Wall clock time and date at job start Tue Mar 31 2020 15:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46684 * 2 1 4 4 C 1.53009 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47308 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99818 * 270.00053 * 5 4 3 7 7 H 1.08001 * 119.99963 * 144.49711 * 6 5 4 8 8 C 1.38816 * 119.99857 * 324.48980 * 6 5 4 9 9 N 1.31617 * 120.00134 * 337.79171 * 8 6 5 10 10 Si 1.86799 * 119.99599 * 157.78679 * 8 6 5 11 11 H 1.48500 * 109.47032 * 90.00388 * 10 8 6 12 12 H 1.48503 * 109.47323 * 210.00258 * 10 8 6 13 13 H 1.48501 * 109.47558 * 330.00278 * 10 8 6 14 14 C 1.46494 * 119.99686 * 90.00055 * 5 4 3 15 15 H 1.09000 * 109.47766 * 352.75494 * 14 5 4 16 16 C 1.53002 * 109.47258 * 112.76056 * 14 5 4 17 17 C 1.53010 * 109.46958 * 232.75733 * 14 5 4 18 18 S 1.81400 * 109.46889 * 65.48966 * 17 14 5 19 19 O 1.42098 * 110.54065 * 291.62477 * 18 17 14 20 20 O 1.42098 * 110.54587 * 68.37585 * 18 17 14 21 21 C 1.76201 * 104.44820 * 180.02562 * 18 17 14 22 22 C 1.38236 * 120.00054 * 269.72833 * 21 18 17 23 23 C 1.38233 * 119.99975 * 179.76682 * 22 21 18 24 24 C 1.38239 * 119.99963 * 0.50242 * 23 22 21 25 25 C 1.38234 * 119.99635 * 359.74954 * 24 23 22 26 26 C 1.38227 * 120.00549 * 359.97438 * 25 24 23 27 27 H 1.08991 * 109.47265 * 60.00768 * 1 2 3 28 28 H 1.09005 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47302 * 300.00056 * 1 2 3 30 30 H 1.08994 * 109.47250 * 239.99433 * 2 1 3 31 31 H 1.09000 * 109.46987 * 119.99327 * 2 1 3 32 32 H 1.08994 * 109.47740 * 59.99733 * 3 2 1 33 33 H 1.09000 * 109.46859 * 299.99406 * 3 2 1 34 34 H 1.09000 * 109.46669 * 59.99161 * 4 3 2 35 35 H 1.08996 * 109.46538 * 299.99920 * 4 3 2 36 36 H 0.97002 * 119.99295 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.46819 * 305.55907 * 16 14 5 38 38 H 1.08995 * 109.46899 * 65.55783 * 16 14 5 39 39 H 1.09001 * 109.47242 * 185.55813 * 16 14 5 40 40 H 1.08993 * 109.47178 * 185.48858 * 17 14 5 41 41 H 1.08994 * 109.46670 * 305.48866 * 17 14 5 42 42 H 1.08002 * 119.99856 * 359.97438 * 22 21 18 43 43 H 1.08004 * 120.00106 * 180.22604 * 23 22 21 44 44 H 1.07998 * 120.00037 * 179.72470 * 24 23 22 45 45 H 1.08009 * 119.99756 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.00368 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8239 -0.0013 6 6 4.2859 3.4690 -1.1875 7 1 4.0835 4.5263 -1.2747 8 6 4.7770 2.7641 -2.2778 9 7 5.4257 1.6339 -2.0928 10 14 4.5170 3.4195 -4.0076 11 1 5.6539 4.2994 -4.3796 12 1 4.4379 2.2835 -4.9608 13 1 3.2526 4.1966 -4.0578 14 6 4.3029 3.5148 1.2671 15 1 3.9474 2.8971 2.0919 16 6 5.8032 3.7676 1.4291 17 6 3.5571 4.8508 1.2723 18 16 1.7693 4.5453 1.2436 19 8 1.3779 3.9924 -0.0055 20 8 1.3430 3.9636 2.4680 21 6 1.0484 6.1531 1.2515 22 6 0.7435 6.7680 2.4514 23 6 0.1824 8.0313 2.4577 24 6 -0.0834 8.6755 1.2638 25 6 0.2166 8.0583 0.0638 26 6 0.7830 6.7974 0.0576 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9562 -0.8900 34 1 3.9329 0.9288 -0.8908 35 1 3.9336 0.9287 0.8891 36 1 5.7685 1.1412 -2.8549 37 1 6.3433 2.8264 1.3267 38 1 6.1391 4.4647 0.6615 39 1 5.9959 4.1918 2.4146 40 1 3.8161 5.4080 2.1725 41 1 3.8412 5.4287 0.3929 42 1 0.9469 6.2628 3.3841 43 1 -0.0524 8.5133 3.3953 44 1 -0.5259 9.6606 1.2686 45 1 0.0085 8.5614 -0.8690 46 1 1.0170 6.3152 -0.8799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255822130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:57 Heat of formation + Delta-G solvation = -31.658981 kcal Electronic energy + Delta-G solvation = -27284.889227 eV Core-core repulsion = 23688.437438 eV Total energy + Delta-G solvation = -3596.451789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.06360 -37.05760 -36.40552 -35.23755 -34.18097 -32.43638 -31.28586 -31.03497 -30.09199 -27.38097 -27.03575 -24.33223 -23.19941 -22.72819 -21.97386 -20.30180 -19.70452 -18.59793 -17.60892 -16.45854 -15.94852 -15.80471 -15.38535 -15.14816 -14.56071 -14.47339 -14.35558 -14.07008 -13.54099 -13.49194 -13.29494 -13.01374 -12.63140 -12.32390 -12.18419 -12.01418 -11.83440 -11.62795 -11.39414 -11.32314 -11.18004 -11.16531 -11.09852 -10.81798 -10.73237 -10.58373 -10.41659 -10.20529 -9.96780 -9.84748 -9.75768 -9.55113 -9.34147 -9.28241 -9.07781 -8.45405 -6.64951 -5.78359 -3.33211 0.57432 0.93203 1.25748 3.37159 3.41261 3.46199 3.51723 3.56898 4.44152 4.45807 4.58123 4.81090 4.86382 4.93040 5.13419 5.24738 5.29909 5.41900 5.45561 5.64853 5.66659 5.73443 5.80317 5.87745 5.92191 5.94455 6.14468 6.17365 6.25781 6.28734 6.29695 6.35257 6.45265 6.46692 6.68844 6.70397 6.79134 6.80391 6.81047 7.02424 7.07870 7.13812 7.61842 7.78190 7.88003 8.49529 9.15762 9.77688 10.33044 11.21965 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.005403 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.344387 B = 5181.437633 C = 5853.336045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.135 4.135 4 C 0.137 3.863 5 N -0.579 5.579 6 C -0.245 4.245 7 H 0.061 0.939 8 C 0.016 3.984 9 N -0.883 5.883 10 Si 0.891 3.109 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.274 1.274 14 C 0.175 3.825 15 H 0.063 0.937 16 C -0.138 4.138 17 C -0.600 4.600 18 S 2.483 3.517 19 O -0.900 6.900 20 O -0.958 6.958 21 C -0.660 4.660 22 C -0.032 4.032 23 C -0.146 4.146 24 C -0.077 4.077 25 C -0.144 4.144 26 C -0.022 4.022 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.021 0.979 36 H 0.254 0.746 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.034 0.966 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 9.491 7.587 14.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.175 4.175 4 C 0.012 3.988 5 N -0.300 5.300 6 C -0.375 4.375 7 H 0.078 0.922 8 C -0.184 4.184 9 N -0.525 5.525 10 Si 0.720 3.280 11 H -0.215 1.215 12 H -0.215 1.215 13 H -0.199 1.199 14 C 0.065 3.935 15 H 0.081 0.919 16 C -0.199 4.199 17 C -0.734 4.734 18 S 2.663 3.337 19 O -0.897 6.897 20 O -0.955 6.955 21 C -0.743 4.743 22 C -0.050 4.050 23 C -0.165 4.165 24 C -0.095 4.095 25 C -0.163 4.163 26 C -0.040 4.040 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.134 0.866 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.740 8.639 7.457 13.789 hybrid contribution 0.126 1.383 -0.878 1.643 sum -7.614 10.022 6.579 14.202 Atomic orbital electron populations 1.21764 0.97046 1.00131 1.01655 1.21498 0.94824 0.98780 1.00990 1.22389 0.99244 0.93953 1.01895 1.21185 0.89995 0.85603 1.01998 1.44146 1.73750 1.12111 0.99944 1.18798 1.37026 0.94255 0.87420 0.92180 1.25045 0.96772 0.97796 0.98823 1.69976 1.35664 1.17158 1.29748 0.86492 0.78327 0.78258 0.84920 1.21526 1.21470 1.19931 1.20055 0.94157 0.88408 0.90865 0.91863 1.22033 0.96472 1.02251 0.99132 1.30906 1.21518 1.10562 1.10378 1.06355 0.78449 0.73653 0.75240 1.93636 1.80574 1.73227 1.42264 1.93497 1.80823 1.74590 1.46581 1.31265 1.17547 1.26489 0.99028 1.20999 0.93110 0.94066 0.96856 1.21269 1.01211 0.95605 0.98420 1.21421 0.96006 0.99275 0.92770 1.21325 1.00727 0.95793 0.98416 1.21107 0.91986 0.93618 0.97314 0.92872 0.93879 0.93255 0.92372 0.93177 0.95244 0.89765 0.87911 0.96013 0.93546 0.92126 0.92162 0.94713 0.86618 0.84367 0.84450 0.85384 0.85612 0.85241 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 37.16 0.37 -2.09 16 2 C -0.12 -2.28 5.93 -26.73 -0.16 -2.44 16 3 C -0.13 -2.93 3.92 -26.73 -0.10 -3.04 16 4 C 0.14 3.21 5.24 -4.04 -0.02 3.19 16 5 N -0.58 -13.50 1.64 -165.66 -0.27 -13.77 16 6 C -0.24 -6.20 8.34 -15.06 -0.13 -6.33 16 7 H 0.06 1.48 6.47 -52.49 -0.34 1.14 16 8 C 0.02 0.43 4.95 -17.43 -0.09 0.34 16 9 N -0.88 -24.32 11.37 55.49 0.63 -23.69 16 10 Si 0.89 21.10 29.61 -169.99 -5.03 16.07 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 14 C 0.17 3.45 2.73 -67.93 -0.19 3.27 16 15 H 0.06 1.20 7.86 -51.93 -0.41 0.79 16 16 C -0.14 -2.57 9.20 37.16 0.34 -2.23 16 17 C -0.60 -10.08 5.26 37.16 0.20 -9.89 16 18 S 2.48 44.65 4.02 -107.50 -0.43 44.22 16 19 O -0.90 -18.87 12.68 -57.54 -0.73 -19.60 16 20 O -0.96 -18.81 16.81 -57.54 -0.97 -19.78 16 21 C -0.66 -10.16 5.66 -39.58 -0.22 -10.39 16 22 C -0.03 -0.43 9.47 -39.58 -0.37 -0.80 16 23 C -0.15 -1.63 10.05 -39.58 -0.40 -2.03 16 24 C -0.08 -0.81 10.05 -39.58 -0.40 -1.20 16 25 C -0.14 -1.70 10.05 -39.59 -0.40 -2.10 16 26 C -0.02 -0.31 9.47 -39.58 -0.37 -0.69 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.03 0.63 5.94 -51.93 -0.31 0.32 16 33 H 0.08 2.01 7.03 -51.93 -0.37 1.65 16 34 H 0.10 2.68 5.39 -51.93 -0.28 2.40 16 35 H 0.02 0.48 7.99 -51.93 -0.41 0.06 16 36 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.17 7.98 -51.93 -0.41 0.75 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.14 2.31 6.52 -51.93 -0.34 1.98 16 42 H 0.14 1.68 7.57 -52.49 -0.40 1.28 16 43 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 46 H 0.15 2.09 7.57 -52.49 -0.40 1.69 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -31.17 375.61 -10.53 -41.70 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.45 Total: 5.58 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: -1.94 Total: -36.41 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.36 Total: -37.46 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.70 Total: -39.38 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 16 Polarization: 44.65 SS G_CDS: -0.43 Total: 44.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.17 -10.53 -41.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255822130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.043 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds