Wall clock time and date at job start Tue Mar 31 2020 15:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47502 * 2 1 4 4 C 1.52993 * 109.47218 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47146 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99794 * 84.99846 * 5 4 3 7 7 C 1.50701 * 109.47136 * 85.25127 * 6 5 4 8 8 H 1.07996 * 119.99798 * 4.88908 * 7 6 5 9 9 C 1.37873 * 120.00013 * 184.88964 * 7 6 5 10 10 N 1.31517 * 119.99707 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 120.00142 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47038 * 90.00058 * 11 9 7 13 13 H 1.48502 * 109.46999 * 210.00086 * 11 9 7 14 14 H 1.48503 * 109.46913 * 330.00089 * 11 9 7 15 15 S 1.65599 * 120.00181 * 265.00534 * 5 4 3 16 16 O 1.42106 * 106.40293 * 29.31461 * 15 5 4 17 17 O 1.42094 * 106.40571 * 162.24081 * 15 5 4 18 18 C 1.76198 * 107.21398 * 275.78040 * 15 5 4 19 19 C 1.38257 * 120.00207 * 14.75489 * 18 15 5 20 20 C 1.38216 * 120.00133 * 179.74553 * 19 18 15 21 21 C 1.38261 * 119.99957 * 0.52604 * 20 19 18 22 22 C 1.50692 * 120.00243 * 179.76837 * 21 20 19 23 23 C 1.38218 * 119.99827 * 359.75158 * 21 20 19 24 24 C 1.38216 * 120.00157 * 195.02806 * 18 15 5 25 25 C 1.50705 * 119.99725 * 359.97438 * 24 18 15 26 26 H 1.09002 * 109.46770 * 300.00261 * 1 2 3 27 27 H 1.08999 * 109.46887 * 59.99784 * 1 2 3 28 28 H 1.08997 * 109.47222 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47649 * 239.99871 * 2 1 3 30 30 H 1.09005 * 109.46825 * 119.99765 * 2 1 3 31 31 H 1.09007 * 109.46836 * 59.99558 * 3 2 1 32 32 H 1.08994 * 109.46823 * 300.00233 * 3 2 1 33 33 H 1.08994 * 109.47266 * 60.00323 * 4 3 2 34 34 H 1.08994 * 109.47540 * 299.99949 * 4 3 2 35 35 H 1.08999 * 109.46924 * 205.25013 * 6 5 4 36 36 H 1.09002 * 109.47545 * 325.24897 * 6 5 4 37 37 H 0.97000 * 119.99573 * 179.97438 * 10 9 7 38 38 H 1.08000 * 119.99832 * 359.97438 * 19 18 15 39 39 H 1.07998 * 120.00367 * 180.30090 * 20 19 18 40 40 H 1.09003 * 109.47452 * 269.98372 * 22 21 20 41 41 H 1.09002 * 109.46925 * 29.97987 * 22 21 20 42 42 H 1.08999 * 109.47208 * 149.97945 * 22 21 20 43 43 H 1.08001 * 120.00212 * 180.02562 * 23 21 20 44 44 H 1.09001 * 109.46723 * 93.15047 * 25 24 18 45 45 H 1.08996 * 109.47478 * 213.14923 * 25 24 18 46 46 H 1.09001 * 109.47131 * 333.15305 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1978 3.5518 1.2636 7 6 5.5366 3.2370 1.8797 8 1 6.2473 2.6256 1.3437 9 6 5.8540 3.7296 3.1278 10 7 7.0226 3.4552 3.6652 11 14 4.6249 4.7877 4.0546 12 1 3.7568 3.9206 4.8911 13 1 5.3533 5.7456 4.9248 14 1 3.7874 5.5383 3.0848 15 16 4.4528 3.5618 -1.4289 16 8 3.6274 2.9743 -2.4253 17 8 4.4791 4.9579 -1.1655 18 6 6.1077 3.0973 -1.8164 19 6 6.7013 2.0382 -1.1552 20 6 7.9977 1.6705 -1.4629 21 6 8.7046 2.3687 -2.4243 22 6 10.1197 1.9712 -2.7562 23 6 8.1131 3.4312 -3.0814 24 6 6.8144 3.7953 -2.7775 25 6 6.1693 4.9534 -3.4944 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 4.1274 4.6231 1.0752 36 1 3.4036 3.2501 1.9464 37 1 7.2460 3.8021 4.5431 38 1 6.1508 1.4958 -0.4007 39 1 8.4597 0.8400 -0.9498 40 1 10.8107 2.5168 -2.1135 41 1 10.2433 0.9001 -2.5958 42 1 10.3288 2.2089 -3.7992 43 1 8.6651 3.9764 -3.8327 44 1 6.4095 5.8813 -2.9754 45 1 6.5434 5.0017 -4.5170 46 1 5.0882 4.8148 -3.5092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259098799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:57 Heat of formation + Delta-G solvation = -69.027799 kcal Electronic energy + Delta-G solvation = -26869.322553 eV Core-core repulsion = 23271.250331 eV Total energy + Delta-G solvation = -3598.072222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.26142 -36.90434 -36.53896 -35.37196 -34.16160 -33.51747 -32.39928 -31.85923 -29.17777 -27.40777 -27.04691 -26.65148 -23.33051 -22.29137 -21.85201 -20.85094 -20.80561 -18.39776 -17.34882 -17.00461 -16.65186 -15.70516 -15.42149 -14.91135 -14.84845 -14.44409 -14.24011 -14.00490 -13.77009 -13.62077 -13.18962 -13.12601 -12.92378 -12.59680 -12.50491 -12.39795 -12.13951 -12.09761 -11.80786 -11.63880 -11.57496 -11.49364 -11.40251 -11.33443 -11.05141 -10.96053 -10.81691 -10.66607 -10.50645 -10.32018 -10.12659 -10.07005 -9.57572 -8.78064 -8.64702 -8.50909 -8.15592 -6.15723 -4.16317 1.01386 1.16152 1.58568 3.24456 3.32519 3.38129 3.45978 3.73591 4.18568 4.35427 4.74109 4.91882 4.96168 5.03126 5.13352 5.18159 5.25383 5.29335 5.30806 5.31886 5.38829 5.51552 5.57453 5.67334 5.76818 5.79802 5.82493 5.87805 5.90365 5.93168 6.00305 6.12371 6.15860 6.25069 6.29850 6.31143 6.41721 6.48705 6.56116 6.62824 6.66648 6.83048 7.10902 7.14495 7.33626 7.52480 8.39170 8.85897 9.44712 10.96621 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008682 B = 0.006129 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.223741 B = 4567.709509 C = 6145.518485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.142 4.142 4 C 0.126 3.874 5 N -0.979 5.979 6 C 0.214 3.786 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.893 5.893 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.261 1.261 15 S 2.693 3.307 16 O -0.974 6.974 17 O -0.957 6.957 18 C -0.667 4.667 19 C -0.003 4.003 20 C -0.144 4.144 21 C -0.039 4.039 22 C -0.118 4.118 23 C -0.147 4.147 24 C 0.013 3.987 25 C -0.138 4.138 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.265 0.735 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 -5.053 -11.378 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.000 4.000 5 N -0.817 5.817 6 C 0.091 3.909 7 C -0.584 4.584 8 H 0.101 0.899 9 C -0.126 4.126 10 N -0.531 5.531 11 Si 0.694 3.306 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.185 1.185 15 S 2.783 3.217 16 O -0.965 6.965 17 O -0.948 6.948 18 C -0.752 4.752 19 C -0.022 4.022 20 C -0.162 4.162 21 C -0.039 4.039 22 C -0.175 4.175 23 C -0.166 4.166 24 C 0.012 3.988 25 C -0.194 4.194 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.159 0.841 39 H 0.146 0.854 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.144 0.856 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.237 -4.470 -11.694 12.717 hybrid contribution 0.339 0.196 0.973 1.049 sum -1.898 -4.275 -10.720 11.696 Atomic orbital electron populations 1.21760 0.96141 1.01132 1.01804 1.21454 0.95670 0.96849 1.02038 1.22087 0.96162 0.96902 1.02938 1.21241 0.93588 0.82311 1.02855 1.57153 1.78360 1.23301 1.22927 1.19651 0.98058 0.92611 0.80596 1.21500 1.00065 1.33934 1.02918 0.89859 1.24826 0.95143 0.95480 0.97122 1.69889 1.21118 1.45098 1.16997 0.86968 0.81935 0.81164 0.80539 1.19979 1.20954 1.18488 1.01937 0.73754 0.73623 0.72390 1.93551 1.65522 1.79039 1.58341 1.93556 1.86941 1.29607 1.84653 1.30868 1.26887 1.08360 1.09116 1.20980 0.95094 0.92391 0.93721 1.21097 0.94956 1.01467 0.98726 1.20103 0.95745 0.93959 0.94116 1.20874 0.92613 1.02047 1.01938 1.20856 0.94751 0.98657 1.02331 1.19352 0.93836 0.93408 0.92232 1.21151 1.00103 0.97337 1.00846 0.92812 0.92816 0.93089 0.91965 0.91792 0.91324 0.91353 0.91438 0.89424 0.93225 0.94536 0.92517 0.84092 0.85428 0.90568 0.91227 0.91441 0.85608 0.88640 0.90093 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.12 -1.48 5.93 -26.73 -0.16 -1.64 16 3 C -0.14 -2.11 5.54 -26.73 -0.15 -2.26 16 4 C 0.13 2.09 4.32 -4.04 -0.02 2.07 16 5 N -0.98 -19.54 2.01 -115.67 -0.23 -19.77 16 6 C 0.21 4.92 4.48 -5.19 -0.02 4.90 16 7 C -0.55 -14.35 9.94 -34.44 -0.34 -14.70 16 8 H 0.08 2.27 6.21 -52.49 -0.33 1.95 16 9 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 11 Si 0.87 20.68 27.37 -169.99 -4.65 16.02 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.26 -6.06 6.69 56.52 0.38 -5.68 16 15 S 2.69 54.76 4.20 -107.50 -0.45 54.31 16 16 O -0.97 -19.90 16.87 -57.17 -0.96 -20.86 16 17 O -0.96 -21.75 15.12 -57.17 -0.86 -22.62 16 18 C -0.67 -12.84 5.83 -39.58 -0.23 -13.07 16 19 C 0.00 -0.06 8.69 -39.58 -0.34 -0.40 16 20 C -0.14 -2.34 9.70 -39.58 -0.38 -2.72 16 21 C -0.04 -0.57 5.88 -104.62 -0.62 -1.19 16 22 C -0.12 -1.26 10.01 36.00 0.36 -0.90 16 23 C -0.15 -2.21 9.37 -39.58 -0.37 -2.58 16 24 C 0.01 0.23 5.88 -104.62 -0.61 -0.38 16 25 C -0.14 -2.09 8.92 36.01 0.32 -1.77 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.07 1.07 7.99 -51.93 -0.41 0.65 16 33 H 0.07 1.01 7.70 -51.93 -0.40 0.61 16 34 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 35 H 0.05 1.21 6.28 -51.93 -0.33 0.88 16 36 H 0.04 0.80 7.27 -51.93 -0.38 0.42 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.14 2.53 5.51 -52.49 -0.29 2.24 16 39 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 42 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 43 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 44 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.08 0.93 8.11 -51.93 -0.42 0.50 16 46 H 0.06 0.96 6.20 -51.93 -0.32 0.63 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -32.27 379.40 -10.50 -42.76 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.52 Total: 3.62 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: -2.30 Total: -33.86 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.54 Total: -45.08 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.83 Total: -43.48 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.65 Total: 16.02 kcal Atomic # 16 Polarization: 54.76 SS G_CDS: -0.45 Total: 54.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.27 -10.50 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259098799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.265 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds