.04 -26.65 17.00 -57.17 -0.97 -27.62 16 17 C -0.56 -13.29 3.30 -39.59 -0.13 -13.42 16 18 C 0.00 0.10 5.22 -104.62 -0.55 -0.44 16 19 C -0.17 -3.57 9.41 36.00 0.34 -3.23 16 20 C -0.15 -3.07 9.33 -39.58 -0.37 -3.44 16 21 C -0.08 -1.55 5.88 -104.62 -0.62 -2.16 16 22 C -0.11 -1.57 10.01 36.00 0.36 -1.21 16 23 C -0.15 -3.09 9.39 -39.58 -0.37 -3.46 16 24 C 0.00 0.09 4.67 -104.62 -0.49 -0.40 16 25 C -0.16 -3.32 6.94 36.00 0.25 -3.07 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.28 7.29 -51.93 -0.38 0.90 16 32 H 0.07 1.16 7.21 -51.92 -0.37 0.78 16 33 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 34 H 0.06 1.12 7.62 -51.93 -0.40 0.72 16 35 H 0.29 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.13 3.03 4.77 -51.93 -0.25 2.78 16 38 H 0.06 1.10 8.04 -51.92 -0.42 0.69 16 39 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.78 8.09 -51.92 -0.42 0.36 16 42 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 43 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 44 H 0.11 2.26 4.68 -51.93 -0.24 2.02 16 45 H 0.10 2.03 1.25 -51.93 -0.06 1.97 16 46 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -28.72 351.39 -10.24 -38.96 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.15 Total: 9.06 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: -1.63 Total: -40.27 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.23 Total: -40.75 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -1.66 Total: -53.27 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.93 Total: 14.83 kcal Atomic # 16 Polarization: 66.56 SS G_CDS: -0.41 Total: 66.15 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.72 -10.24 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251485914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.708 kcal (2) G-P(sol) polarization free energy of solvation -28.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds