Wall clock time and date at job start Tue Mar 31 2020 15:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 C 1.53010 * 109.47214 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47040 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00132 * 281.12439 * 5 4 3 7 7 C 1.50698 * 109.47108 * 274.72781 * 6 5 4 8 8 H 1.07996 * 119.99934 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99732 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99511 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00038 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47045 * 90.00209 * 11 9 7 13 13 H 1.48500 * 109.46724 * 210.00131 * 11 9 7 14 14 H 1.48495 * 109.47239 * 330.00203 * 11 9 7 15 15 S 1.65597 * 119.99720 * 100.85004 * 5 4 3 16 16 O 1.42096 * 106.40444 * 212.04568 * 15 5 4 17 17 O 1.42099 * 106.40342 * 344.96673 * 15 5 4 18 18 C 1.76204 * 107.21927 * 98.50433 * 15 5 4 19 19 C 1.38260 * 120.00095 * 115.13444 * 18 15 5 20 20 C 1.38213 * 120.00105 * 179.76729 * 19 18 15 21 21 C 1.50696 * 120.00135 * 180.23462 * 20 19 18 22 22 C 1.38256 * 119.99890 * 0.51301 * 20 19 18 23 23 C 1.38218 * 120.00042 * 359.74434 * 22 20 19 24 24 C 1.38218 * 119.99980 * 295.41462 * 18 15 5 25 25 C 1.50694 * 119.99885 * 359.97438 * 24 18 15 26 26 H 1.08998 * 109.46979 * 299.99909 * 1 2 3 27 27 H 1.09002 * 109.47069 * 60.00266 * 1 2 3 28 28 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47715 * 240.00140 * 2 1 3 30 30 H 1.09003 * 109.47576 * 119.99870 * 2 1 3 31 31 H 1.08998 * 109.47146 * 60.00194 * 3 2 1 32 32 H 1.08997 * 109.47377 * 299.99963 * 3 2 1 33 33 H 1.08999 * 109.46777 * 59.99590 * 4 3 2 34 34 H 1.08997 * 109.47082 * 300.00344 * 4 3 2 35 35 H 1.08997 * 109.46627 * 34.72590 * 6 5 4 36 36 H 1.09000 * 109.46920 * 154.72778 * 6 5 4 37 37 H 0.97002 * 119.99363 * 180.02562 * 10 9 7 38 38 H 1.07996 * 119.99877 * 0.02562 * 19 18 15 39 39 H 1.09001 * 109.46622 * 270.27766 * 21 20 19 40 40 H 1.08997 * 109.46943 * 30.27461 * 21 20 19 41 41 H 1.08996 * 109.47423 * 150.28062 * 21 20 19 42 42 H 1.07995 * 120.00197 * 179.72148 * 22 20 19 43 43 H 1.08003 * 120.00258 * 179.97438 * 23 22 20 44 44 H 1.09001 * 109.47259 * 83.34682 * 25 24 18 45 45 H 1.08997 * 109.47406 * 203.34590 * 25 24 18 46 46 H 1.09002 * 109.47264 * 323.35040 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.0722 3.5953 -1.2453 7 6 5.3426 3.3047 -2.0021 8 1 6.0673 2.6147 -1.5959 9 6 5.5800 3.9205 -3.2126 10 7 6.6885 3.6665 -3.8733 11 14 4.3268 5.1145 -3.9148 12 1 4.6305 6.4878 -3.4385 13 1 4.3877 5.0802 -5.3982 14 1 2.9660 4.7246 -3.4661 15 16 4.5882 3.5152 1.4084 16 8 4.2781 4.8989 1.3176 17 8 4.1257 2.6827 2.4630 18 6 6.3464 3.3989 1.4173 19 6 7.1154 4.5472 1.3760 20 6 8.4945 4.4562 1.3879 21 6 9.3326 5.7079 1.3483 22 6 9.1051 3.2165 1.4303 23 6 8.3363 2.0683 1.4662 24 6 6.9568 2.1596 1.4597 25 6 6.1186 0.9078 1.4989 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9289 0.8908 35 1 3.2136 3.3154 -1.8556 36 1 4.0223 4.6593 -1.0141 37 1 6.8557 4.1001 -4.7248 38 1 6.6384 5.5154 1.3387 39 1 9.5369 5.9756 0.3116 40 1 8.7939 6.5214 1.8342 41 1 10.2732 5.5321 1.8702 42 1 10.1826 3.1451 1.4350 43 1 8.8133 1.0999 1.4989 44 1 5.8202 0.6385 0.4857 45 1 6.6996 0.0950 1.9346 46 1 5.2298 1.0845 2.1046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254742077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:51 Heat of formation + Delta-G solvation = -83.120003 kcal Electronic energy + Delta-G solvation = -27221.173801 eV Core-core repulsion = 23622.490495 eV Total energy + Delta-G solvation = -3598.683306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43863 -38.60366 -38.14685 -36.97205 -35.48692 -34.87283 -34.25952 -32.20042 -30.83037 -30.10108 -28.56273 -25.98870 -24.76723 -24.32039 -23.39772 -22.34724 -21.85314 -19.72701 -19.00751 -18.70859 -17.95934 -17.43367 -16.71883 -16.60767 -16.22588 -15.98389 -15.51465 -15.24659 -15.15410 -14.81797 -14.54286 -14.24223 -14.23204 -13.97332 -13.79008 -13.67133 -13.52595 -13.35221 -13.16766 -13.07107 -13.06012 -12.96613 -12.69843 -12.62413 -12.47269 -12.23418 -12.14511 -11.92008 -11.83301 -11.75620 -11.61266 -11.47751 -11.27563 -10.76279 -10.26404 -9.74946 -9.48147 -8.27389 -6.30666 -0.56574 -0.07514 0.34659 1.35420 1.38755 1.45978 1.96161 2.34448 2.48220 2.76099 3.07215 3.33902 3.73953 3.83215 3.89323 3.95328 4.06300 4.21267 4.23290 4.30333 4.34141 4.50284 4.59181 4.62329 4.68527 4.72646 4.77732 4.79741 4.83828 4.90439 4.94660 4.97997 5.07332 5.07990 5.13634 5.17502 5.28201 5.29437 5.34531 5.38454 5.47666 5.48648 5.51661 5.54504 5.78026 5.98190 6.31965 6.74531 7.32749 8.87929 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.006747 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.143892 B = 4149.301672 C = 5904.493632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.139 4.139 4 C 0.109 3.891 5 N -0.977 5.977 6 C 0.222 3.778 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.024 3.976 10 N -0.937 5.937 11 Si 0.918 3.082 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.241 1.241 15 S 2.698 3.302 16 O -0.997 6.997 17 O -0.974 6.974 18 C -0.676 4.676 19 C -0.043 4.043 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.067 4.067 23 C -0.146 4.146 24 C 0.001 3.999 25 C -0.176 4.176 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.032 0.968 37 H 0.265 0.735 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 -5.635 10.349 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.178 4.178 4 C -0.016 4.016 5 N -0.814 5.814 6 C 0.098 3.902 7 C -0.569 4.569 8 H 0.070 0.930 9 C -0.175 4.175 10 N -0.577 5.577 11 Si 0.742 3.258 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.164 1.164 15 S 2.792 3.208 16 O -0.988 6.988 17 O -0.964 6.964 18 C -0.765 4.765 19 C -0.062 4.062 20 C -0.126 4.126 21 C -0.167 4.167 22 C -0.085 4.085 23 C -0.165 4.165 24 C 0.000 4.000 25 C -0.232 4.232 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.178 0.822 43 H 0.176 0.824 44 H 0.107 0.893 45 H 0.128 0.872 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.590 -5.223 10.827 12.126 hybrid contribution 0.506 0.766 -1.187 1.500 sum -1.084 -4.457 9.640 10.676 Atomic orbital electron populations 1.21760 0.95084 1.02244 1.01700 1.21457 0.96554 0.94809 1.02916 1.22059 0.94943 0.98784 1.02017 1.21804 0.94700 0.80909 1.04164 1.57004 1.76937 1.23742 1.23712 1.19358 0.97325 0.91194 0.82355 1.21594 1.04219 1.26512 1.04595 0.93000 1.25580 0.96838 0.97939 0.97142 1.70023 1.26785 1.44956 1.15903 0.86147 0.81569 0.80054 0.78041 1.19892 1.20540 1.16387 1.01407 0.74190 0.72482 0.72736 1.93460 1.84145 1.34233 1.86922 1.93455 1.80627 1.68352 1.53957 1.30607 1.26362 1.00158 1.19380 1.20913 0.94865 0.96990 0.93480 1.20356 0.93419 0.97535 1.01331 1.20836 0.99575 0.93408 1.02889 1.21692 1.01536 0.91450 0.93842 1.21525 0.92665 1.00324 1.01939 1.19783 0.95811 0.93046 0.91393 1.21900 1.01614 0.95239 1.04433 0.92857 0.93044 0.91390 0.91202 0.90852 0.92475 0.92060 0.90094 0.88150 0.92864 0.95024 0.92560 0.85448 0.91326 0.90899 0.88785 0.82177 0.82353 0.89279 0.87224 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.91 71.98 0.71 -2.19 16 2 C -0.12 -2.62 5.93 30.59 0.18 -2.44 16 3 C -0.14 -3.95 5.46 30.60 0.17 -3.78 16 4 C 0.11 3.52 3.91 86.38 0.34 3.86 16 5 N -0.98 -38.95 2.73 -519.85 -1.42 -40.36 16 6 C 0.22 10.23 4.48 85.63 0.38 10.62 16 7 C -0.53 -28.42 9.94 25.60 0.25 -28.16 16 8 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 9 C 0.02 1.34 5.47 84.65 0.46 1.80 16 10 N -0.94 -55.81 13.96 21.45 0.30 -55.51 16 11 Si 0.92 42.39 27.47 68.60 1.88 44.28 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 14 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 15 S 2.70 109.83 5.07 -56.49 -0.29 109.55 16 16 O -1.00 -45.92 15.72 -128.00 -2.01 -47.93 16 17 O -0.97 -38.03 14.32 -128.00 -1.83 -39.86 16 18 C -0.68 -26.69 5.91 22.27 0.13 -26.56 16 19 C -0.04 -1.67 9.21 22.27 0.20 -1.46 16 20 C -0.13 -4.08 5.88 -19.87 -0.12 -4.20 16 21 C -0.11 -2.76 10.01 71.23 0.71 -2.04 16 22 C -0.07 -1.93 9.70 22.27 0.22 -1.72 16 23 C -0.15 -4.34 9.68 22.27 0.22 -4.13 16 24 C 0.00 0.04 5.87 -19.87 -0.12 -0.08 16 25 C -0.18 -5.05 7.91 71.23 0.56 -4.49 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.82 7.65 -2.39 -0.02 1.80 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.10 2.89 4.33 -2.39 -0.01 2.88 16 35 H 0.05 2.32 6.65 -2.39 -0.02 2.30 16 36 H 0.03 1.53 6.47 -2.39 -0.02 1.51 16 37 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.13 4.96 7.33 -2.91 -0.02 4.94 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 41 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 42 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 43 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 44 H 0.09 2.61 6.55 -2.39 -0.02 2.59 16 45 H 0.11 2.34 8.04 -2.39 -0.02 2.32 16 46 H 0.10 2.91 4.05 -2.39 -0.01 2.90 16 Total: -1.00 -69.50 374.13 1.85 -67.65 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.90 Total: 27.17 kcal Atomic # 6 Polarization: -69.29 SS G_CDS: 4.31 Total: -64.98 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -1.12 Total: -95.87 kcal Atomic # 8 Polarization: -83.95 SS G_CDS: -3.85 Total: -87.79 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.28 kcal Atomic # 16 Polarization: 109.83 SS G_CDS: -0.29 Total: 109.55 kcal Total: -69.50 1.85 -67.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254742077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.471 kcal (2) G-P(sol) polarization free energy of solvation -69.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds