Wall clock time and date at job start Tue Mar 31 2020 15:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46684 * 2 1 4 4 C 1.53009 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47308 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99818 * 270.00053 * 5 4 3 7 7 H 1.08001 * 119.99963 * 144.49711 * 6 5 4 8 8 C 1.38816 * 119.99857 * 324.48980 * 6 5 4 9 9 N 1.31617 * 120.00134 * 337.79171 * 8 6 5 10 10 Si 1.86799 * 119.99599 * 157.78679 * 8 6 5 11 11 H 1.48500 * 109.47032 * 90.00388 * 10 8 6 12 12 H 1.48503 * 109.47323 * 210.00258 * 10 8 6 13 13 H 1.48501 * 109.47558 * 330.00278 * 10 8 6 14 14 C 1.46494 * 119.99686 * 90.00055 * 5 4 3 15 15 H 1.09000 * 109.47766 * 352.75494 * 14 5 4 16 16 C 1.53002 * 109.47258 * 112.76056 * 14 5 4 17 17 C 1.53010 * 109.46958 * 232.75733 * 14 5 4 18 18 S 1.81400 * 109.46889 * 65.48966 * 17 14 5 19 19 O 1.42098 * 110.54065 * 291.62477 * 18 17 14 20 20 O 1.42098 * 110.54587 * 68.37585 * 18 17 14 21 21 C 1.76201 * 104.44820 * 180.02562 * 18 17 14 22 22 C 1.38236 * 120.00054 * 269.72833 * 21 18 17 23 23 C 1.38233 * 119.99975 * 179.76682 * 22 21 18 24 24 C 1.38239 * 119.99963 * 0.50242 * 23 22 21 25 25 C 1.38234 * 119.99635 * 359.74954 * 24 23 22 26 26 C 1.38227 * 120.00549 * 359.97438 * 25 24 23 27 27 H 1.08991 * 109.47265 * 60.00768 * 1 2 3 28 28 H 1.09005 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47302 * 300.00056 * 1 2 3 30 30 H 1.08994 * 109.47250 * 239.99433 * 2 1 3 31 31 H 1.09000 * 109.46987 * 119.99327 * 2 1 3 32 32 H 1.08994 * 109.47740 * 59.99733 * 3 2 1 33 33 H 1.09000 * 109.46859 * 299.99406 * 3 2 1 34 34 H 1.09000 * 109.46669 * 59.99161 * 4 3 2 35 35 H 1.08996 * 109.46538 * 299.99920 * 4 3 2 36 36 H 0.97002 * 119.99295 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.46819 * 305.55907 * 16 14 5 38 38 H 1.08995 * 109.46899 * 65.55783 * 16 14 5 39 39 H 1.09001 * 109.47242 * 185.55813 * 16 14 5 40 40 H 1.08993 * 109.47178 * 185.48858 * 17 14 5 41 41 H 1.08994 * 109.46670 * 305.48866 * 17 14 5 42 42 H 1.08002 * 119.99856 * 359.97438 * 22 21 18 43 43 H 1.08004 * 120.00106 * 180.22604 * 23 22 21 44 44 H 1.07998 * 120.00037 * 179.72470 * 24 23 22 45 45 H 1.08009 * 119.99756 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.00368 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8239 -0.0013 6 6 4.2859 3.4690 -1.1875 7 1 4.0835 4.5263 -1.2747 8 6 4.7770 2.7641 -2.2778 9 7 5.4257 1.6339 -2.0928 10 14 4.5170 3.4195 -4.0076 11 1 5.6539 4.2994 -4.3796 12 1 4.4379 2.2835 -4.9608 13 1 3.2526 4.1966 -4.0578 14 6 4.3029 3.5148 1.2671 15 1 3.9474 2.8971 2.0919 16 6 5.8032 3.7676 1.4291 17 6 3.5571 4.8508 1.2723 18 16 1.7693 4.5453 1.2436 19 8 1.3779 3.9924 -0.0055 20 8 1.3430 3.9636 2.4680 21 6 1.0484 6.1531 1.2515 22 6 0.7435 6.7680 2.4514 23 6 0.1824 8.0313 2.4577 24 6 -0.0834 8.6755 1.2638 25 6 0.2166 8.0583 0.0638 26 6 0.7830 6.7974 0.0576 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9562 -0.8900 34 1 3.9329 0.9288 -0.8908 35 1 3.9336 0.9287 0.8891 36 1 5.7685 1.1412 -2.8549 37 1 6.3433 2.8264 1.3267 38 1 6.1391 4.4647 0.6615 39 1 5.9959 4.1918 2.4146 40 1 3.8161 5.4080 2.1725 41 1 3.8412 5.4287 0.3929 42 1 0.9469 6.2628 3.3841 43 1 -0.0524 8.5133 3.3953 44 1 -0.5259 9.6606 1.2686 45 1 0.0085 8.5614 -0.8690 46 1 1.0170 6.3152 -0.8799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255822130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:56 Heat of formation + Delta-G solvation = -48.979033 kcal Electronic energy + Delta-G solvation = -27285.640281 eV Core-core repulsion = 23688.437438 eV Total energy + Delta-G solvation = -3597.202842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.00970 -38.78073 -37.89912 -36.74783 -35.75524 -34.26989 -32.28561 -31.97378 -31.80090 -29.10943 -28.50500 -26.16405 -24.28132 -23.67191 -23.55268 -21.88461 -21.47332 -19.90816 -18.82474 -18.24473 -17.35350 -17.11763 -16.76759 -16.59166 -16.11219 -16.02535 -15.56995 -15.43299 -15.22338 -14.86538 -14.46032 -14.15753 -14.00381 -13.86527 -13.59790 -13.58579 -13.20317 -13.12382 -12.95318 -12.82621 -12.79072 -12.74591 -12.55076 -12.45325 -12.22974 -12.18503 -11.87489 -11.79715 -11.67458 -11.51994 -11.23965 -11.15757 -11.12310 -10.42915 -10.31292 -10.02610 -8.55866 -7.75399 -5.33031 -0.74216 -0.12274 0.31591 1.45152 1.51042 1.59829 2.16178 2.52574 2.54864 3.07217 3.29889 3.33513 3.53470 3.85074 3.87615 3.99345 4.11905 4.16477 4.23336 4.27027 4.41174 4.42415 4.46508 4.55670 4.68014 4.71837 4.72876 4.82792 4.96698 4.98847 5.01473 5.08051 5.13340 5.15528 5.22048 5.25681 5.29154 5.33805 5.38523 5.48287 5.56883 5.76397 5.80210 5.90203 5.97631 6.53669 7.21781 7.87947 8.40439 9.22599 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.005403 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.344387 B = 5181.437633 C = 5853.336045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C -0.123 4.123 4 C 0.137 3.863 5 N -0.593 5.593 6 C -0.237 4.237 7 H 0.063 0.937 8 C -0.034 4.034 9 N -0.914 5.914 10 Si 0.937 3.063 11 H -0.282 1.282 12 H -0.296 1.296 13 H -0.275 1.275 14 C 0.163 3.837 15 H 0.069 0.931 16 C -0.132 4.132 17 C -0.594 4.594 18 S 2.487 3.513 19 O -0.941 6.941 20 O -0.981 6.981 21 C -0.671 4.671 22 C -0.048 4.048 23 C -0.141 4.141 24 C -0.066 4.066 25 C -0.146 4.146 26 C -0.047 4.047 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.248 0.752 37 H 0.037 0.963 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.165 0.835 44 H 0.168 0.832 45 H 0.155 0.845 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.701 12.356 9.343 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.163 4.163 4 C 0.011 3.989 5 N -0.314 5.314 6 C -0.368 4.368 7 H 0.081 0.919 8 C -0.231 4.231 9 N -0.559 5.559 10 Si 0.766 3.234 11 H -0.209 1.209 12 H -0.223 1.223 13 H -0.200 1.200 14 C 0.055 3.945 15 H 0.087 0.913 16 C -0.192 4.192 17 C -0.728 4.728 18 S 2.672 3.328 19 O -0.938 6.938 20 O -0.978 6.978 21 C -0.759 4.759 22 C -0.067 4.067 23 C -0.160 4.160 24 C -0.084 4.084 25 C -0.164 4.164 26 C -0.066 4.066 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.177 0.823 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.182 0.818 44 H 0.185 0.815 45 H 0.173 0.827 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.105 11.474 9.217 17.306 hybrid contribution 0.441 0.677 -1.275 1.509 sum -8.664 12.151 7.942 16.905 Atomic orbital electron populations 1.21729 0.95256 1.01931 1.01293 1.21507 0.96454 0.96654 1.01519 1.22202 0.98036 0.95738 1.00360 1.21086 0.90998 0.85989 1.00818 1.44227 1.74340 1.12031 1.00779 1.19007 1.35021 0.94345 0.88393 0.91918 1.25592 0.97684 0.98488 1.01344 1.70089 1.37610 1.18443 1.29764 0.85746 0.78150 0.77437 0.82023 1.20884 1.22276 1.20009 1.20316 0.95447 0.89431 0.89310 0.91259 1.21957 0.95219 1.01026 1.01045 1.30635 1.20427 1.09083 1.12650 1.05506 0.78682 0.74599 0.73993 1.93598 1.81331 1.75317 1.43597 1.93460 1.81272 1.76141 1.46968 1.30648 1.19776 1.24959 1.00523 1.21269 0.93772 0.95389 0.96261 1.21730 0.99424 0.94414 1.00410 1.21951 0.94094 1.00591 0.91730 1.21679 0.99628 0.94628 1.00488 1.21185 0.93716 0.95190 0.96536 0.93545 0.90979 0.93329 0.92707 0.91770 0.95433 0.92585 0.90669 0.95512 0.94263 0.94362 0.93355 0.90664 0.82326 0.84314 0.83698 0.81776 0.81485 0.82733 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.91 71.98 0.71 -4.00 16 2 C -0.12 -4.63 5.93 30.59 0.18 -4.45 16 3 C -0.12 -5.56 3.92 30.60 0.12 -5.44 16 4 C 0.14 6.65 5.24 86.38 0.45 7.10 16 5 N -0.59 -28.37 1.64 -678.01 -1.11 -29.48 16 6 C -0.24 -12.35 8.34 84.03 0.70 -11.65 16 7 H 0.06 3.16 6.47 -2.91 -0.02 3.14 16 8 C -0.03 -1.87 4.95 84.86 0.42 -1.45 16 9 N -0.91 -52.50 11.37 21.65 0.25 -52.25 16 10 Si 0.94 44.71 29.61 68.60 2.03 46.74 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 13 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 14 C 0.16 6.41 2.73 45.00 0.12 6.53 16 15 H 0.07 2.61 7.86 -2.39 -0.02 2.59 16 16 C -0.13 -4.81 9.20 71.98 0.66 -4.15 16 17 C -0.59 -19.38 5.26 71.99 0.38 -19.00 16 18 S 2.49 89.70 4.02 -56.49 -0.23 89.47 16 19 O -0.94 -40.97 12.68 -127.65 -1.62 -42.58 16 20 O -0.98 -38.42 16.81 -127.65 -2.15 -40.57 16 21 C -0.67 -19.99 5.66 22.27 0.13 -19.87 16 22 C -0.05 -1.18 9.47 22.27 0.21 -0.97 16 23 C -0.14 -2.53 10.05 22.27 0.22 -2.30 16 24 C -0.07 -1.07 10.05 22.27 0.22 -0.85 16 25 C -0.15 -3.01 10.05 22.27 0.22 -2.78 16 26 C -0.05 -1.33 9.47 22.27 0.21 -1.12 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.03 1.22 5.94 -2.39 -0.01 1.20 16 33 H 0.06 2.82 7.03 -2.39 -0.02 2.80 16 34 H 0.08 4.13 5.39 -2.39 -0.01 4.12 16 35 H 0.03 1.23 7.99 -2.39 -0.02 1.21 16 36 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 1.85 7.98 -2.39 -0.02 1.83 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 40 H 0.16 3.73 8.14 -2.39 -0.02 3.71 16 41 H 0.14 4.58 6.52 -2.39 -0.02 4.56 16 42 H 0.15 3.21 7.57 -2.91 -0.02 3.19 16 43 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 44 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 46 H 0.13 3.91 7.57 -2.91 -0.02 3.89 16 Total: -1.00 -70.80 375.61 3.09 -67.71 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.95 Total: 25.37 kcal Atomic # 6 Polarization: -69.37 SS G_CDS: 4.97 Total: -64.40 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -0.86 Total: -81.74 kcal Atomic # 8 Polarization: -79.39 SS G_CDS: -3.76 Total: -83.15 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 89.70 SS G_CDS: -0.23 Total: 89.47 kcal Total: -70.80 3.09 -67.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255822130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.727 kcal (2) G-P(sol) polarization free energy of solvation -70.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds