Wall clock time and date at job start Tue Mar 31 2020 15:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47133 * 2 1 4 4 C 1.53000 * 109.47133 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46796 * 179.97438 * 4 3 2 6 6 C 1.36943 * 120.00122 * 274.99884 * 5 4 3 7 7 H 1.07995 * 119.99953 * 146.61113 * 6 5 4 8 8 C 1.38811 * 119.99991 * 326.61141 * 6 5 4 9 9 N 1.31624 * 119.99801 * 336.02341 * 8 6 5 10 10 Si 1.86795 * 120.00191 * 156.01873 * 8 6 5 11 11 H 1.48498 * 109.46865 * 60.00225 * 10 8 6 12 12 H 1.48500 * 109.47551 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47193 * 300.00437 * 10 8 6 14 14 S 1.65599 * 120.00155 * 95.00231 * 5 4 3 15 15 O 1.42108 * 106.40124 * 341.68570 * 14 5 4 16 16 O 1.42095 * 106.40277 * 208.76236 * 14 5 4 17 17 C 1.76205 * 107.21829 * 95.22015 * 14 5 4 18 18 C 1.38233 * 119.99743 * 90.00342 * 17 14 5 19 19 C 1.38233 * 119.99946 * 179.97438 * 18 17 14 20 20 C 1.38234 * 119.99978 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99874 * 179.97438 * 20 19 18 22 22 C 1.53009 * 109.47031 * 90.00298 * 21 20 19 23 23 C 1.52996 * 109.47388 * 179.97438 * 22 21 20 24 24 C 1.38231 * 119.99889 * 0.25737 * 20 19 18 25 25 C 1.38235 * 120.00291 * 359.48970 * 24 20 19 26 26 H 1.09000 * 109.47033 * 299.99773 * 1 2 3 27 27 H 1.08995 * 109.47391 * 60.00347 * 1 2 3 28 28 H 1.09007 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47063 * 239.99688 * 2 1 3 30 30 H 1.09001 * 109.47145 * 120.00324 * 2 1 3 31 31 H 1.09000 * 109.46975 * 60.00192 * 3 2 1 32 32 H 1.09004 * 109.46911 * 299.99983 * 3 2 1 33 33 H 1.09000 * 109.47033 * 60.00227 * 4 3 2 34 34 H 1.08992 * 109.47328 * 300.00177 * 4 3 2 35 35 H 0.97003 * 119.99611 * 179.97438 * 9 8 6 36 36 H 1.08005 * 119.99979 * 359.97438 * 18 17 14 37 37 H 1.08007 * 120.00097 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47287 * 210.00196 * 21 20 19 39 39 H 1.08995 * 109.47984 * 330.00582 * 21 20 19 40 40 H 1.09001 * 109.47002 * 300.00073 * 22 21 20 41 41 H 1.09000 * 109.47147 * 60.00007 * 22 21 20 42 42 H 1.08994 * 109.47591 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47184 * 300.00054 * 23 22 21 44 44 H 1.09005 * 109.47338 * 59.99840 * 23 22 21 45 45 H 1.08001 * 119.99634 * 179.72379 * 24 20 19 46 46 H 1.07992 * 120.00294 * 180.25453 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.1895 3.5030 -1.1818 7 1 4.0152 4.5683 -1.2145 8 6 4.5467 2.8224 -2.3376 9 7 5.2028 1.6843 -2.2550 10 14 4.0962 3.5214 -4.0102 11 1 4.7225 4.8580 -4.1730 12 1 4.5883 2.6118 -5.0759 13 1 2.6203 3.6507 -4.1115 14 16 4.4515 3.5636 1.4284 15 8 3.8238 2.8100 2.4568 16 8 4.2268 4.9533 1.2356 17 6 6.1876 3.3673 1.6568 18 6 7.0616 4.3169 1.1616 19 6 8.4236 4.1632 1.3412 20 6 8.9116 3.0596 2.0156 21 6 10.3964 2.8917 2.2109 22 6 10.8170 3.5594 3.5218 23 6 12.3244 3.3885 3.7205 24 6 8.0379 2.1070 2.5057 25 6 6.6756 2.2633 2.3307 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 5.4521 1.2085 -3.0627 36 1 6.6803 5.1789 0.6343 37 1 9.1065 4.9049 0.9539 38 1 10.6401 1.8300 2.2493 39 1 10.9271 3.3564 1.3800 40 1 10.5733 4.6211 3.4833 41 1 10.2864 3.0947 4.3528 42 1 12.6240 3.8637 4.6545 43 1 12.5677 2.3267 3.7591 44 1 12.8554 3.8529 2.8895 45 1 8.4195 1.2426 3.0287 46 1 5.9929 1.5212 2.7172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255192448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:14 Heat of formation + Delta-G solvation = -78.164774 kcal Electronic energy + Delta-G solvation = -26189.236114 eV Core-core repulsion = 22590.767683 eV Total energy + Delta-G solvation = -3598.468431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.86168 -36.48503 -35.79770 -35.01160 -34.39145 -33.87904 -31.56029 -30.86943 -30.43934 -28.17964 -26.38773 -24.81585 -22.40962 -22.23785 -22.17210 -20.67276 -20.38994 -18.49024 -17.53992 -16.59695 -16.22565 -15.53077 -15.10799 -14.85112 -14.70117 -14.50111 -13.99790 -13.97948 -13.60022 -13.41794 -13.24542 -12.94001 -12.73509 -12.44391 -12.25451 -12.05830 -12.01859 -11.64284 -11.50159 -11.37849 -11.23165 -11.01047 -10.89769 -10.89157 -10.76803 -10.71778 -10.64771 -10.47641 -10.43003 -10.30399 -10.07647 -9.75121 -9.61112 -9.23094 -8.46705 -8.43042 -7.85853 -6.59736 -4.14578 1.46778 1.88352 1.90776 3.09807 3.13995 3.20294 3.93540 4.06459 4.51521 4.72514 4.82133 4.88748 5.04372 5.09300 5.22019 5.41093 5.45441 5.46868 5.50949 5.52880 5.67405 5.70593 5.76017 5.76402 5.88499 5.93587 6.02590 6.05843 6.19775 6.21493 6.26091 6.32252 6.35787 6.36895 6.42922 6.55532 6.68418 6.74780 6.80613 6.88643 6.93038 6.94529 7.19708 7.28186 7.48007 7.57569 8.26360 8.67365 9.15034 10.34475 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.004122 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.423411 B = 6791.457666 C = 7722.112564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.130 4.130 4 C 0.123 3.877 5 N -0.801 5.801 6 C -0.247 4.247 7 H 0.109 0.891 8 C 0.039 3.961 9 N -0.821 5.821 10 Si 0.921 3.079 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.267 1.267 14 S 2.536 3.464 15 O -1.005 7.005 16 O -0.987 6.987 17 C -0.650 4.650 18 C -0.018 4.018 19 C -0.145 4.145 20 C -0.056 4.056 21 C -0.081 4.081 22 C -0.119 4.119 23 C -0.151 4.151 24 C -0.146 4.146 25 C -0.029 4.029 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.275 0.725 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.117 0.883 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.756 -2.257 3.292 7.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.169 4.169 4 C -0.004 4.004 5 N -0.624 5.624 6 C -0.395 4.395 7 H 0.127 0.873 8 C -0.175 4.175 9 N -0.459 5.459 10 Si 0.746 3.254 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.192 1.192 14 S 2.638 3.362 15 O -0.995 6.995 16 O -0.977 6.977 17 C -0.729 4.729 18 C -0.037 4.037 19 C -0.164 4.164 20 C -0.057 4.057 21 C -0.119 4.119 22 C -0.157 4.157 23 C -0.209 4.209 24 C -0.164 4.164 25 C -0.048 4.048 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.135 0.865 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.378 -1.954 4.078 7.027 hybrid contribution 0.811 -0.021 -0.896 1.208 sum 6.189 -1.975 3.183 7.234 Atomic orbital electron populations 1.21763 0.96593 1.00676 1.01635 1.21438 0.95090 0.97686 1.01620 1.21955 0.97297 0.95613 1.02082 1.21394 0.92015 0.83249 1.03713 1.53701 1.65968 1.22833 1.19880 1.19758 1.40701 0.95528 0.83520 0.87326 1.25744 0.94224 0.96562 1.00943 1.69985 1.29995 1.15348 1.30605 0.86062 0.79755 0.79258 0.80287 1.19197 1.20669 1.19223 1.10795 0.74792 0.74987 0.75660 1.93333 1.75221 1.71849 1.59115 1.93349 1.85031 1.33086 1.86250 1.32202 1.31221 1.01730 1.07714 1.20843 0.92651 0.96736 0.93505 1.21053 0.95699 0.98170 1.01428 1.19926 0.95071 0.94448 0.96215 1.20662 0.91775 1.01379 0.98056 1.21512 0.95868 1.01119 0.97203 1.21785 0.96031 1.01641 1.01420 1.21005 0.93550 0.99323 1.02558 1.20790 0.95298 0.95197 0.93487 0.92970 0.92943 0.93460 0.92162 0.92356 0.92612 0.91508 0.87426 0.92878 0.91424 0.85081 0.86402 0.91104 0.91066 0.91811 0.91852 0.92807 0.92767 0.92742 0.86477 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.92 5.93 -26.73 -0.16 -2.08 16 3 C -0.13 -2.52 5.51 -26.73 -0.15 -2.67 16 4 C 0.12 2.68 4.97 -4.04 -0.02 2.66 16 5 N -0.80 -19.05 2.85 -59.91 -0.17 -19.22 16 6 C -0.25 -6.02 9.17 -15.06 -0.14 -6.16 16 7 H 0.11 2.66 7.45 -52.49 -0.39 2.27 16 8 C 0.04 0.90 4.97 -17.43 -0.09 0.82 16 9 N -0.82 -19.54 11.28 55.49 0.63 -18.91 16 10 Si 0.92 18.23 29.62 -169.99 -5.03 13.20 16 11 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 12 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 13 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 14 S 2.54 61.01 5.61 -107.50 -0.60 60.40 16 15 O -1.01 -25.12 16.08 -57.17 -0.92 -26.04 16 16 O -0.99 -25.77 16.28 -57.17 -0.93 -26.70 16 17 C -0.65 -14.34 5.97 -39.58 -0.24 -14.58 16 18 C -0.02 -0.38 9.52 -39.59 -0.38 -0.76 16 19 C -0.14 -2.55 9.70 -39.58 -0.38 -2.94 16 20 C -0.06 -0.92 5.13 -104.63 -0.54 -1.45 16 21 C -0.08 -1.01 5.35 -27.88 -0.15 -1.15 16 22 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 23 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 24 C -0.15 -2.52 9.70 -39.59 -0.38 -2.90 16 25 C -0.03 -0.58 9.52 -39.58 -0.38 -0.95 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.11 2.44 5.31 -51.93 -0.28 2.17 16 34 H 0.05 1.13 7.46 -51.93 -0.39 0.74 16 35 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 36 H 0.13 2.67 7.62 -52.48 -0.40 2.27 16 37 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 46 H 0.13 2.43 7.62 -52.49 -0.40 2.03 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -28.59 388.00 -11.35 -39.94 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.75 Total: 7.75 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: -2.42 Total: -36.26 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.46 Total: -38.13 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -1.85 Total: -52.74 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 16 Polarization: 61.01 SS G_CDS: -0.60 Total: 60.40 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.59 -11.35 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255192448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.227 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds