Wall clock time and date at job start Tue Mar 31 2020 15:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 C 1.52998 * 109.47353 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47543 * 179.97438 * 4 3 2 6 6 C 1.36939 * 119.99735 * 89.99910 * 5 4 3 7 7 H 1.08000 * 119.99660 * 214.21860 * 6 5 4 8 8 C 1.38806 * 120.00191 * 34.21533 * 6 5 4 9 9 N 1.31624 * 119.99929 * 23.46695 * 8 6 5 10 10 Si 1.86803 * 120.00218 * 203.46475 * 8 6 5 11 11 H 1.48502 * 109.46862 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47059 * 120.00138 * 10 8 6 13 13 H 1.48493 * 109.47156 * 240.00070 * 10 8 6 14 14 C 1.46503 * 120.00089 * 270.00258 * 5 4 3 15 15 H 1.09004 * 109.46652 * 6.84387 * 14 5 4 16 16 C 1.52996 * 109.46826 * 246.84259 * 14 5 4 17 17 C 1.53004 * 109.46988 * 126.84236 * 14 5 4 18 18 S 1.81399 * 109.47408 * 299.33426 * 17 14 5 19 19 O 1.42101 * 110.54158 * 291.62667 * 18 17 14 20 20 O 1.42105 * 110.54446 * 68.37366 * 18 17 14 21 21 C 1.76192 * 104.45081 * 180.02562 * 18 17 14 22 22 C 1.38238 * 120.00033 * 269.72928 * 21 18 17 23 23 C 1.38235 * 119.99817 * 179.76628 * 22 21 18 24 24 C 1.38237 * 120.00286 * 0.50299 * 23 22 21 25 25 C 1.38240 * 119.99804 * 359.74961 * 24 23 22 26 26 C 1.38234 * 119.99742 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46750 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47229 * 300.00503 * 1 2 3 29 29 H 1.09004 * 109.46844 * 60.00412 * 1 2 3 30 30 H 1.09001 * 109.47229 * 239.99497 * 2 1 3 31 31 H 1.09004 * 109.46844 * 119.99588 * 2 1 3 32 32 H 1.08998 * 109.47148 * 59.99237 * 3 2 1 33 33 H 1.09004 * 109.46915 * 299.99545 * 3 2 1 34 34 H 1.09000 * 109.46893 * 300.00520 * 4 3 2 35 35 H 1.09001 * 109.46947 * 59.99540 * 4 3 2 36 36 H 0.97000 * 119.99775 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.47057 * 53.52830 * 16 14 5 38 38 H 1.09008 * 109.46720 * 173.52002 * 16 14 5 39 39 H 1.08999 * 109.47381 * 293.51956 * 16 14 5 40 40 H 1.08995 * 109.46831 * 59.33547 * 17 14 5 41 41 H 1.09001 * 109.46653 * 179.32993 * 17 14 5 42 42 H 1.07991 * 120.00151 * 359.97438 * 22 21 18 43 43 H 1.07995 * 119.99896 * 180.22630 * 23 22 21 44 44 H 1.07999 * 120.00197 * 179.72218 * 24 23 22 45 45 H 1.07999 * 120.00008 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.99556 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2861 3.4699 1.1857 7 1 4.1035 4.5314 1.2659 8 6 4.7516 2.7608 2.2844 9 7 5.4016 1.6296 2.1103 10 14 4.4556 3.4118 4.0101 11 1 3.7064 4.6918 3.9345 12 1 3.6653 2.4212 4.7841 13 1 5.7593 3.6399 4.6835 14 6 4.3031 3.5136 -1.2690 15 1 3.9539 2.8921 -2.0936 16 6 5.8023 3.7750 -1.4266 17 6 3.5494 4.8451 -1.2792 18 16 1.7701 4.5342 -1.1121 19 8 1.2635 3.8982 -2.2775 20 8 1.4708 4.0344 0.1840 21 6 1.0391 6.1371 -1.1400 22 6 0.8475 6.8300 0.0407 23 6 0.2784 8.0896 0.0183 24 6 -0.1087 8.6520 -1.1838 25 6 0.0782 7.9568 -2.3640 26 6 0.6525 6.6996 -2.3421 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6768 1.9563 -0.8901 34 1 3.9330 0.9288 0.8908 35 1 3.9337 0.9286 -0.8891 36 1 5.7266 1.1338 2.8781 37 1 6.3489 2.8399 -1.3044 38 1 5.9977 4.1831 -2.4183 39 1 6.1284 4.4881 -0.6695 40 1 3.8902 5.4618 -0.4476 41 1 3.7410 5.3638 -2.2186 42 1 1.1454 6.3887 0.9802 43 1 0.1320 8.6324 0.9403 44 1 -0.5574 9.6342 -1.2008 45 1 -0.2245 8.3960 -3.3031 46 1 0.7981 6.1564 -3.2642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255822131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:59 Heat of formation + Delta-G solvation = -48.263478 kcal Electronic energy + Delta-G solvation = -27356.852663 eV Core-core repulsion = 23759.680849 eV Total energy + Delta-G solvation = -3597.171814 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.00908 -38.79827 -37.87141 -36.71853 -35.76057 -34.26670 -32.28777 -31.97352 -31.79307 -29.11650 -28.50054 -26.16563 -24.28121 -23.67165 -23.55593 -21.90095 -21.47611 -19.89813 -18.80870 -18.22203 -17.37551 -17.10111 -16.77162 -16.55627 -16.11061 -16.04428 -15.56631 -15.42921 -15.22213 -14.86864 -14.45992 -14.16943 -14.02131 -13.87674 -13.59322 -13.52241 -13.23501 -13.11520 -12.93271 -12.84506 -12.78047 -12.72221 -12.57424 -12.44685 -12.19043 -12.18454 -11.87299 -11.80175 -11.66737 -11.52523 -11.26679 -11.14639 -11.11172 -10.42470 -10.31351 -10.02692 -8.58508 -7.75384 -5.30732 -0.72712 -0.12089 0.31441 1.45068 1.51566 1.59154 2.18745 2.53028 2.55324 3.09125 3.30755 3.33587 3.53781 3.85324 3.87637 3.99349 4.11810 4.15130 4.23003 4.27562 4.41213 4.42840 4.45469 4.56213 4.67426 4.71329 4.72736 4.82535 4.95252 4.98794 5.01402 5.07417 5.11787 5.15675 5.21033 5.25291 5.29076 5.32628 5.38393 5.47361 5.56877 5.76395 5.80188 5.90206 5.96306 6.53448 7.21409 7.88141 8.39204 9.23152 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.005488 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.192055 B = 5100.468434 C = 5766.961058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.136 3.864 5 N -0.595 5.595 6 C -0.229 4.229 7 H 0.064 0.936 8 C -0.036 4.036 9 N -0.915 5.915 10 Si 0.936 3.064 11 H -0.267 1.267 12 H -0.298 1.298 13 H -0.292 1.292 14 C 0.162 3.838 15 H 0.072 0.928 16 C -0.132 4.132 17 C -0.595 4.595 18 S 2.489 3.511 19 O -0.981 6.981 20 O -0.940 6.940 21 C -0.673 4.673 22 C -0.048 4.048 23 C -0.146 4.146 24 C -0.066 4.066 25 C -0.141 4.141 26 C -0.048 4.048 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.028 0.972 36 H 0.247 0.753 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.138 0.862 41 H 0.159 0.841 42 H 0.131 0.869 43 H 0.155 0.845 44 H 0.168 0.832 45 H 0.165 0.835 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 12.361 -9.702 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.171 4.171 4 C 0.010 3.990 5 N -0.316 5.316 6 C -0.360 4.360 7 H 0.081 0.919 8 C -0.233 4.233 9 N -0.560 5.560 10 Si 0.765 3.235 11 H -0.191 1.191 12 H -0.225 1.225 13 H -0.220 1.220 14 C 0.054 3.946 15 H 0.090 0.910 16 C -0.192 4.192 17 C -0.728 4.728 18 S 2.674 3.326 19 O -0.978 6.978 20 O -0.937 6.937 21 C -0.760 4.760 22 C -0.067 4.067 23 C -0.164 4.164 24 C -0.084 4.084 25 C -0.160 4.160 26 C -0.067 4.067 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.156 0.844 41 H 0.177 0.823 42 H 0.149 0.851 43 H 0.173 0.827 44 H 0.185 0.815 45 H 0.182 0.818 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.176 11.496 -9.513 17.517 hybrid contribution 0.412 0.655 1.258 1.477 sum -8.764 12.151 -8.254 17.106 Atomic orbital electron populations 1.21741 0.95251 1.02001 1.01298 1.21493 0.96450 0.96546 1.01542 1.22286 0.98284 0.96118 1.00393 1.21093 0.90918 0.85977 1.00970 1.44318 1.74275 1.12124 1.00877 1.19032 1.35176 0.93814 0.87930 0.91861 1.25523 0.98061 0.98546 1.01152 1.70101 1.38127 1.18436 1.29358 0.85693 0.76973 0.78342 0.82453 1.19146 1.22504 1.21969 1.20342 0.95431 0.89522 0.89299 0.90994 1.21958 0.95174 1.01038 1.01072 1.30639 1.20450 1.09099 1.12645 1.05469 0.78535 0.74480 0.74161 1.93458 1.78917 1.74121 1.51316 1.93593 1.83303 1.76945 1.39818 1.30692 1.19694 1.24955 1.00688 1.21187 0.94088 0.94819 0.96591 1.21680 0.99428 0.94909 1.00408 1.21952 0.94128 1.00573 0.91728 1.21732 0.99566 0.94170 1.00512 1.21270 0.93501 0.95785 0.96139 0.90919 0.93596 0.93235 0.91676 0.92751 0.92330 0.95279 0.90555 0.95387 0.94323 0.94348 0.90637 0.93354 0.84397 0.82311 0.85099 0.82735 0.81471 0.81766 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.91 71.98 0.71 -4.04 16 2 C -0.12 -4.61 5.93 30.60 0.18 -4.42 16 3 C -0.13 -5.91 3.91 30.59 0.12 -5.79 16 4 C 0.14 6.62 5.24 86.38 0.45 7.07 16 5 N -0.60 -28.44 1.51 -678.04 -1.02 -29.46 16 6 C -0.23 -11.96 7.79 84.03 0.65 -11.30 16 7 H 0.06 3.21 6.58 -2.91 -0.02 3.19 16 8 C -0.04 -2.00 4.94 84.86 0.42 -1.58 16 9 N -0.91 -52.80 11.36 21.65 0.25 -52.55 16 10 Si 0.94 45.25 29.61 68.60 2.03 47.28 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 13 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 14 C 0.16 6.33 2.78 44.99 0.13 6.45 16 15 H 0.07 2.67 7.86 -2.39 -0.02 2.65 16 16 C -0.13 -4.77 9.18 71.98 0.66 -4.11 16 17 C -0.59 -19.30 5.20 71.98 0.37 -18.92 16 18 S 2.49 90.44 3.85 -56.49 -0.22 90.22 16 19 O -0.98 -38.63 16.34 -127.65 -2.09 -40.71 16 20 O -0.94 -41.34 12.29 -127.65 -1.57 -42.90 16 21 C -0.67 -20.17 5.66 22.27 0.13 -20.05 16 22 C -0.05 -1.35 9.47 22.27 0.21 -1.14 16 23 C -0.15 -3.02 10.05 22.27 0.22 -2.80 16 24 C -0.07 -1.08 10.05 22.27 0.22 -0.86 16 25 C -0.14 -2.54 10.05 22.27 0.22 -2.32 16 26 C -0.05 -1.19 9.47 22.27 0.21 -0.97 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.96 6.83 -2.39 -0.02 2.94 16 33 H 0.03 1.29 5.71 -2.39 -0.01 1.27 16 34 H 0.08 4.21 5.35 -2.39 -0.01 4.20 16 35 H 0.03 1.28 7.98 -2.39 -0.02 1.26 16 36 H 0.25 13.96 8.31 -92.71 -0.77 13.18 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.05 1.83 8.00 -2.39 -0.02 1.81 16 40 H 0.14 4.48 6.74 -2.39 -0.02 4.47 16 41 H 0.16 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.13 3.94 7.57 -2.92 -0.02 3.91 16 43 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 46 H 0.15 3.23 7.57 -2.91 -0.02 3.21 16 Total: -1.00 -71.12 373.71 3.25 -67.87 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.95 Total: 25.06 kcal Atomic # 6 Polarization: -69.71 SS G_CDS: 4.92 Total: -64.79 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -0.78 Total: -82.02 kcal Atomic # 8 Polarization: -79.96 SS G_CDS: -3.65 Total: -83.62 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 90.44 SS G_CDS: -0.22 Total: 90.22 kcal Total: -71.12 3.25 -67.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255822131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.609 kcal (2) G-P(sol) polarization free energy of solvation -71.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds