Wall clock time and date at job start Tue Mar 31 2020 15:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 C 1.53010 * 109.47214 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47040 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00132 * 281.12439 * 5 4 3 7 7 C 1.50698 * 109.47108 * 274.72781 * 6 5 4 8 8 H 1.07996 * 119.99934 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99732 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99511 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00038 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47045 * 90.00209 * 11 9 7 13 13 H 1.48500 * 109.46724 * 210.00131 * 11 9 7 14 14 H 1.48495 * 109.47239 * 330.00203 * 11 9 7 15 15 S 1.65597 * 119.99720 * 100.85004 * 5 4 3 16 16 O 1.42096 * 106.40444 * 212.04568 * 15 5 4 17 17 O 1.42099 * 106.40342 * 344.96673 * 15 5 4 18 18 C 1.76204 * 107.21927 * 98.50433 * 15 5 4 19 19 C 1.38260 * 120.00095 * 115.13444 * 18 15 5 20 20 C 1.38213 * 120.00105 * 179.76729 * 19 18 15 21 21 C 1.50696 * 120.00135 * 180.23462 * 20 19 18 22 22 C 1.38256 * 119.99890 * 0.51301 * 20 19 18 23 23 C 1.38218 * 120.00042 * 359.74434 * 22 20 19 24 24 C 1.38218 * 119.99980 * 295.41462 * 18 15 5 25 25 C 1.50694 * 119.99885 * 359.97438 * 24 18 15 26 26 H 1.08998 * 109.46979 * 299.99909 * 1 2 3 27 27 H 1.09002 * 109.47069 * 60.00266 * 1 2 3 28 28 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47715 * 240.00140 * 2 1 3 30 30 H 1.09003 * 109.47576 * 119.99870 * 2 1 3 31 31 H 1.08998 * 109.47146 * 60.00194 * 3 2 1 32 32 H 1.08997 * 109.47377 * 299.99963 * 3 2 1 33 33 H 1.08999 * 109.46777 * 59.99590 * 4 3 2 34 34 H 1.08997 * 109.47082 * 300.00344 * 4 3 2 35 35 H 1.08997 * 109.46627 * 34.72590 * 6 5 4 36 36 H 1.09000 * 109.46920 * 154.72778 * 6 5 4 37 37 H 0.97002 * 119.99363 * 180.02562 * 10 9 7 38 38 H 1.07996 * 119.99877 * 0.02562 * 19 18 15 39 39 H 1.09001 * 109.46622 * 270.27766 * 21 20 19 40 40 H 1.08997 * 109.46943 * 30.27461 * 21 20 19 41 41 H 1.08996 * 109.47423 * 150.28062 * 21 20 19 42 42 H 1.07995 * 120.00197 * 179.72148 * 22 20 19 43 43 H 1.08003 * 120.00258 * 179.97438 * 23 22 20 44 44 H 1.09001 * 109.47259 * 83.34682 * 25 24 18 45 45 H 1.08997 * 109.47406 * 203.34590 * 25 24 18 46 46 H 1.09002 * 109.47264 * 323.35040 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.0722 3.5953 -1.2453 7 6 5.3426 3.3047 -2.0021 8 1 6.0673 2.6147 -1.5959 9 6 5.5800 3.9205 -3.2126 10 7 6.6885 3.6665 -3.8733 11 14 4.3268 5.1145 -3.9148 12 1 4.6305 6.4878 -3.4385 13 1 4.3877 5.0802 -5.3982 14 1 2.9660 4.7246 -3.4661 15 16 4.5882 3.5152 1.4084 16 8 4.2781 4.8989 1.3176 17 8 4.1257 2.6827 2.4630 18 6 6.3464 3.3989 1.4173 19 6 7.1154 4.5472 1.3760 20 6 8.4945 4.4562 1.3879 21 6 9.3326 5.7079 1.3483 22 6 9.1051 3.2165 1.4303 23 6 8.3363 2.0683 1.4662 24 6 6.9568 2.1596 1.4597 25 6 6.1186 0.9078 1.4989 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9289 0.8908 35 1 3.2136 3.3154 -1.8556 36 1 4.0223 4.6593 -1.0141 37 1 6.8557 4.1001 -4.7248 38 1 6.6384 5.5154 1.3387 39 1 9.5369 5.9756 0.3116 40 1 8.7939 6.5214 1.8342 41 1 10.2732 5.5321 1.8702 42 1 10.1826 3.1451 1.4350 43 1 8.8133 1.0999 1.4989 44 1 5.8202 0.6385 0.4857 45 1 6.6996 0.0950 1.9346 46 1 5.2298 1.0845 2.1046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254742077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:52 Heat of formation + Delta-G solvation = -64.520740 kcal Electronic energy + Delta-G solvation = -27220.367277 eV Core-core repulsion = 23622.490495 eV Total energy + Delta-G solvation = -3597.876781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.16785 -37.09226 -36.60604 -35.34393 -34.14986 -33.59872 -32.37877 -30.89450 -29.39579 -28.86808 -26.97751 -24.80115 -23.25093 -23.03447 -21.79632 -21.06801 -20.70309 -18.16812 -17.19688 -16.97996 -16.45699 -15.90784 -15.43559 -15.24657 -14.88091 -14.31914 -14.04173 -13.95610 -13.82385 -13.62235 -13.10065 -12.95877 -12.74482 -12.60478 -12.46467 -12.35236 -12.10109 -11.98313 -11.84142 -11.64978 -11.53883 -11.45050 -11.38455 -11.13092 -11.02767 -10.93496 -10.80126 -10.63066 -10.42909 -10.25568 -10.11420 -10.03509 -9.58396 -8.94049 -8.64466 -8.22698 -8.08937 -6.15105 -4.15293 0.95682 1.29190 1.65333 3.25157 3.31790 3.35229 3.48755 3.84911 4.26754 4.34730 4.77733 5.00516 5.02520 5.12055 5.14129 5.18108 5.21225 5.30117 5.36431 5.42150 5.46264 5.68275 5.76154 5.80835 5.81748 5.84260 5.88554 5.92564 5.97544 5.99899 6.13202 6.19725 6.22995 6.28367 6.30383 6.41311 6.46553 6.58846 6.60597 6.65025 6.73794 6.83381 7.09390 7.22784 7.35127 7.53313 8.41177 8.89987 9.45307 10.97426 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.006747 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.143892 B = 4149.301672 C = 5904.493632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.116 3.884 5 N -0.974 5.974 6 C 0.215 3.785 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.077 3.923 10 N -0.893 5.893 11 Si 0.866 3.134 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.262 1.262 15 S 2.693 3.307 16 O -0.966 6.966 17 O -0.974 6.974 18 C -0.654 4.654 19 C -0.009 4.009 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.066 4.066 23 C -0.141 4.141 24 C 0.021 3.979 25 C -0.176 4.176 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.264 0.736 38 H 0.137 0.863 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 -4.511 9.806 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.179 4.179 4 C -0.009 4.009 5 N -0.812 5.812 6 C 0.091 3.909 7 C -0.578 4.578 8 H 0.099 0.901 9 C -0.126 4.126 10 N -0.531 5.531 11 Si 0.692 3.308 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.187 1.187 15 S 2.784 3.216 16 O -0.957 6.957 17 O -0.965 6.965 18 C -0.740 4.740 19 C -0.028 4.028 20 C -0.116 4.116 21 C -0.168 4.168 22 C -0.084 4.084 23 C -0.160 4.160 24 C 0.019 3.981 25 C -0.232 4.232 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.155 0.845 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.606 -4.083 10.263 11.162 hybrid contribution 0.409 0.484 -1.097 1.267 sum -1.197 -3.600 9.166 9.920 Atomic orbital electron populations 1.21763 0.96168 1.01140 1.01779 1.21456 0.95622 0.96840 1.02099 1.22054 0.96394 0.96786 1.02629 1.21526 0.93380 0.82574 1.03457 1.57067 1.76439 1.22631 1.25067 1.19612 0.98693 0.91215 0.81339 1.21440 1.03704 1.27930 1.04732 0.90089 1.24831 0.95095 0.96133 0.96552 1.69901 1.24734 1.43219 1.15221 0.87004 0.82757 0.82420 0.78593 1.19768 1.21046 1.18685 1.01755 0.73820 0.73206 0.72778 1.93510 1.83269 1.32402 1.86499 1.93466 1.80175 1.68683 1.54145 1.30724 1.27153 0.98876 1.17272 1.20723 0.93327 0.97318 0.91480 1.19905 0.94000 0.95424 1.02270 1.20765 0.98669 0.94666 1.02718 1.21170 0.99529 0.92164 0.95577 1.21026 0.93221 0.98456 1.03299 1.19359 0.94412 0.92944 0.91364 1.21858 1.01611 0.95202 1.04523 0.92870 0.92807 0.93076 0.91742 0.91914 0.92014 0.91275 0.89872 0.89799 0.94104 0.94107 0.92587 0.84499 0.90821 0.91525 0.91821 0.85916 0.85720 0.88934 0.90511 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.45 5.93 -26.73 -0.16 -1.61 16 3 C -0.14 -2.05 5.46 -26.72 -0.15 -2.19 16 4 C 0.12 1.91 3.91 -4.04 -0.02 1.90 16 5 N -0.97 -19.29 2.73 -115.66 -0.32 -19.60 16 6 C 0.21 4.92 4.48 -5.19 -0.02 4.89 16 7 C -0.54 -14.21 9.94 -34.44 -0.34 -14.56 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 11 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 15 S 2.69 53.78 5.07 -107.50 -0.55 53.23 16 16 O -0.97 -21.52 15.72 -57.17 -0.90 -22.42 16 17 O -0.97 -18.98 14.32 -57.17 -0.82 -19.80 16 18 C -0.65 -12.68 5.91 -39.58 -0.23 -12.91 16 19 C -0.01 -0.17 9.21 -39.58 -0.36 -0.54 16 20 C -0.12 -1.91 5.88 -104.63 -0.62 -2.52 16 21 C -0.11 -1.46 10.01 36.00 0.36 -1.10 16 22 C -0.07 -1.02 9.70 -39.58 -0.38 -1.40 16 23 C -0.14 -2.24 9.68 -39.58 -0.38 -2.62 16 24 C 0.02 0.36 5.87 -104.63 -0.61 -0.25 16 25 C -0.18 -2.64 7.91 36.00 0.28 -2.35 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.05 7.65 -51.93 -0.40 0.66 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.08 1.24 4.33 -51.93 -0.22 1.02 16 35 H 0.04 0.91 6.65 -51.93 -0.35 0.56 16 36 H 0.04 0.97 6.47 -51.93 -0.34 0.64 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.14 2.50 7.33 -52.49 -0.38 2.11 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 41 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 42 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 44 H 0.09 1.39 6.55 -51.93 -0.34 1.05 16 45 H 0.08 0.92 8.04 -51.93 -0.42 0.51 16 46 H 0.10 1.60 4.05 -51.93 -0.21 1.39 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -31.73 374.13 -10.51 -42.25 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.31 Total: 4.57 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: -2.36 Total: -34.49 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.46 Total: -44.96 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -1.72 Total: -42.23 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 16 Polarization: 53.78 SS G_CDS: -0.55 Total: 53.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.73 -10.51 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254742077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.274 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds