Wall clock time and date at job start Tue Mar 31 2020 15:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47051 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.50704 * 109.46882 * 84.99554 * 6 5 4 8 8 H 1.07992 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00317 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99593 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47347 * 59.99966 * 11 9 7 13 13 H 1.48498 * 109.47065 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47381 * 299.99760 * 11 9 7 15 15 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 16 16 O 1.42095 * 106.40469 * 203.54076 * 15 5 4 17 17 O 1.42098 * 106.40441 * 336.46418 * 15 5 4 18 18 C 1.76207 * 107.21624 * 90.00391 * 15 5 4 19 19 C 1.38238 * 119.99673 * 269.72920 * 18 15 5 20 20 C 1.38231 * 119.99694 * 179.76874 * 19 18 15 21 21 C 1.38237 * 119.99866 * 0.48111 * 20 19 18 22 22 C 1.50704 * 119.99743 * 179.76932 * 21 20 19 23 23 C 1.52996 * 109.47307 * 270.01885 * 22 21 20 24 24 C 1.38228 * 120.00298 * 359.79109 * 21 20 19 25 25 C 1.38224 * 119.99967 * 90.00006 * 18 15 5 26 26 H 1.08997 * 109.46986 * 59.99779 * 1 2 3 27 27 H 1.09002 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46918 * 299.99255 * 1 2 3 29 29 H 1.08999 * 109.46918 * 240.00745 * 2 1 3 30 30 H 1.08999 * 109.47653 * 119.99898 * 2 1 3 31 31 H 1.09003 * 109.46645 * 60.00113 * 3 2 1 32 32 H 1.09002 * 109.47370 * 300.00379 * 3 2 1 33 33 H 1.08999 * 109.46886 * 60.00687 * 4 3 2 34 34 H 1.08999 * 109.47559 * 299.99918 * 4 3 2 35 35 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 36 36 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 37 37 H 0.97005 * 120.00079 * 179.97438 * 10 9 7 38 38 H 1.07998 * 120.00071 * 359.97438 * 19 18 15 39 39 H 1.08004 * 119.99946 * 180.24755 * 20 19 18 40 40 H 1.08999 * 109.47427 * 30.02335 * 22 21 20 41 41 H 1.09005 * 109.46830 * 150.01853 * 22 21 20 42 42 H 1.08997 * 109.47075 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47245 * 300.00562 * 23 22 21 44 44 H 1.08998 * 109.46847 * 60.00079 * 23 22 21 45 45 H 1.07999 * 120.00508 * 179.97438 * 24 21 20 46 46 H 1.08006 * 120.00306 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.1987 3.5506 1.2642 7 6 5.5355 3.2303 1.8819 8 1 6.2129 2.5536 1.3824 9 6 5.8937 3.8014 3.0847 10 7 5.0690 4.6259 3.6926 11 14 7.5510 3.4050 3.8499 12 1 8.6354 3.8139 2.9215 13 1 7.6928 4.1405 5.1321 14 1 7.6421 1.9448 4.1048 15 16 4.4579 3.5615 -1.4278 16 8 5.3727 4.5987 -1.1014 17 8 4.7590 2.5204 -2.3468 18 6 3.0036 4.3525 -2.0312 19 6 2.1421 3.6691 -2.8689 20 6 0.9987 4.2881 -3.3384 21 6 0.7220 5.5937 -2.9782 22 6 -0.5219 6.2701 -3.4943 23 6 -0.2095 6.9711 -4.8178 24 6 1.5863 6.2789 -2.1450 25 6 2.7271 5.6581 -1.6713 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8935 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9565 -0.8900 33 1 3.9329 0.9290 -0.8909 34 1 3.9338 0.9287 0.8891 35 1 4.1325 4.6222 1.0767 36 1 3.4025 3.2511 1.9458 37 1 5.3209 5.0274 4.5390 38 1 2.3606 2.6506 -3.1538 39 1 0.3235 3.7528 -3.9897 40 1 -1.3016 5.5251 -3.6528 41 1 -0.8646 7.0052 -2.7659 42 1 -1.1091 7.4607 -5.1908 43 1 0.5701 7.7161 -4.6593 44 1 0.1331 6.2361 -5.5461 45 1 1.3703 7.2990 -1.8639 46 1 3.4022 6.1934 -1.0200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255049986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:54 Heat of formation + Delta-G solvation = -93.561367 kcal Electronic energy + Delta-G solvation = -26405.571172 eV Core-core repulsion = 22806.435094 eV Total energy + Delta-G solvation = -3599.136078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.42117 -38.38244 -38.05549 -36.87920 -35.51794 -35.20843 -34.23679 -32.06746 -30.57049 -30.31643 -28.25443 -25.23848 -25.03512 -23.88237 -23.64442 -22.15982 -21.88703 -19.99366 -19.07804 -18.37488 -18.29282 -17.35193 -16.64390 -16.57745 -16.24028 -16.01727 -15.53676 -15.27429 -14.97980 -14.70979 -14.63753 -14.34970 -14.29400 -14.15619 -13.77531 -13.65346 -13.51946 -13.15436 -13.08699 -13.03549 -12.90669 -12.84907 -12.54241 -12.38432 -12.36806 -12.27593 -12.19764 -11.85417 -11.82808 -11.75365 -11.63335 -11.57213 -11.34305 -10.58818 -10.12952 -10.04359 -9.74835 -8.19719 -6.31515 -0.57589 -0.18829 0.29815 1.39232 1.42905 1.49917 2.03720 2.41378 2.52644 2.84924 3.11133 3.32102 3.72264 3.75339 3.90673 3.92844 4.07012 4.23110 4.24677 4.32950 4.33733 4.47188 4.48614 4.59671 4.65825 4.72828 4.81514 4.83308 4.91381 4.99069 5.06286 5.07600 5.07913 5.11471 5.16506 5.18868 5.21018 5.34314 5.37618 5.38589 5.50678 5.52633 5.55147 5.70865 5.87475 5.92492 6.10623 6.75942 7.36916 8.87720 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.004420 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.994150 B = 6333.024101 C = 7415.298516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.135 4.135 4 C 0.114 3.886 5 N -0.987 5.987 6 C 0.275 3.725 7 C -0.550 4.550 8 H 0.053 0.947 9 C 0.014 3.986 10 N -0.923 5.923 11 Si 0.955 3.045 12 H -0.278 1.278 13 H -0.276 1.276 14 H -0.263 1.263 15 S 2.686 3.314 16 O -0.993 6.993 17 O -0.988 6.988 18 C -0.684 4.684 19 C -0.027 4.027 20 C -0.137 4.137 21 C -0.027 4.027 22 C -0.089 4.089 23 C -0.147 4.147 24 C -0.143 4.143 25 C -0.037 4.037 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.015 0.985 36 H 0.029 0.971 37 H 0.267 0.733 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.151 0.849 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.903 -1.819 -14.091 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.174 4.174 4 C -0.012 4.012 5 N -0.824 5.824 6 C 0.152 3.848 7 C -0.589 4.589 8 H 0.071 0.929 9 C -0.185 4.185 10 N -0.563 5.563 11 Si 0.779 3.221 12 H -0.203 1.203 13 H -0.201 1.201 14 H -0.188 1.188 15 S 2.781 3.219 16 O -0.983 6.983 17 O -0.978 6.978 18 C -0.774 4.774 19 C -0.046 4.046 20 C -0.155 4.155 21 C -0.027 4.027 22 C -0.126 4.126 23 C -0.204 4.204 24 C -0.161 4.161 25 C -0.057 4.057 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.165 0.835 39 H 0.182 0.818 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.168 0.832 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.081 -1.725 -14.300 20.855 hybrid contribution 0.726 0.386 0.961 1.265 sum -14.355 -1.339 -13.339 19.642 Atomic orbital electron populations 1.21738 0.94748 1.02218 1.01793 1.21468 0.96761 0.94860 1.02759 1.22060 0.94514 0.98653 1.02194 1.21505 0.94681 0.81175 1.03799 1.57256 1.81700 1.22517 1.20971 1.18594 0.95935 0.90322 0.79993 1.21801 1.03209 1.27857 1.06050 0.92907 1.25716 1.00805 0.94653 0.97344 1.70003 1.37765 1.30937 1.17585 0.85663 0.79761 0.78976 0.77665 1.20308 1.20068 1.18794 1.01651 0.74860 0.72943 0.72485 1.93528 1.61795 1.59035 1.83990 1.93453 1.84158 1.57002 1.63233 1.30718 1.23781 1.07381 1.15520 1.21108 0.92292 0.99703 0.91523 1.21506 0.97396 0.95172 1.01442 1.20641 0.95948 0.93792 0.92344 1.20758 0.93110 1.00433 0.98271 1.21752 1.02469 1.00411 0.95776 1.21425 0.94092 1.01453 0.99155 1.21030 0.96809 0.92471 0.95351 0.92289 0.91471 0.93364 0.90750 0.91814 0.92645 0.91629 0.89291 0.90415 0.96668 0.95315 0.92370 0.83527 0.81794 0.88668 0.89571 0.90343 0.93176 0.92486 0.83167 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.91 71.98 0.71 -2.05 16 2 C -0.12 -2.69 5.93 30.60 0.18 -2.51 16 3 C -0.13 -3.88 5.54 30.59 0.17 -3.71 16 4 C 0.11 4.02 5.68 86.38 0.49 4.51 16 5 N -0.99 -42.64 2.77 -519.85 -1.44 -44.08 16 6 C 0.27 14.32 5.10 85.63 0.44 14.76 16 7 C -0.55 -31.74 9.38 25.60 0.24 -31.50 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 9 C 0.01 0.83 5.46 84.66 0.46 1.29 16 10 N -0.92 -54.69 13.29 21.45 0.28 -54.41 16 11 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 15 S 2.69 114.17 5.65 -56.49 -0.32 113.86 16 16 O -0.99 -50.84 16.25 -128.00 -2.08 -52.92 16 17 O -0.99 -41.91 15.83 -128.00 -2.03 -43.93 16 18 C -0.68 -23.44 5.97 22.27 0.13 -23.31 16 19 C -0.03 -0.73 8.47 22.27 0.19 -0.54 16 20 C -0.14 -2.84 9.70 22.27 0.22 -2.63 16 21 C -0.03 -0.55 5.13 -19.87 -0.10 -0.65 16 22 C -0.09 -1.14 6.06 29.85 0.18 -0.95 16 23 C -0.15 -1.71 9.89 71.98 0.71 -1.00 16 24 C -0.14 -3.58 9.70 22.27 0.22 -3.36 16 25 C -0.04 -1.23 9.52 22.27 0.21 -1.01 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.75 7.06 -2.39 -0.02 1.73 16 33 H 0.09 2.93 6.91 -2.39 -0.02 2.91 16 34 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 35 H 0.02 0.86 7.61 -2.39 -0.02 0.84 16 36 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 37 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 38 H 0.15 3.60 7.61 -2.91 -0.02 3.57 16 39 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.09 0.90 8.09 -2.39 -0.02 0.89 16 41 H 0.09 0.98 8.09 -2.38 -0.02 0.96 16 42 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 46 H 0.12 4.40 7.62 -2.91 -0.02 4.38 16 Total: -1.00 -72.74 390.82 1.83 -70.91 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.93 Total: 16.04 kcal Atomic # 6 Polarization: -57.12 SS G_CDS: 4.45 Total: -52.66 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -1.15 Total: -98.49 kcal Atomic # 8 Polarization: -92.75 SS G_CDS: -4.11 Total: -96.86 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 114.17 SS G_CDS: -0.32 Total: 113.86 kcal Total: -72.74 1.83 -70.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255049986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.655 kcal (2) G-P(sol) polarization free energy of solvation -72.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds