Wall clock time and date at job start Tue Mar 31 2020 15:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47051 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.50704 * 109.46882 * 84.99554 * 6 5 4 8 8 H 1.07992 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00317 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99593 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47347 * 59.99966 * 11 9 7 13 13 H 1.48498 * 109.47065 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47381 * 299.99760 * 11 9 7 15 15 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 16 16 O 1.42095 * 106.40469 * 203.54076 * 15 5 4 17 17 O 1.42098 * 106.40441 * 336.46418 * 15 5 4 18 18 C 1.76207 * 107.21624 * 90.00391 * 15 5 4 19 19 C 1.38238 * 119.99673 * 269.72920 * 18 15 5 20 20 C 1.38231 * 119.99694 * 179.76874 * 19 18 15 21 21 C 1.38237 * 119.99866 * 0.48111 * 20 19 18 22 22 C 1.50704 * 119.99743 * 179.76932 * 21 20 19 23 23 C 1.52996 * 109.47307 * 270.01885 * 22 21 20 24 24 C 1.38228 * 120.00298 * 359.79109 * 21 20 19 25 25 C 1.38224 * 119.99967 * 90.00006 * 18 15 5 26 26 H 1.08997 * 109.46986 * 59.99779 * 1 2 3 27 27 H 1.09002 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46918 * 299.99255 * 1 2 3 29 29 H 1.08999 * 109.46918 * 240.00745 * 2 1 3 30 30 H 1.08999 * 109.47653 * 119.99898 * 2 1 3 31 31 H 1.09003 * 109.46645 * 60.00113 * 3 2 1 32 32 H 1.09002 * 109.47370 * 300.00379 * 3 2 1 33 33 H 1.08999 * 109.46886 * 60.00687 * 4 3 2 34 34 H 1.08999 * 109.47559 * 299.99918 * 4 3 2 35 35 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 36 36 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 37 37 H 0.97005 * 120.00079 * 179.97438 * 10 9 7 38 38 H 1.07998 * 120.00071 * 359.97438 * 19 18 15 39 39 H 1.08004 * 119.99946 * 180.24755 * 20 19 18 40 40 H 1.08999 * 109.47427 * 30.02335 * 22 21 20 41 41 H 1.09005 * 109.46830 * 150.01853 * 22 21 20 42 42 H 1.08997 * 109.47075 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47245 * 300.00562 * 23 22 21 44 44 H 1.08998 * 109.46847 * 60.00079 * 23 22 21 45 45 H 1.07999 * 120.00508 * 179.97438 * 24 21 20 46 46 H 1.08006 * 120.00306 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.1987 3.5506 1.2642 7 6 5.5355 3.2303 1.8819 8 1 6.2129 2.5536 1.3824 9 6 5.8937 3.8014 3.0847 10 7 5.0690 4.6259 3.6926 11 14 7.5510 3.4050 3.8499 12 1 8.6354 3.8139 2.9215 13 1 7.6928 4.1405 5.1321 14 1 7.6421 1.9448 4.1048 15 16 4.4579 3.5615 -1.4278 16 8 5.3727 4.5987 -1.1014 17 8 4.7590 2.5204 -2.3468 18 6 3.0036 4.3525 -2.0312 19 6 2.1421 3.6691 -2.8689 20 6 0.9987 4.2881 -3.3384 21 6 0.7220 5.5937 -2.9782 22 6 -0.5219 6.2701 -3.4943 23 6 -0.2095 6.9711 -4.8178 24 6 1.5863 6.2789 -2.1450 25 6 2.7271 5.6581 -1.6713 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8935 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9565 -0.8900 33 1 3.9329 0.9290 -0.8909 34 1 3.9338 0.9287 0.8891 35 1 4.1325 4.6222 1.0767 36 1 3.4025 3.2511 1.9458 37 1 5.3209 5.0274 4.5390 38 1 2.3606 2.6506 -3.1538 39 1 0.3235 3.7528 -3.9897 40 1 -1.3016 5.5251 -3.6528 41 1 -0.8646 7.0052 -2.7659 42 1 -1.1091 7.4607 -5.1908 43 1 0.5701 7.7161 -4.6593 44 1 0.1331 6.2361 -5.5461 45 1 1.3703 7.2990 -1.8639 46 1 3.4022 6.1934 -1.0200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255049986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:54 Heat of formation + Delta-G solvation = -74.854449 kcal Electronic energy + Delta-G solvation = -26404.759979 eV Core-core repulsion = 22806.435094 eV Total energy + Delta-G solvation = -3598.324885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.36841 -36.78926 -36.46197 -35.16718 -34.35979 -34.04656 -32.33894 -30.97892 -29.64127 -28.84476 -26.49115 -24.35409 -23.38243 -22.79335 -22.08970 -21.22080 -20.76721 -18.52104 -17.48589 -16.72606 -16.31824 -15.91297 -15.55490 -15.25753 -14.93829 -14.42368 -14.38443 -13.90101 -13.85397 -13.71445 -13.53681 -13.33686 -12.88786 -12.78631 -12.51626 -12.31890 -12.15862 -11.84434 -11.51571 -11.49353 -11.45152 -11.36664 -11.31351 -11.13444 -10.97759 -10.94310 -10.82257 -10.68120 -10.50208 -10.29586 -10.25245 -9.94680 -9.71664 -9.04202 -8.94952 -8.42389 -8.03832 -6.04802 -4.08609 0.82471 1.14030 1.38308 3.35320 3.38763 3.41222 3.44590 3.81785 4.37562 4.47143 4.54341 4.61815 4.82067 4.95999 5.05841 5.09436 5.14881 5.16890 5.29659 5.30495 5.31068 5.38520 5.52046 5.52396 5.61783 5.74543 5.79517 5.85933 5.88914 5.91522 5.94585 5.98597 6.02536 6.19872 6.21975 6.26206 6.32000 6.34638 6.46934 6.64974 6.68669 6.92136 7.24550 7.40674 7.61411 7.92536 8.21575 8.93419 9.56363 11.03692 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.004420 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.994150 B = 6333.024101 C = 7415.298516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.121 3.879 5 N -0.980 5.980 6 C 0.257 3.743 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.063 3.937 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.276 1.276 15 S 2.683 3.317 16 O -0.943 6.943 17 O -0.978 6.978 18 C -0.675 4.675 19 C -0.020 4.020 20 C -0.144 4.144 21 C -0.038 4.038 22 C -0.091 4.091 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.012 4.012 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.128 0.872 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.420 -1.205 -12.543 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.182 4.182 4 C -0.006 4.006 5 N -0.819 5.819 6 C 0.136 3.864 7 C -0.568 4.568 8 H 0.079 0.921 9 C -0.139 4.139 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.202 1.202 15 S 2.772 3.228 16 O -0.933 6.933 17 O -0.968 6.968 18 C -0.760 4.760 19 C -0.039 4.039 20 C -0.163 4.163 21 C -0.038 4.038 22 C -0.128 4.128 23 C -0.204 4.204 24 C -0.160 4.160 25 C -0.031 4.031 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.146 0.854 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.638 -1.059 -12.769 17.997 hybrid contribution 0.073 0.141 0.598 0.619 sum -12.566 -0.918 -12.171 17.518 Atomic orbital electron populations 1.21758 0.96229 1.01081 1.01690 1.21462 0.95508 0.96936 1.02159 1.22139 0.96914 0.96653 1.02533 1.21270 0.92529 0.82950 1.03813 1.57401 1.81029 1.21227 1.22223 1.19079 0.97482 0.91219 0.78666 1.21454 1.02020 1.27811 1.05509 0.92113 1.24911 0.97317 0.94811 0.96850 1.69909 1.36142 1.30262 1.17185 0.86591 0.84276 0.78420 0.78376 1.19959 1.21220 1.20183 1.02246 0.74168 0.73604 0.72821 1.93598 1.58701 1.57754 1.83284 1.93486 1.83220 1.56614 1.63472 1.31465 1.24492 1.06909 1.13088 1.20868 0.91896 0.99130 0.91976 1.21074 0.98167 0.94995 1.02089 1.20158 0.95468 0.93923 0.94238 1.20650 0.94563 0.99781 0.97802 1.21743 1.01771 1.00585 0.96335 1.21146 0.95145 1.00360 0.99332 1.21024 0.95423 0.92364 0.94270 0.93060 0.93113 0.92770 0.92024 0.91659 0.91082 0.92535 0.90359 0.89402 0.94427 0.94472 0.92665 0.84625 0.85610 0.90728 0.90616 0.92227 0.92340 0.92432 0.85379 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.12 -1.46 5.93 -26.73 -0.16 -1.62 16 3 C -0.14 -2.07 5.54 -26.73 -0.15 -2.22 16 4 C 0.12 2.09 5.68 -4.04 -0.02 2.06 16 5 N -0.98 -20.20 2.77 -115.66 -0.32 -20.52 16 6 C 0.26 6.33 5.10 -5.19 -0.03 6.31 16 7 C -0.53 -14.64 9.38 -34.44 -0.32 -14.97 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 11 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 S 2.68 54.43 5.65 -107.50 -0.61 53.82 16 16 O -0.94 -22.57 16.25 -57.17 -0.93 -23.49 16 17 O -0.98 -20.26 15.83 -57.17 -0.90 -21.16 16 18 C -0.68 -11.38 5.97 -39.59 -0.24 -11.62 16 19 C -0.02 -0.28 8.47 -39.58 -0.34 -0.62 16 20 C -0.14 -1.75 9.70 -39.58 -0.38 -2.14 16 21 C -0.04 -0.44 5.13 -104.62 -0.54 -0.98 16 22 C -0.09 -0.78 6.06 -27.88 -0.17 -0.94 16 23 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 24 C -0.14 -1.86 9.70 -39.58 -0.38 -2.24 16 25 C -0.01 -0.19 9.52 -39.58 -0.38 -0.56 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.78 7.06 -51.93 -0.37 0.42 16 33 H 0.08 1.27 6.91 -51.93 -0.36 0.91 16 34 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 35 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 36 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.14 1.79 7.61 -52.49 -0.40 1.39 16 39 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.14 2.34 7.62 -52.48 -0.40 1.94 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -32.45 390.82 -11.42 -43.87 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.80 Total: -0.14 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: -2.46 Total: -29.84 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.42 Total: -45.63 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -1.83 Total: -44.66 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 54.43 SS G_CDS: -0.61 Total: 53.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.45 -11.42 -43.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255049986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.982 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds