Wall clock time and date at job start Tue Mar 31 2020 15:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47247 * 2 1 4 4 C 1.53007 * 109.47094 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46871 * 180.02562 * 4 3 2 6 6 C 1.36935 * 120.00081 * 274.99967 * 5 4 3 7 7 H 1.08000 * 120.00223 * 146.60492 * 6 5 4 8 8 C 1.38818 * 119.99888 * 326.60483 * 6 5 4 9 9 N 1.31617 * 119.99601 * 336.03495 * 8 6 5 10 10 Si 1.86800 * 119.99793 * 156.02956 * 8 6 5 11 11 H 1.48504 * 109.46701 * 60.00655 * 10 8 6 12 12 H 1.48498 * 109.46801 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47577 * 300.00696 * 10 8 6 14 14 S 1.65604 * 120.00316 * 94.99968 * 5 4 3 15 15 O 1.42102 * 106.40072 * 341.68566 * 14 5 4 16 16 O 1.42095 * 106.40457 * 208.76100 * 14 5 4 17 17 C 1.76207 * 107.21777 * 95.22153 * 14 5 4 18 18 C 1.38233 * 119.99791 * 90.00047 * 17 14 5 19 19 C 1.38231 * 119.99920 * 179.97438 * 18 17 14 20 20 C 1.38238 * 119.99938 * 0.02562 * 19 18 17 21 21 C 1.50701 * 120.00186 * 179.97438 * 20 19 18 22 22 C 1.52993 * 109.47322 * 240.00586 * 21 20 19 23 23 C 1.53001 * 109.47230 * 120.00353 * 21 20 19 24 24 C 1.38235 * 120.00098 * 0.25795 * 20 19 18 25 25 C 1.38234 * 119.99864 * 359.46837 * 24 20 19 26 26 H 1.09005 * 109.46893 * 59.99590 * 1 2 3 27 27 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46933 * 299.99526 * 1 2 3 29 29 H 1.09007 * 109.47081 * 240.00115 * 2 1 3 30 30 H 1.08995 * 109.47160 * 120.00836 * 2 1 3 31 31 H 1.09003 * 109.47017 * 60.00563 * 3 2 1 32 32 H 1.08998 * 109.47263 * 300.00293 * 3 2 1 33 33 H 1.08995 * 109.46978 * 60.00540 * 4 3 2 34 34 H 1.09005 * 109.47001 * 300.00382 * 4 3 2 35 35 H 0.97009 * 119.98995 * 179.97438 * 9 8 6 36 36 H 1.07999 * 120.00245 * 359.97438 * 18 17 14 37 37 H 1.07994 * 120.00230 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47136 * 0.02562 * 21 20 19 39 39 H 1.09002 * 109.47489 * 299.99732 * 22 21 20 40 40 H 1.09004 * 109.47337 * 59.99835 * 22 21 20 41 41 H 1.09008 * 109.47334 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47192 * 59.99962 * 23 21 20 43 43 H 1.08998 * 109.47216 * 180.02562 * 23 21 20 44 44 H 1.09005 * 109.46969 * 300.00482 * 23 21 20 45 45 H 1.07999 * 119.99988 * 179.72076 * 24 20 19 46 46 H 1.08004 * 120.00373 * 180.29634 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.1897 3.5039 -1.1799 7 1 4.0152 4.5693 -1.2117 8 6 4.5470 2.8243 -2.3363 9 7 5.2028 1.6861 -2.2546 10 14 4.0967 3.5250 -4.0083 11 1 4.7232 4.8617 -4.1698 12 1 4.5878 2.6156 -5.0746 13 1 2.6209 3.6546 -4.1097 14 16 4.4516 3.5623 1.4303 15 8 3.8239 2.8078 2.4580 16 8 4.2270 4.9522 1.2387 17 6 6.1878 3.3657 1.6586 18 6 7.0618 4.3157 1.1641 19 6 8.4237 4.1618 1.3436 20 6 8.9117 3.0576 2.0172 21 6 10.3965 2.8895 2.2124 22 6 10.8536 1.5874 1.5518 23 6 10.7118 2.8402 3.7088 24 6 8.0380 2.1046 2.5065 25 6 6.6757 2.2614 2.3320 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9286 0.8909 35 1 5.4522 1.2110 -3.0628 36 1 6.6806 5.1781 0.6376 37 1 9.1065 4.9041 0.9577 38 1 10.9202 3.7308 1.7586 39 1 10.3299 0.7462 2.0059 40 1 10.6290 1.6225 0.4857 41 1 11.9277 1.4660 1.6926 42 1 10.1881 1.9991 4.1630 43 1 11.7858 2.7191 3.8500 44 1 10.3861 3.7679 4.1794 45 1 8.4195 1.2397 3.0288 46 1 5.9928 1.5193 2.7184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255310189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:16 Heat of formation + Delta-G solvation = -89.502959 kcal Electronic energy + Delta-G solvation = -26501.592610 eV Core-core repulsion = 22902.632518 eV Total energy + Delta-G solvation = -3598.960092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.43482 -38.21486 -37.76144 -36.41925 -36.27694 -35.38013 -33.33075 -31.95382 -30.80531 -29.71103 -27.99963 -26.56826 -24.62915 -23.95194 -23.61799 -21.86048 -21.09844 -20.29505 -19.27022 -18.42366 -18.07033 -16.98362 -16.55838 -16.40420 -16.11095 -15.82693 -15.52900 -15.12685 -14.85709 -14.74510 -14.54826 -14.30032 -14.01217 -13.98801 -13.77807 -13.45151 -13.21115 -13.13471 -13.03409 -12.95389 -12.72313 -12.66258 -12.56251 -12.36348 -12.15739 -12.09569 -12.06541 -11.92022 -11.82708 -11.64325 -11.58131 -11.34148 -11.28701 -10.98094 -9.94880 -9.91130 -9.64852 -8.39280 -6.02594 -0.11858 0.13037 0.41850 1.49609 1.53934 1.62284 2.27312 2.51948 2.75990 2.91797 3.25230 3.65034 3.69023 3.88286 4.02420 4.15292 4.18727 4.21945 4.28292 4.37017 4.38643 4.49967 4.52430 4.59206 4.80108 4.87826 4.88734 4.92017 4.92353 4.96866 5.00010 5.04168 5.05799 5.10901 5.24132 5.27290 5.29684 5.35734 5.36831 5.37545 5.44017 5.45502 5.60624 5.62510 5.80289 6.02715 6.41639 6.82540 7.31212 8.55674 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004578 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.644708 B = 6115.158476 C = 6934.859367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.126 4.126 4 C 0.122 3.878 5 N -0.809 5.809 6 C -0.271 4.271 7 H 0.096 0.904 8 C 0.013 3.987 9 N -0.840 5.840 10 Si 0.979 3.021 11 H -0.266 1.266 12 H -0.271 1.271 13 H -0.264 1.264 14 S 2.538 3.462 15 O -1.024 7.024 16 O -1.018 7.018 17 C -0.676 4.676 18 C -0.042 4.042 19 C -0.147 4.147 20 C -0.041 4.041 21 C -0.057 4.057 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.048 4.048 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.282 0.718 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.149 0.851 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 -4.076 2.421 8.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.166 4.166 4 C -0.004 4.004 5 N -0.632 5.632 6 C -0.419 4.419 7 H 0.114 0.886 8 C -0.199 4.199 9 N -0.478 5.478 10 Si 0.801 3.199 11 H -0.191 1.191 12 H -0.196 1.196 13 H -0.188 1.188 14 S 2.644 3.356 15 O -1.014 7.014 16 O -1.008 7.008 17 C -0.759 4.759 18 C -0.061 4.061 19 C -0.166 4.166 20 C -0.041 4.041 21 C -0.075 4.075 22 C -0.199 4.199 23 C -0.198 4.198 24 C -0.157 4.157 25 C -0.068 4.068 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.166 0.834 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.167 0.833 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.909 -3.785 3.212 8.507 hybrid contribution 0.364 0.347 -0.695 0.858 sum 7.272 -3.439 2.516 8.429 Atomic orbital electron populations 1.21739 0.94572 1.02296 1.01728 1.21426 0.96855 0.95040 1.02142 1.21929 0.95665 0.98009 1.00990 1.21492 0.93491 0.82326 1.03119 1.53690 1.66650 1.23382 1.19453 1.19816 1.42322 0.95411 0.84345 0.88600 1.26402 0.93458 0.96668 1.03382 1.70033 1.30037 1.15996 1.31715 0.85200 0.79541 0.78700 0.76445 1.19095 1.19575 1.18845 1.10419 0.75463 0.74177 0.75575 1.93283 1.76301 1.71893 1.59904 1.93287 1.86044 1.34822 1.86690 1.31787 1.29902 1.03692 1.10531 1.20932 0.94231 0.96519 0.94464 1.21447 0.94717 0.99403 1.01015 1.20442 0.97094 0.92870 0.93710 1.20280 0.88846 1.00243 0.98177 1.21851 1.02206 0.95891 0.99996 1.21850 1.02678 1.02012 0.93291 1.21290 0.92178 1.00380 1.01889 1.20955 0.96989 0.94794 0.94023 0.92695 0.91051 0.93108 0.91536 0.91930 0.94040 0.92172 0.88099 0.93112 0.90791 0.86184 0.83425 0.89189 0.92414 0.93675 0.89999 0.92367 0.90075 0.93119 0.83342 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.12 -3.66 5.93 30.59 0.18 -3.48 16 3 C -0.13 -5.04 5.51 30.60 0.17 -4.88 16 4 C 0.12 5.51 4.97 86.38 0.43 5.94 16 5 N -0.81 -40.22 2.85 -343.44 -0.98 -41.19 16 6 C -0.27 -13.70 9.17 84.04 0.77 -12.93 16 7 H 0.10 4.96 7.45 -2.91 -0.02 4.94 16 8 C 0.01 0.61 4.98 84.86 0.42 1.03 16 9 N -0.84 -40.17 11.28 21.65 0.24 -39.92 16 10 Si 0.98 37.18 29.62 68.60 2.03 39.21 16 11 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 12 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 13 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 14 S 2.54 128.76 5.61 -56.49 -0.32 128.44 16 15 O -1.02 -53.71 16.08 -128.00 -2.06 -55.76 16 16 O -1.02 -56.38 16.28 -128.00 -2.08 -58.47 16 17 C -0.68 -30.95 5.97 22.27 0.13 -30.82 16 18 C -0.04 -1.80 9.52 22.27 0.21 -1.58 16 19 C -0.15 -5.06 9.67 22.27 0.22 -4.85 16 20 C -0.04 -1.25 4.78 -19.86 -0.09 -1.34 16 21 C -0.06 -1.23 3.09 -11.54 -0.04 -1.26 16 22 C -0.14 -2.79 9.00 71.98 0.65 -2.14 16 23 C -0.14 -2.54 9.01 71.98 0.65 -1.89 16 24 C -0.14 -4.59 8.71 22.27 0.19 -4.39 16 25 C -0.05 -1.97 9.52 22.27 0.21 -1.76 16 26 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.10 4.70 5.31 -2.39 -0.01 4.69 16 34 H 0.05 2.25 7.46 -2.38 -0.02 2.23 16 35 H 0.28 12.46 8.31 -92.70 -0.77 11.69 16 36 H 0.12 5.20 7.62 -2.91 -0.02 5.18 16 37 H 0.15 4.06 7.95 -2.91 -0.02 4.04 16 38 H 0.09 1.73 7.88 -2.39 -0.02 1.71 16 39 H 0.06 1.13 7.37 -2.39 -0.02 1.12 16 40 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.06 1.05 7.41 -2.39 -0.02 1.03 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.15 3.88 7.10 -2.91 -0.02 3.86 16 46 H 0.13 4.97 7.62 -2.91 -0.02 4.95 16 Total: -1.00 -63.50 383.84 2.60 -60.89 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.94 Total: 34.25 kcal Atomic # 6 Polarization: -72.26 SS G_CDS: 4.82 Total: -67.44 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -0.73 Total: -81.12 kcal Atomic # 8 Polarization: -110.09 SS G_CDS: -4.14 Total: -114.23 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 16 Polarization: 128.76 SS G_CDS: -0.32 Total: 128.44 kcal Total: -63.50 2.60 -60.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255310189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.608 kcal (2) G-P(sol) polarization free energy of solvation -63.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds