Wall clock time and date at job start Tue Mar 31 2020 15:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47069 * 2 1 4 4 C 1.52996 * 109.47241 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47387 * 179.97438 * 4 3 2 6 6 C 1.36938 * 119.99786 * 275.00035 * 5 4 3 7 7 H 1.08004 * 120.00344 * 12.83122 * 6 5 4 8 8 C 1.38814 * 119.99985 * 192.83285 * 6 5 4 9 9 N 1.31620 * 119.99918 * 10.80662 * 8 6 5 10 10 Si 1.86805 * 120.00152 * 190.81255 * 8 6 5 11 11 H 1.48500 * 109.47080 * 59.99820 * 10 8 6 12 12 H 1.48496 * 109.46952 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46956 * 300.00068 * 10 8 6 14 14 S 1.65603 * 120.00151 * 94.99426 * 5 4 3 15 15 O 1.42100 * 106.39758 * 109.10486 * 14 5 4 16 16 O 1.42095 * 106.40199 * 336.18542 * 14 5 4 17 17 C 1.76197 * 107.21800 * 222.63986 * 14 5 4 18 18 C 1.38228 * 120.00045 * 205.26781 * 17 14 5 19 19 C 1.50697 * 119.99993 * 0.09716 * 18 17 14 20 20 C 1.38244 * 120.00240 * 179.97438 * 18 17 14 21 21 C 1.38238 * 119.99618 * 0.09670 * 20 18 17 22 22 C 1.50699 * 119.99614 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99991 * 0.02562 * 21 20 18 24 24 C 1.38236 * 119.99857 * 25.40937 * 17 14 5 25 25 C 1.50698 * 120.00219 * 359.97438 * 24 17 14 26 26 H 1.09000 * 109.47544 * 60.00184 * 1 2 3 27 27 H 1.09007 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47505 * 299.99677 * 1 2 3 29 29 H 1.09004 * 109.47536 * 239.99998 * 2 1 3 30 30 H 1.09000 * 109.47544 * 119.99816 * 2 1 3 31 31 H 1.08991 * 109.47317 * 60.00188 * 3 2 1 32 32 H 1.09007 * 109.46952 * 299.99966 * 3 2 1 33 33 H 1.09004 * 109.47715 * 59.99783 * 4 3 2 34 34 H 1.09000 * 109.47193 * 299.99707 * 4 3 2 35 35 H 0.97000 * 120.00001 * 184.81189 * 9 8 6 36 36 H 1.09005 * 109.47128 * 276.56875 * 19 18 17 37 37 H 1.08992 * 109.47792 * 36.57144 * 19 18 17 38 38 H 1.09009 * 109.47355 * 156.57580 * 19 18 17 39 39 H 1.07994 * 119.99916 * 180.36940 * 20 18 17 40 40 H 1.08992 * 109.47073 * 90.00195 * 22 21 20 41 41 H 1.09008 * 109.46533 * 209.99859 * 22 21 20 42 42 H 1.08998 * 109.47223 * 329.99281 * 22 21 20 43 43 H 1.07997 * 119.99899 * 179.97438 * 23 21 20 44 44 H 1.09003 * 109.46726 * 262.43863 * 25 24 17 45 45 H 1.09001 * 109.47075 * 22.43684 * 25 24 17 46 46 H 1.08994 * 109.47415 * 142.44005 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.1885 3.5034 -1.1829 7 1 3.7439 3.1089 -2.0847 8 6 4.8921 4.6993 -1.2219 9 7 5.6103 5.0744 -0.1847 10 14 4.8194 5.7766 -2.7463 11 1 3.4130 6.1793 -3.0012 12 1 5.6505 6.9890 -2.5356 13 1 5.3364 5.0181 -3.9135 14 16 4.4526 3.5633 1.4270 15 8 5.8683 3.6853 1.4381 16 8 3.7226 2.8891 2.4428 17 6 3.8124 5.2034 1.3593 18 6 4.3917 6.2033 2.1178 19 6 5.5722 5.8911 3.0009 20 6 3.8898 7.4903 2.0643 21 6 2.8072 7.7768 1.2537 22 6 2.2597 9.1796 1.1958 23 6 2.2263 6.7763 0.4972 24 6 2.7289 5.4896 0.5499 25 6 2.0957 4.3989 -0.2750 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6765 1.9564 -0.8901 33 1 3.9330 0.9288 -0.8908 34 1 3.9336 0.9287 0.8891 35 1 6.0453 5.9414 -0.1839 36 1 5.2193 5.4864 3.9495 37 1 6.2108 5.1581 2.5083 38 1 6.1404 6.8033 3.1840 39 1 4.3462 8.2728 2.6523 40 1 2.7659 9.7349 0.4063 41 1 1.1904 9.1439 0.9869 42 1 2.4266 9.6746 2.1525 43 1 1.3803 7.0000 -0.1357 44 1 2.4853 4.4401 -1.2922 45 1 2.3290 3.4291 0.1645 46 1 1.0149 4.5387 -0.2940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251485914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:09 Heat of formation + Delta-G solvation = -17.280192 kcal Electronic energy + Delta-G solvation = -28628.406523 eV Core-core repulsion = 25032.578245 eV Total energy + Delta-G solvation = -3595.828278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.46618 -38.75131 -37.59352 -36.16522 -35.65657 -34.38030 -33.77329 -33.18249 -29.53399 -28.78913 -27.69491 -27.51290 -26.23113 -23.79894 -22.36503 -21.70136 -21.37597 -20.76668 -18.89126 -17.84457 -17.33978 -16.96489 -16.45448 -16.08684 -15.68360 -15.47735 -15.35845 -15.04957 -14.88013 -14.66562 -14.17428 -14.13922 -13.94615 -13.79820 -13.59902 -13.45296 -13.36112 -13.19899 -13.01020 -12.76254 -12.65308 -12.44194 -12.30115 -12.24521 -12.23443 -12.06030 -11.99860 -11.87712 -11.72175 -11.50612 -11.41360 -11.22170 -10.88469 -10.59186 -9.78061 -9.23384 -9.14774 -8.07765 -5.68658 0.32475 0.43438 0.68230 1.48771 1.51735 1.56587 2.32518 2.78050 2.88322 3.20028 3.34181 3.95951 4.05384 4.07734 4.12911 4.18269 4.32894 4.47251 4.48080 4.52919 4.62858 4.68972 4.71782 4.77826 4.80134 4.81789 4.88207 4.89589 4.99397 5.06050 5.09101 5.15527 5.21802 5.22757 5.29030 5.37459 5.41698 5.50403 5.56410 5.59763 5.62329 5.69739 5.76522 5.78408 5.87722 6.36866 6.37590 7.04174 7.40390 8.74545 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.006643 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.925852 B = 4213.980587 C = 4382.409943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.141 4.141 4 C 0.121 3.879 5 N -0.873 5.873 6 C -0.242 4.242 7 H 0.118 0.882 8 C -0.052 4.052 9 N -0.858 5.858 10 Si 0.967 3.033 11 H -0.257 1.257 12 H -0.301 1.301 13 H -0.266 1.266 14 S 2.680 3.320 15 O -0.961 6.961 16 O -1.063 7.063 17 C -0.585 4.585 18 C -0.018 4.018 19 C -0.171 4.171 20 C -0.163 4.163 21 C -0.078 4.078 22 C -0.104 4.104 23 C -0.165 4.165 24 C -0.012 4.012 25 C -0.166 4.166 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.275 0.725 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.132 0.868 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 0.608 -1.855 8.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.180 4.180 4 C -0.005 4.005 5 N -0.703 5.703 6 C -0.378 4.378 7 H 0.136 0.864 8 C -0.252 4.252 9 N -0.504 5.504 10 Si 0.793 3.207 11 H -0.182 1.182 12 H -0.227 1.227 13 H -0.191 1.191 14 S 2.777 3.223 15 O -0.950 6.950 16 O -1.052 7.052 17 C -0.671 4.671 18 C -0.020 4.020 19 C -0.227 4.227 20 C -0.181 4.181 21 C -0.078 4.078 22 C -0.161 4.161 23 C -0.184 4.184 24 C -0.014 4.014 25 C -0.222 4.222 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.150 0.850 44 H 0.128 0.872 45 H 0.113 0.887 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.588 0.298 -1.068 7.669 hybrid contribution 0.160 1.415 -0.601 1.546 sum -7.428 1.713 -1.669 7.804 Atomic orbital electron populations 1.21751 0.95020 1.02135 1.01743 1.21499 0.96662 0.95290 1.02489 1.22236 0.95459 0.98208 1.02098 1.21378 0.94782 0.82007 1.02296 1.53573 1.78974 1.17936 1.19769 1.19341 1.26953 1.03592 0.87955 0.86427 1.25976 0.96306 1.00979 1.01921 1.69948 1.29221 1.21906 1.29326 0.85257 0.78791 0.77829 0.78795 1.18206 1.22730 1.19082 1.03161 0.74664 0.72517 0.71908 1.93365 1.30753 1.85373 1.85466 1.93364 1.75285 1.75887 1.60642 1.30521 1.05456 1.25645 1.05517 1.19379 0.94436 0.93389 0.94813 1.21607 0.97235 1.05360 0.98514 1.21042 0.98818 0.95722 1.02538 1.20253 0.95173 0.97021 0.95375 1.20789 1.01372 0.90812 1.03116 1.21112 1.02398 0.92662 1.02224 1.19642 0.92387 0.96199 0.93187 1.22455 0.98488 0.98345 1.02924 0.92213 0.91440 0.93626 0.90379 0.92402 0.93508 0.90121 0.88509 0.93075 0.91313 0.91740 0.88054 0.89577 0.84859 0.90756 0.90383 0.90430 0.84975 0.87177 0.88687 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.91 71.98 0.71 -2.49 16 2 C -0.12 -3.02 5.93 30.59 0.18 -2.84 16 3 C -0.14 -4.52 3.94 30.59 0.12 -4.40 16 4 C 0.12 4.54 5.30 86.38 0.46 5.00 16 5 N -0.87 -39.46 1.68 -343.45 -0.58 -40.04 16 6 C -0.24 -10.80 5.59 84.03 0.47 -10.33 16 7 H 0.12 4.66 7.73 -2.91 -0.02 4.63 16 8 C -0.05 -2.45 3.35 84.86 0.28 -2.16 16 9 N -0.86 -44.86 6.05 21.65 0.13 -44.72 16 10 Si 0.97 39.45 28.98 68.60 1.99 41.44 16 11 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 12 H -0.30 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 14 S 2.68 137.28 3.78 -56.49 -0.21 137.07 16 15 O -0.96 -54.31 12.02 -128.00 -1.54 -55.85 16 16 O -1.06 -57.13 17.00 -128.00 -2.18 -59.31 16 17 C -0.58 -28.15 3.30 22.27 0.07 -28.07 16 18 C -0.02 -0.83 5.22 -19.87 -0.10 -0.93 16 19 C -0.17 -7.34 9.41 71.23 0.67 -6.67 16 20 C -0.16 -6.31 9.33 22.27 0.21 -6.10 16 21 C -0.08 -2.77 5.88 -19.87 -0.12 -2.89 16 22 C -0.10 -2.64 10.01 71.24 0.71 -1.93 16 23 C -0.17 -6.36 9.39 22.27 0.21 -6.15 16 24 C -0.01 -0.54 4.67 -19.87 -0.09 -0.64 16 25 C -0.17 -6.54 6.94 71.24 0.49 -6.05 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.72 7.29 -2.39 -0.02 1.70 16 32 H 0.08 2.43 7.21 -2.38 -0.02 2.41 16 33 H 0.10 3.15 8.08 -2.39 -0.02 3.13 16 34 H 0.05 1.97 7.62 -2.39 -0.02 1.95 16 35 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 37 H 0.10 5.02 4.77 -2.39 -0.01 5.01 16 38 H 0.09 3.12 8.04 -2.38 -0.02 3.10 16 39 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 41 H 0.08 1.71 8.09 -2.38 -0.02 1.69 16 42 H 0.08 1.69 8.09 -2.39 -0.02 1.68 16 43 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 44 H 0.11 4.30 4.68 -2.39 -0.01 4.29 16 45 H 0.10 3.85 1.25 -2.39 0.00 3.85 16 46 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 Total: -1.00 -63.59 351.39 2.87 -60.73 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.97 Total: 37.33 kcal Atomic # 6 Polarization: -80.93 SS G_CDS: 4.28 Total: -76.65 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -0.45 Total: -84.76 kcal Atomic # 8 Polarization: -111.44 SS G_CDS: -3.71 Total: -115.15 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.99 Total: 41.44 kcal Atomic # 16 Polarization: 137.28 SS G_CDS: -0.21 Total: 137.07 kcal Total: -63.59 2.87 -60.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251485914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.448 kcal (2) G-P(sol) polarization free energy of solvation -63.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds