Wall clock time and date at job start Tue Mar 31 2020 15:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 C 1.52998 * 109.47353 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47543 * 179.97438 * 4 3 2 6 6 C 1.36939 * 119.99735 * 89.99910 * 5 4 3 7 7 H 1.08000 * 119.99660 * 214.21860 * 6 5 4 8 8 C 1.38806 * 120.00191 * 34.21533 * 6 5 4 9 9 N 1.31624 * 119.99929 * 23.46695 * 8 6 5 10 10 Si 1.86803 * 120.00218 * 203.46475 * 8 6 5 11 11 H 1.48502 * 109.46862 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47059 * 120.00138 * 10 8 6 13 13 H 1.48493 * 109.47156 * 240.00070 * 10 8 6 14 14 C 1.46503 * 120.00089 * 270.00258 * 5 4 3 15 15 H 1.09004 * 109.46652 * 6.84387 * 14 5 4 16 16 C 1.52996 * 109.46826 * 246.84259 * 14 5 4 17 17 C 1.53004 * 109.46988 * 126.84236 * 14 5 4 18 18 S 1.81399 * 109.47408 * 299.33426 * 17 14 5 19 19 O 1.42101 * 110.54158 * 291.62667 * 18 17 14 20 20 O 1.42105 * 110.54446 * 68.37366 * 18 17 14 21 21 C 1.76192 * 104.45081 * 180.02562 * 18 17 14 22 22 C 1.38238 * 120.00033 * 269.72928 * 21 18 17 23 23 C 1.38235 * 119.99817 * 179.76628 * 22 21 18 24 24 C 1.38237 * 120.00286 * 0.50299 * 23 22 21 25 25 C 1.38240 * 119.99804 * 359.74961 * 24 23 22 26 26 C 1.38234 * 119.99742 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46750 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47229 * 300.00503 * 1 2 3 29 29 H 1.09004 * 109.46844 * 60.00412 * 1 2 3 30 30 H 1.09001 * 109.47229 * 239.99497 * 2 1 3 31 31 H 1.09004 * 109.46844 * 119.99588 * 2 1 3 32 32 H 1.08998 * 109.47148 * 59.99237 * 3 2 1 33 33 H 1.09004 * 109.46915 * 299.99545 * 3 2 1 34 34 H 1.09000 * 109.46893 * 300.00520 * 4 3 2 35 35 H 1.09001 * 109.46947 * 59.99540 * 4 3 2 36 36 H 0.97000 * 119.99775 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.47057 * 53.52830 * 16 14 5 38 38 H 1.09008 * 109.46720 * 173.52002 * 16 14 5 39 39 H 1.08999 * 109.47381 * 293.51956 * 16 14 5 40 40 H 1.08995 * 109.46831 * 59.33547 * 17 14 5 41 41 H 1.09001 * 109.46653 * 179.32993 * 17 14 5 42 42 H 1.07991 * 120.00151 * 359.97438 * 22 21 18 43 43 H 1.07995 * 119.99896 * 180.22630 * 23 22 21 44 44 H 1.07999 * 120.00197 * 179.72218 * 24 23 22 45 45 H 1.07999 * 120.00008 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.99556 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2861 3.4699 1.1857 7 1 4.1035 4.5314 1.2659 8 6 4.7516 2.7608 2.2844 9 7 5.4016 1.6296 2.1103 10 14 4.4556 3.4118 4.0101 11 1 3.7064 4.6918 3.9345 12 1 3.6653 2.4212 4.7841 13 1 5.7593 3.6399 4.6835 14 6 4.3031 3.5136 -1.2690 15 1 3.9539 2.8921 -2.0936 16 6 5.8023 3.7750 -1.4266 17 6 3.5494 4.8451 -1.2792 18 16 1.7701 4.5342 -1.1121 19 8 1.2635 3.8982 -2.2775 20 8 1.4708 4.0344 0.1840 21 6 1.0391 6.1371 -1.1400 22 6 0.8475 6.8300 0.0407 23 6 0.2784 8.0896 0.0183 24 6 -0.1087 8.6520 -1.1838 25 6 0.0782 7.9568 -2.3640 26 6 0.6525 6.6996 -2.3421 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6768 1.9563 -0.8901 34 1 3.9330 0.9288 0.8908 35 1 3.9337 0.9286 -0.8891 36 1 5.7266 1.1338 2.8781 37 1 6.3489 2.8399 -1.3044 38 1 5.9977 4.1831 -2.4183 39 1 6.1284 4.4881 -0.6695 40 1 3.8902 5.4618 -0.4476 41 1 3.7410 5.3638 -2.2186 42 1 1.1454 6.3887 0.9802 43 1 0.1320 8.6324 0.9403 44 1 -0.5574 9.6342 -1.2008 45 1 -0.2245 8.3960 -3.3031 46 1 0.7981 6.1564 -3.2642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255822131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:00 Heat of formation + Delta-G solvation = -30.936400 kcal Electronic energy + Delta-G solvation = -27356.101304 eV Core-core repulsion = 23759.680849 eV Total energy + Delta-G solvation = -3596.420455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.05476 -37.07309 -36.36662 -35.19428 -34.18485 -32.43301 -31.27642 -31.02669 -30.08554 -27.38631 -27.03305 -24.33000 -23.18955 -22.71987 -21.97669 -20.31574 -19.70763 -18.58006 -17.58100 -16.42499 -15.93844 -15.79942 -15.39690 -15.11851 -14.55275 -14.46511 -14.34972 -14.06104 -13.53366 -13.48559 -13.28943 -13.00844 -12.64190 -12.34944 -12.17525 -11.95651 -11.82583 -11.65064 -11.37799 -11.28152 -11.16417 -11.14821 -11.09636 -10.82137 -10.73432 -10.56917 -10.39664 -10.20925 -9.94430 -9.84488 -9.76639 -9.54377 -9.33996 -9.27407 -9.07083 -8.44481 -6.67400 -5.77748 -3.30333 0.59347 0.94636 1.26388 3.39598 3.43036 3.49077 3.52134 3.60019 4.46878 4.47416 4.59826 4.81694 4.87280 4.93661 5.13407 5.25612 5.30764 5.41839 5.46473 5.65381 5.66735 5.73475 5.79973 5.88269 5.92378 5.94811 6.15300 6.18003 6.24845 6.28886 6.29689 6.34535 6.44796 6.46289 6.67840 6.69546 6.78265 6.80028 6.81237 7.00968 7.06285 7.12795 7.60379 7.79625 7.87511 8.49168 9.15707 9.78401 10.32221 11.22853 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.005488 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.192055 B = 5100.468434 C = 5766.961058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.142 4.142 4 C 0.137 3.863 5 N -0.581 5.581 6 C -0.239 4.239 7 H 0.062 0.938 8 C 0.014 3.986 9 N -0.883 5.883 10 Si 0.893 3.107 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.293 1.293 14 C 0.174 3.826 15 H 0.065 0.935 16 C -0.138 4.138 17 C -0.601 4.601 18 S 2.485 3.515 19 O -0.958 6.958 20 O -0.897 6.897 21 C -0.661 4.661 22 C -0.022 4.022 23 C -0.144 4.144 24 C -0.077 4.077 25 C -0.146 4.146 26 C -0.032 4.032 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.105 0.895 35 H 0.022 0.978 36 H 0.254 0.746 37 H 0.060 0.940 38 H 0.034 0.966 39 H 0.059 0.941 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.145 0.855 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 9.462 -7.746 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.182 4.182 4 C 0.012 3.988 5 N -0.302 5.302 6 C -0.369 4.369 7 H 0.080 0.920 8 C -0.186 4.186 9 N -0.526 5.526 10 Si 0.722 3.278 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.220 1.220 14 C 0.064 3.936 15 H 0.083 0.917 16 C -0.199 4.199 17 C -0.734 4.734 18 S 2.665 3.335 19 O -0.955 6.955 20 O -0.894 6.894 21 C -0.744 4.744 22 C -0.041 4.041 23 C -0.163 4.163 24 C -0.095 4.095 25 C -0.165 4.165 26 C -0.050 4.050 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.122 0.878 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.154 0.846 41 H 0.133 0.867 42 H 0.163 0.837 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.723 8.626 -7.556 13.826 hybrid contribution 0.080 1.365 0.812 1.590 sum -7.643 9.991 -6.744 14.273 Atomic orbital electron populations 1.21774 0.97043 1.00194 1.01664 1.21480 0.94815 0.98651 1.01021 1.22469 0.99462 0.94339 1.01901 1.21194 0.89936 0.85575 1.02126 1.44248 1.73663 1.12218 1.00040 1.18856 1.37343 0.93789 0.86944 0.92026 1.25003 0.97002 0.97818 0.98774 1.69998 1.36070 1.17146 1.29396 0.86391 0.77360 0.78899 0.85118 1.19924 1.21344 1.22039 1.20070 0.94112 0.88546 0.90866 0.91724 1.22032 0.96450 1.02299 0.99089 1.30931 1.21815 1.10596 1.10043 1.06349 0.78240 0.73530 0.75410 1.93494 1.78433 1.72514 1.51031 1.93629 1.82538 1.74913 1.38334 1.31313 1.17444 1.26490 0.99151 1.21110 0.92363 0.93234 0.97364 1.21325 1.00524 0.96062 0.98360 1.21418 0.96048 0.99242 0.92800 1.21269 1.01295 0.95421 0.98530 1.21000 0.92893 0.94407 0.96748 0.93828 0.92895 0.93188 0.93137 0.92344 0.89522 0.95127 0.87759 0.95968 0.93615 0.92077 0.94698 0.92221 0.84626 0.86701 0.83707 0.85256 0.85623 0.85394 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 37.16 0.37 -2.11 16 2 C -0.12 -2.26 5.93 -26.73 -0.16 -2.42 16 3 C -0.14 -3.09 3.91 -26.73 -0.10 -3.20 16 4 C 0.14 3.21 5.24 -4.04 -0.02 3.19 16 5 N -0.58 -13.55 1.51 -165.66 -0.25 -13.80 16 6 C -0.24 -6.07 7.79 -15.06 -0.12 -6.19 16 7 H 0.06 1.53 6.58 -52.49 -0.35 1.18 16 8 C 0.01 0.38 4.94 -17.43 -0.09 0.29 16 9 N -0.88 -24.39 11.36 55.49 0.63 -23.76 16 10 Si 0.89 21.33 29.61 -169.99 -5.03 16.30 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.17 3.42 2.78 -67.93 -0.19 3.23 16 15 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 16 C -0.14 -2.56 9.18 37.16 0.34 -2.21 16 17 C -0.60 -10.10 5.20 37.16 0.19 -9.90 16 18 S 2.49 45.15 3.85 -107.50 -0.41 44.73 16 19 O -0.96 -18.95 16.34 -57.54 -0.94 -19.89 16 20 O -0.90 -19.04 12.29 -57.54 -0.71 -19.75 16 21 C -0.66 -10.28 5.66 -39.58 -0.22 -10.50 16 22 C -0.02 -0.32 9.47 -39.58 -0.37 -0.70 16 23 C -0.14 -1.72 10.05 -39.58 -0.40 -2.11 16 24 C -0.08 -0.82 10.05 -39.58 -0.40 -1.21 16 25 C -0.15 -1.64 10.05 -39.58 -0.40 -2.04 16 26 C -0.03 -0.43 9.47 -39.58 -0.37 -0.81 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 2.08 6.83 -51.93 -0.35 1.72 16 33 H 0.03 0.66 5.71 -51.93 -0.30 0.36 16 34 H 0.10 2.73 5.35 -51.93 -0.28 2.45 16 35 H 0.02 0.49 7.98 -51.93 -0.41 0.07 16 36 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.06 1.15 8.00 -51.93 -0.42 0.73 16 40 H 0.14 2.25 6.74 -51.93 -0.35 1.90 16 41 H 0.11 1.51 8.14 -51.92 -0.42 1.09 16 42 H 0.15 2.11 7.57 -52.49 -0.40 1.72 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 46 H 0.14 1.69 7.57 -52.48 -0.40 1.29 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -31.20 373.71 -10.47 -41.67 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.44 Total: 5.56 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: -1.94 Total: -36.70 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.38 Total: -37.56 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.65 Total: -39.64 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Atomic # 16 Polarization: 45.15 SS G_CDS: -0.41 Total: 44.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.20 -10.47 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255822131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.732 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds