Wall clock time and date at job start Tue Mar 31 2020 15:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47247 * 2 1 4 4 C 1.53007 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46871 * 180.02562 * 4 3 2 6 6 C 1.36935 * 120.00081 * 274.99967 * 5 4 3 7 7 H 1.08000 * 120.00223 * 146.60492 * 6 5 4 8 8 C 1.38818 * 119.99888 * 326.60483 * 6 5 4 9 9 N 1.31617 * 119.99601 * 336.03495 * 8 6 5 10 10 Si 1.86800 * 119.99793 * 156.02956 * 8 6 5 11 11 H 1.48504 * 109.46701 * 60.00655 * 10 8 6 12 12 H 1.48498 * 109.46801 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47577 * 300.00696 * 10 8 6 14 14 S 1.65604 * 120.00316 * 94.99968 * 5 4 3 15 15 O 1.42102 * 106.40072 * 341.68566 * 14 5 4 16 16 O 1.42095 * 106.40457 * 208.76100 * 14 5 4 17 17 C 1.76207 * 107.21777 * 95.22153 * 14 5 4 18 18 C 1.38233 * 119.99791 * 90.00047 * 17 14 5 19 19 C 1.38231 * 119.99920 * 179.97438 * 18 17 14 20 20 C 1.38238 * 119.99938 * 0.02562 * 19 18 17 21 21 C 1.50701 * 120.00186 * 179.97438 * 20 19 18 22 22 C 1.52993 * 109.47322 * 240.00586 * 21 20 19 23 23 C 1.53001 * 109.47230 * 120.00353 * 21 20 19 24 24 C 1.38235 * 120.00098 * 0.25795 * 20 19 18 25 25 C 1.38234 * 119.99864 * 359.46837 * 24 20 19 26 26 H 1.09005 * 109.46893 * 59.99590 * 1 2 3 27 27 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46933 * 299.99526 * 1 2 3 29 29 H 1.09007 * 109.47081 * 240.00115 * 2 1 3 30 30 H 1.08995 * 109.47160 * 120.00836 * 2 1 3 31 31 H 1.09003 * 109.47017 * 60.00563 * 3 2 1 32 32 H 1.08998 * 109.47263 * 300.00293 * 3 2 1 33 33 H 1.08995 * 109.46978 * 60.00540 * 4 3 2 34 34 H 1.09005 * 109.47001 * 300.00382 * 4 3 2 35 35 H 0.97009 * 119.98995 * 179.97438 * 9 8 6 36 36 H 1.07999 * 120.00245 * 359.97438 * 18 17 14 37 37 H 1.07994 * 120.00230 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47136 * 0.02562 * 21 20 19 39 39 H 1.09002 * 109.47489 * 299.99732 * 22 21 20 40 40 H 1.09004 * 109.47337 * 59.99835 * 22 21 20 41 41 H 1.09008 * 109.47334 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47192 * 59.99962 * 23 21 20 43 43 H 1.08998 * 109.47216 * 180.02562 * 23 21 20 44 44 H 1.09005 * 109.46969 * 300.00482 * 23 21 20 45 45 H 1.07999 * 119.99988 * 179.72076 * 24 20 19 46 46 H 1.08004 * 120.00373 * 180.29634 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.1897 3.5039 -1.1799 7 1 4.0152 4.5693 -1.2117 8 6 4.5470 2.8243 -2.3363 9 7 5.2028 1.6861 -2.2546 10 14 4.0967 3.5250 -4.0083 11 1 4.7232 4.8617 -4.1698 12 1 4.5878 2.6156 -5.0746 13 1 2.6209 3.6546 -4.1097 14 16 4.4516 3.5623 1.4303 15 8 3.8239 2.8078 2.4580 16 8 4.2270 4.9522 1.2387 17 6 6.1878 3.3657 1.6586 18 6 7.0618 4.3157 1.1641 19 6 8.4237 4.1618 1.3436 20 6 8.9117 3.0576 2.0172 21 6 10.3965 2.8895 2.2124 22 6 10.8536 1.5874 1.5518 23 6 10.7118 2.8402 3.7088 24 6 8.0380 2.1046 2.5065 25 6 6.6757 2.2614 2.3320 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9286 0.8909 35 1 5.4522 1.2110 -3.0628 36 1 6.6806 5.1781 0.6376 37 1 9.1065 4.9041 0.9577 38 1 10.9202 3.7308 1.7586 39 1 10.3299 0.7462 2.0059 40 1 10.6290 1.6225 0.4857 41 1 11.9277 1.4660 1.6926 42 1 10.1881 1.9991 4.1630 43 1 11.7858 2.7191 3.8500 44 1 10.3861 3.7679 4.1794 45 1 8.4195 1.2397 3.0288 46 1 5.9928 1.5193 2.7184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255310189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:17 Heat of formation + Delta-G solvation = -74.936037 kcal Electronic energy + Delta-G solvation = -26500.960940 eV Core-core repulsion = 22902.632518 eV Total energy + Delta-G solvation = -3598.328423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.05648 -36.48486 -35.79823 -35.16334 -34.39060 -33.87924 -31.56047 -30.47597 -29.44327 -28.17547 -27.14939 -24.81940 -23.30463 -22.40072 -22.13846 -20.39445 -19.89180 -18.48566 -17.55732 -16.62949 -16.24678 -15.53425 -14.93536 -14.84206 -14.68170 -14.28086 -14.06026 -13.69308 -13.49104 -13.46323 -13.23177 -12.87525 -12.68575 -12.47105 -12.32240 -12.25186 -11.91886 -11.64323 -11.50139 -11.37450 -11.15891 -11.12998 -10.89688 -10.82695 -10.77251 -10.70591 -10.64860 -10.43188 -10.41480 -10.30373 -10.07732 -9.74812 -9.60423 -9.22997 -8.47372 -8.41787 -7.85904 -6.59752 -4.14503 1.47728 1.88583 1.91388 3.09764 3.13899 3.20229 3.93990 4.07457 4.51427 4.72005 4.77024 4.87092 5.08963 5.21300 5.30860 5.42304 5.50315 5.50882 5.52785 5.59201 5.66744 5.67405 5.80395 5.84954 5.88865 5.98439 6.04457 6.08936 6.23526 6.25887 6.28283 6.32432 6.35030 6.36293 6.42886 6.55797 6.68384 6.75980 6.80576 6.88813 6.93780 6.95389 7.19702 7.28152 7.48207 7.57477 8.26391 8.67407 9.15126 10.34458 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004578 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.644708 B = 6115.158476 C = 6934.859367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.130 4.130 4 C 0.123 3.877 5 N -0.801 5.801 6 C -0.247 4.247 7 H 0.109 0.891 8 C 0.039 3.961 9 N -0.821 5.821 10 Si 0.921 3.079 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.267 1.267 14 S 2.537 3.463 15 O -1.006 7.006 16 O -0.987 6.987 17 C -0.649 4.649 18 C -0.018 4.018 19 C -0.145 4.145 20 C -0.050 4.050 21 C -0.059 4.059 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.029 4.029 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.275 0.725 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.117 0.883 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 -2.938 2.857 6.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.170 4.170 4 C -0.004 4.004 5 N -0.624 5.624 6 C -0.395 4.395 7 H 0.127 0.873 8 C -0.175 4.175 9 N -0.459 5.459 10 Si 0.746 3.254 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.192 1.192 14 S 2.638 3.362 15 O -0.995 6.995 16 O -0.977 6.977 17 C -0.729 4.729 18 C -0.037 4.037 19 C -0.164 4.164 20 C -0.051 4.051 21 C -0.077 4.077 22 C -0.200 4.200 23 C -0.200 4.200 24 C -0.161 4.161 25 C -0.048 4.048 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.135 0.865 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.015 -2.638 3.644 6.737 hybrid contribution 0.808 0.008 -0.901 1.210 sum 5.823 -2.630 2.742 6.953 Atomic orbital electron populations 1.21763 0.96595 1.00676 1.01636 1.21437 0.95089 0.97682 1.01617 1.21957 0.97302 0.95616 1.02082 1.21394 0.92010 0.83247 1.03703 1.53698 1.65983 1.22816 1.19896 1.19753 1.40689 0.95506 0.83532 0.87339 1.25746 0.94233 0.96567 1.00940 1.69987 1.30011 1.15368 1.30566 0.86065 0.79759 0.79263 0.80294 1.19192 1.20672 1.19226 1.10782 0.74799 0.74976 0.75660 1.93331 1.75227 1.71815 1.59154 1.93349 1.85043 1.33077 1.86265 1.32194 1.31189 1.01733 1.07740 1.20835 0.92629 0.96741 0.93517 1.21082 0.95716 0.98191 1.01415 1.19901 0.94680 0.94356 0.96139 1.20162 0.91971 0.99014 0.96573 1.21846 1.00453 0.96667 1.01084 1.21849 1.00962 1.02219 0.94980 1.20933 0.93405 0.99242 1.02543 1.20787 0.95289 0.95212 0.93539 0.92949 0.93458 0.92964 0.92166 0.92358 0.92612 0.91508 0.87430 0.92889 0.91434 0.85092 0.86413 0.90613 0.92375 0.92308 0.92646 0.92394 0.92585 0.92596 0.86499 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.92 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.53 5.51 -26.73 -0.15 -2.68 16 4 C 0.12 2.69 4.97 -4.04 -0.02 2.67 16 5 N -0.80 -19.06 2.85 -59.91 -0.17 -19.23 16 6 C -0.25 -6.01 9.17 -15.06 -0.14 -6.15 16 7 H 0.11 2.66 7.45 -52.49 -0.39 2.27 16 8 C 0.04 0.90 4.98 -17.43 -0.09 0.81 16 9 N -0.82 -19.53 11.28 55.49 0.63 -18.91 16 10 Si 0.92 18.24 29.62 -169.99 -5.03 13.21 16 11 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 12 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 13 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 14 S 2.54 61.04 5.61 -107.50 -0.60 60.44 16 15 O -1.01 -25.14 16.08 -57.17 -0.92 -26.06 16 16 O -0.99 -25.80 16.28 -57.17 -0.93 -26.73 16 17 C -0.65 -14.32 5.97 -39.58 -0.24 -14.56 16 18 C -0.02 -0.38 9.52 -39.59 -0.38 -0.75 16 19 C -0.15 -2.57 9.67 -39.58 -0.38 -2.95 16 20 C -0.05 -0.82 4.78 -104.62 -0.50 -1.32 16 21 C -0.06 -0.74 3.09 -91.77 -0.28 -1.02 16 22 C -0.14 -1.66 9.00 37.15 0.33 -1.32 16 23 C -0.14 -1.55 9.01 37.16 0.33 -1.22 16 24 C -0.14 -2.45 8.71 -39.58 -0.34 -2.80 16 25 C -0.03 -0.59 9.52 -39.58 -0.38 -0.96 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.11 2.44 5.31 -51.93 -0.28 2.17 16 34 H 0.05 1.12 7.46 -51.93 -0.39 0.74 16 35 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 36 H 0.13 2.67 7.62 -52.49 -0.40 2.27 16 37 H 0.12 1.74 7.95 -52.49 -0.42 1.33 16 38 H 0.08 0.88 7.88 -51.93 -0.41 0.47 16 39 H 0.06 0.67 7.37 -51.93 -0.38 0.29 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 42 H 0.06 0.63 7.41 -51.93 -0.38 0.24 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.12 1.68 7.10 -52.49 -0.37 1.31 16 46 H 0.13 2.43 7.62 -52.48 -0.40 2.03 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -28.58 383.84 -10.87 -39.45 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.61 Total: 8.06 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: -2.02 Total: -36.01 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.46 Total: -38.13 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -1.85 Total: -52.79 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: 61.04 SS G_CDS: -0.60 Total: 60.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.58 -10.87 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255310189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.488 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds