Wall clock time and date at job start Tue Mar 31 2020 15:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47133 * 2 1 4 4 C 1.53000 * 109.47133 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46796 * 179.97438 * 4 3 2 6 6 C 1.36943 * 120.00122 * 274.99884 * 5 4 3 7 7 H 1.07995 * 119.99953 * 146.61113 * 6 5 4 8 8 C 1.38811 * 119.99991 * 326.61141 * 6 5 4 9 9 N 1.31624 * 119.99801 * 336.02341 * 8 6 5 10 10 Si 1.86795 * 120.00191 * 156.01873 * 8 6 5 11 11 H 1.48498 * 109.46865 * 60.00225 * 10 8 6 12 12 H 1.48500 * 109.47551 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47193 * 300.00437 * 10 8 6 14 14 S 1.65599 * 120.00155 * 95.00231 * 5 4 3 15 15 O 1.42108 * 106.40124 * 341.68570 * 14 5 4 16 16 O 1.42095 * 106.40277 * 208.76236 * 14 5 4 17 17 C 1.76205 * 107.21829 * 95.22015 * 14 5 4 18 18 C 1.38233 * 119.99743 * 90.00342 * 17 14 5 19 19 C 1.38233 * 119.99946 * 179.97438 * 18 17 14 20 20 C 1.38234 * 119.99978 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99874 * 179.97438 * 20 19 18 22 22 C 1.53009 * 109.47031 * 90.00298 * 21 20 19 23 23 C 1.52996 * 109.47388 * 179.97438 * 22 21 20 24 24 C 1.38231 * 119.99889 * 0.25737 * 20 19 18 25 25 C 1.38235 * 120.00291 * 359.48970 * 24 20 19 26 26 H 1.09000 * 109.47033 * 299.99773 * 1 2 3 27 27 H 1.08995 * 109.47391 * 60.00347 * 1 2 3 28 28 H 1.09007 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47063 * 239.99688 * 2 1 3 30 30 H 1.09001 * 109.47145 * 120.00324 * 2 1 3 31 31 H 1.09000 * 109.46975 * 60.00192 * 3 2 1 32 32 H 1.09004 * 109.46911 * 299.99983 * 3 2 1 33 33 H 1.09000 * 109.47033 * 60.00227 * 4 3 2 34 34 H 1.08992 * 109.47328 * 300.00177 * 4 3 2 35 35 H 0.97003 * 119.99611 * 179.97438 * 9 8 6 36 36 H 1.08005 * 119.99979 * 359.97438 * 18 17 14 37 37 H 1.08007 * 120.00097 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47287 * 210.00196 * 21 20 19 39 39 H 1.08995 * 109.47984 * 330.00582 * 21 20 19 40 40 H 1.09001 * 109.47002 * 300.00073 * 22 21 20 41 41 H 1.09000 * 109.47147 * 60.00007 * 22 21 20 42 42 H 1.08994 * 109.47591 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47184 * 300.00054 * 23 22 21 44 44 H 1.09005 * 109.47338 * 59.99840 * 23 22 21 45 45 H 1.08001 * 119.99634 * 179.72379 * 24 20 19 46 46 H 1.07992 * 120.00294 * 180.25453 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.1895 3.5030 -1.1818 7 1 4.0152 4.5683 -1.2145 8 6 4.5467 2.8224 -2.3376 9 7 5.2028 1.6843 -2.2550 10 14 4.0962 3.5214 -4.0102 11 1 4.7225 4.8580 -4.1730 12 1 4.5883 2.6118 -5.0759 13 1 2.6203 3.6507 -4.1115 14 16 4.4515 3.5636 1.4284 15 8 3.8238 2.8100 2.4568 16 8 4.2268 4.9533 1.2356 17 6 6.1876 3.3673 1.6568 18 6 7.0616 4.3169 1.1616 19 6 8.4236 4.1632 1.3412 20 6 8.9116 3.0596 2.0156 21 6 10.3964 2.8917 2.2109 22 6 10.8170 3.5594 3.5218 23 6 12.3244 3.3885 3.7205 24 6 8.0379 2.1070 2.5057 25 6 6.6756 2.2633 2.3307 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 5.4521 1.2085 -3.0627 36 1 6.6803 5.1789 0.6343 37 1 9.1065 4.9049 0.9539 38 1 10.6401 1.8300 2.2493 39 1 10.9271 3.3564 1.3800 40 1 10.5733 4.6211 3.4833 41 1 10.2864 3.0947 4.3528 42 1 12.6240 3.8637 4.6545 43 1 12.5677 2.3267 3.7591 44 1 12.8554 3.8529 2.8895 45 1 8.4195 1.2426 3.0287 46 1 5.9929 1.5212 2.7172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255192448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:13 Heat of formation + Delta-G solvation = -92.422489 kcal Electronic energy + Delta-G solvation = -26189.854375 eV Core-core repulsion = 22590.767683 eV Total energy + Delta-G solvation = -3599.086692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.26548 -38.21266 -37.75870 -36.38757 -36.03183 -35.37803 -33.32787 -32.07657 -31.91682 -29.71333 -27.48084 -26.56002 -23.94710 -23.69320 -23.33113 -21.86627 -21.80654 -20.31192 -19.25809 -18.40498 -18.06215 -16.91299 -16.59764 -16.42438 -16.15878 -15.93417 -15.41339 -15.35336 -15.03560 -14.77717 -14.56300 -14.38446 -14.05023 -13.89882 -13.77602 -13.35126 -13.16626 -13.13292 -13.02331 -12.94075 -12.71908 -12.65322 -12.55984 -12.23177 -12.15241 -12.10364 -12.08776 -11.91900 -11.82524 -11.64134 -11.52645 -11.35685 -11.29910 -10.98128 -9.93258 -9.92123 -9.64341 -8.38987 -6.02443 -0.12018 0.12715 0.41684 1.49984 1.54172 1.62640 2.27505 2.51568 2.76074 2.91984 3.25324 3.69266 3.75068 3.91413 4.03067 4.15119 4.18166 4.21116 4.21510 4.37186 4.40055 4.50049 4.54672 4.56829 4.74496 4.79566 4.88584 4.92030 4.93780 4.99949 5.00208 5.05912 5.07570 5.18779 5.23784 5.24404 5.29802 5.32627 5.36570 5.44131 5.44676 5.45688 5.57506 5.62691 5.80619 6.03233 6.41898 6.82788 7.31395 8.55988 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.004122 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.423411 B = 6791.457666 C = 7722.112564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.126 4.126 4 C 0.122 3.878 5 N -0.809 5.809 6 C -0.272 4.272 7 H 0.097 0.903 8 C 0.014 3.986 9 N -0.840 5.840 10 Si 0.979 3.021 11 H -0.266 1.266 12 H -0.271 1.271 13 H -0.264 1.264 14 S 2.538 3.462 15 O -1.024 7.024 16 O -1.018 7.018 17 C -0.677 4.677 18 C -0.043 4.043 19 C -0.146 4.146 20 C -0.046 4.046 21 C -0.078 4.078 22 C -0.118 4.118 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.048 4.048 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.282 0.718 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.152 0.848 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.639 -3.372 2.768 8.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.166 4.166 4 C -0.004 4.004 5 N -0.632 5.632 6 C -0.420 4.420 7 H 0.114 0.886 8 C -0.199 4.199 9 N -0.478 5.478 10 Si 0.801 3.199 11 H -0.191 1.191 12 H -0.196 1.196 13 H -0.189 1.189 14 S 2.644 3.356 15 O -1.014 7.014 16 O -1.008 7.008 17 C -0.760 4.760 18 C -0.062 4.062 19 C -0.164 4.164 20 C -0.046 4.046 21 C -0.115 4.115 22 C -0.156 4.156 23 C -0.205 4.205 24 C -0.162 4.162 25 C -0.067 4.067 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.166 0.834 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.169 0.831 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.225 -3.077 3.558 8.621 hybrid contribution 0.372 0.314 -0.656 0.816 sum 7.597 -2.764 2.903 8.589 Atomic orbital electron populations 1.21739 0.94575 1.02295 1.01725 1.21428 0.96853 0.95051 1.02148 1.21927 0.95671 0.97998 1.00984 1.21491 0.93487 0.82333 1.03133 1.53688 1.66652 1.23395 1.19433 1.19823 1.42362 0.95440 0.84346 0.88587 1.26395 0.93441 0.96652 1.03370 1.70031 1.30031 1.15975 1.31751 0.85199 0.79528 0.78700 0.76449 1.19103 1.19570 1.18861 1.10414 0.75458 0.74187 0.75568 1.93284 1.76298 1.71931 1.59863 1.93288 1.86034 1.34825 1.86674 1.31796 1.29935 1.03711 1.10529 1.20942 0.94270 0.96517 0.94474 1.21410 0.94667 0.99344 1.01001 1.20449 0.97425 0.92962 0.93806 1.20762 0.88545 1.02864 0.99340 1.21496 0.97423 1.00509 0.96129 1.21752 0.94245 1.02373 1.02115 1.21411 0.92331 1.00566 1.01930 1.20962 0.97025 0.94772 0.93958 0.93117 0.92691 0.91054 0.91531 0.91925 0.94044 0.92180 0.88092 0.93096 0.90782 0.86183 0.83434 0.89460 0.89692 0.92407 0.92249 0.92080 0.91996 0.92103 0.83071 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.12 -3.66 5.93 30.59 0.18 -3.48 16 3 C -0.13 -5.03 5.51 30.59 0.17 -4.86 16 4 C 0.12 5.50 4.97 86.38 0.43 5.93 16 5 N -0.81 -40.15 2.85 -343.46 -0.98 -41.13 16 6 C -0.27 -13.73 9.17 84.03 0.77 -12.96 16 7 H 0.10 4.96 7.45 -2.91 -0.02 4.94 16 8 C 0.01 0.63 4.97 84.86 0.42 1.05 16 9 N -0.84 -40.10 11.28 21.65 0.24 -39.86 16 10 Si 0.98 37.11 29.62 68.60 2.03 39.14 16 11 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 12 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 13 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 14 S 2.54 128.57 5.61 -56.49 -0.32 128.25 16 15 O -1.02 -53.63 16.08 -128.00 -2.06 -55.69 16 16 O -1.02 -56.28 16.28 -128.00 -2.08 -58.36 16 17 C -0.68 -30.94 5.97 22.27 0.13 -30.80 16 18 C -0.04 -1.81 9.52 22.27 0.21 -1.60 16 19 C -0.15 -4.97 9.70 22.27 0.22 -4.76 16 20 C -0.05 -1.40 5.13 -19.87 -0.10 -1.50 16 21 C -0.08 -1.64 5.35 29.85 0.16 -1.48 16 22 C -0.12 -2.21 5.92 30.60 0.18 -2.03 16 23 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 24 C -0.14 -4.73 9.70 22.27 0.22 -4.52 16 25 C -0.05 -1.95 9.52 22.27 0.21 -1.74 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 33 H 0.10 4.69 5.31 -2.39 -0.01 4.68 16 34 H 0.05 2.25 7.46 -2.39 -0.02 2.24 16 35 H 0.28 12.44 8.31 -92.71 -0.77 11.67 16 36 H 0.12 5.19 7.62 -2.91 -0.02 5.17 16 37 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 38 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 39 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 45 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 46 H 0.13 4.97 7.62 -2.91 -0.02 4.95 16 Total: -1.00 -63.32 388.00 2.40 -60.92 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.93 Total: 33.93 kcal Atomic # 6 Polarization: -71.84 SS G_CDS: 4.63 Total: -67.21 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -0.73 Total: -80.99 kcal Atomic # 8 Polarization: -109.91 SS G_CDS: -4.14 Total: -114.05 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 16 Polarization: 128.57 SS G_CDS: -0.32 Total: 128.25 kcal Total: -63.32 2.40 -60.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255192448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.500 kcal (2) G-P(sol) polarization free energy of solvation -63.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds