Wall clock time and date at job start Tue Mar 31 2020 15:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47502 * 2 1 4 4 C 1.52993 * 109.47218 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47146 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99794 * 84.99846 * 5 4 3 7 7 C 1.50701 * 109.47136 * 85.25127 * 6 5 4 8 8 H 1.07996 * 119.99798 * 4.88908 * 7 6 5 9 9 C 1.37873 * 120.00013 * 184.88964 * 7 6 5 10 10 N 1.31517 * 119.99707 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 120.00142 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47038 * 90.00058 * 11 9 7 13 13 H 1.48502 * 109.46999 * 210.00086 * 11 9 7 14 14 H 1.48503 * 109.46913 * 330.00089 * 11 9 7 15 15 S 1.65599 * 120.00181 * 265.00534 * 5 4 3 16 16 O 1.42106 * 106.40293 * 29.31461 * 15 5 4 17 17 O 1.42094 * 106.40571 * 162.24081 * 15 5 4 18 18 C 1.76198 * 107.21398 * 275.78040 * 15 5 4 19 19 C 1.38257 * 120.00207 * 14.75489 * 18 15 5 20 20 C 1.38216 * 120.00133 * 179.74553 * 19 18 15 21 21 C 1.38261 * 119.99957 * 0.52604 * 20 19 18 22 22 C 1.50692 * 120.00243 * 179.76837 * 21 20 19 23 23 C 1.38218 * 119.99827 * 359.75158 * 21 20 19 24 24 C 1.38216 * 120.00157 * 195.02806 * 18 15 5 25 25 C 1.50705 * 119.99725 * 359.97438 * 24 18 15 26 26 H 1.09002 * 109.46770 * 300.00261 * 1 2 3 27 27 H 1.08999 * 109.46887 * 59.99784 * 1 2 3 28 28 H 1.08997 * 109.47222 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47649 * 239.99871 * 2 1 3 30 30 H 1.09005 * 109.46825 * 119.99765 * 2 1 3 31 31 H 1.09007 * 109.46836 * 59.99558 * 3 2 1 32 32 H 1.08994 * 109.46823 * 300.00233 * 3 2 1 33 33 H 1.08994 * 109.47266 * 60.00323 * 4 3 2 34 34 H 1.08994 * 109.47540 * 299.99949 * 4 3 2 35 35 H 1.08999 * 109.46924 * 205.25013 * 6 5 4 36 36 H 1.09002 * 109.47545 * 325.24897 * 6 5 4 37 37 H 0.97000 * 119.99573 * 179.97438 * 10 9 7 38 38 H 1.08000 * 119.99832 * 359.97438 * 19 18 15 39 39 H 1.07998 * 120.00367 * 180.30090 * 20 19 18 40 40 H 1.09003 * 109.47452 * 269.98372 * 22 21 20 41 41 H 1.09002 * 109.46925 * 29.97987 * 22 21 20 42 42 H 1.08999 * 109.47208 * 149.97945 * 22 21 20 43 43 H 1.08001 * 120.00212 * 180.02562 * 23 21 20 44 44 H 1.09001 * 109.46723 * 93.15047 * 25 24 18 45 45 H 1.08996 * 109.47478 * 213.14923 * 25 24 18 46 46 H 1.09001 * 109.47131 * 333.15305 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1978 3.5518 1.2636 7 6 5.5366 3.2370 1.8797 8 1 6.2473 2.6256 1.3437 9 6 5.8540 3.7296 3.1278 10 7 7.0226 3.4552 3.6652 11 14 4.6249 4.7877 4.0546 12 1 3.7568 3.9206 4.8911 13 1 5.3533 5.7456 4.9248 14 1 3.7874 5.5383 3.0848 15 16 4.4528 3.5618 -1.4289 16 8 3.6274 2.9743 -2.4253 17 8 4.4791 4.9579 -1.1655 18 6 6.1077 3.0973 -1.8164 19 6 6.7013 2.0382 -1.1552 20 6 7.9977 1.6705 -1.4629 21 6 8.7046 2.3687 -2.4243 22 6 10.1197 1.9712 -2.7562 23 6 8.1131 3.4312 -3.0814 24 6 6.8144 3.7953 -2.7775 25 6 6.1693 4.9534 -3.4944 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 4.1274 4.6231 1.0752 36 1 3.4036 3.2501 1.9464 37 1 7.2460 3.8021 4.5431 38 1 6.1508 1.4958 -0.4007 39 1 8.4597 0.8400 -0.9498 40 1 10.8107 2.5168 -2.1135 41 1 10.2433 0.9001 -2.5958 42 1 10.3288 2.2089 -3.7992 43 1 8.6651 3.9764 -3.8327 44 1 6.4095 5.8813 -2.9754 45 1 6.5434 5.0017 -4.5170 46 1 5.0882 4.8148 -3.5092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259098799.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:56 Heat of formation + Delta-G solvation = -87.975293 kcal Electronic energy + Delta-G solvation = -26870.144178 eV Core-core repulsion = 23271.250331 eV Total energy + Delta-G solvation = -3598.893847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.49483 -38.40226 -38.16160 -37.01560 -35.51853 -34.70286 -34.29169 -33.11069 -30.70491 -28.60683 -28.43563 -27.91751 -24.81409 -23.64018 -23.37371 -22.12818 -21.92877 -19.92516 -19.10456 -18.66898 -18.29786 -17.33301 -16.65998 -16.30027 -16.12654 -16.03730 -15.66246 -15.36230 -15.07298 -14.83160 -14.49545 -14.36788 -14.19786 -14.13295 -13.79188 -13.69538 -13.59035 -13.19988 -13.16211 -13.09185 -13.03964 -12.98721 -12.87773 -12.75840 -12.50971 -12.34660 -12.16978 -11.96064 -11.91644 -11.78718 -11.65709 -11.49257 -11.33474 -10.74674 -10.03298 -9.81206 -9.76851 -8.27108 -6.30980 -0.54095 -0.14812 0.31364 1.35414 1.39923 1.49518 1.89524 2.35886 2.46458 2.62689 3.07631 3.55419 3.59757 3.73840 3.81883 3.84651 4.04030 4.16293 4.20276 4.26843 4.32052 4.38911 4.53242 4.58826 4.59776 4.67834 4.70702 4.80097 4.80105 4.88434 4.89212 4.97486 5.04465 5.06307 5.12132 5.13731 5.14987 5.27821 5.29496 5.32338 5.48103 5.48195 5.49620 5.52204 5.73459 5.93213 6.31455 6.74355 7.32968 8.87722 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008682 B = 0.006129 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.223741 B = 4567.709509 C = 6145.518485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.140 4.140 4 C 0.118 3.882 5 N -0.982 5.982 6 C 0.221 3.779 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.024 3.976 10 N -0.937 5.937 11 Si 0.922 3.078 12 H -0.257 1.257 13 H -0.285 1.285 14 H -0.253 1.253 15 S 2.699 3.301 16 O -0.982 6.982 17 O -0.989 6.989 18 C -0.694 4.694 19 C -0.025 4.025 20 C -0.159 4.159 21 C -0.035 4.035 22 C -0.116 4.116 23 C -0.147 4.147 24 C -0.006 4.006 25 C -0.143 4.143 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.266 0.734 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.165 0.835 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 -5.582 -12.468 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.179 4.179 4 C -0.007 4.007 5 N -0.820 5.820 6 C 0.097 3.903 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.176 4.176 10 N -0.577 5.577 11 Si 0.745 3.255 12 H -0.181 1.181 13 H -0.211 1.211 14 H -0.177 1.177 15 S 2.792 3.208 16 O -0.972 6.972 17 O -0.980 6.980 18 C -0.782 4.782 19 C -0.044 4.044 20 C -0.178 4.178 21 C -0.035 4.035 22 C -0.172 4.172 23 C -0.166 4.166 24 C -0.008 4.008 25 C -0.199 4.199 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.182 0.818 44 H 0.113 0.887 45 H 0.139 0.861 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.987 -5.013 -12.793 13.883 hybrid contribution 0.369 0.292 1.207 1.296 sum -1.618 -4.722 -11.586 12.615 Atomic orbital electron populations 1.21757 0.94962 1.02271 1.01756 1.21458 0.96688 0.94825 1.02790 1.22078 0.94713 0.98859 1.02261 1.21509 0.94881 0.80682 1.03581 1.57057 1.78858 1.24435 1.21604 1.19398 0.96771 0.92247 0.81913 1.21783 1.01046 1.32666 1.02644 0.91837 1.25597 0.96788 0.96899 0.98274 1.70012 1.23103 1.46936 1.17626 0.86092 0.80056 0.79805 0.79514 1.18129 1.21068 1.17700 1.01501 0.74211 0.72907 0.72201 1.93523 1.66428 1.78914 1.58383 1.93503 1.87681 1.31686 1.85088 1.30652 1.26298 1.10028 1.11214 1.21064 0.96378 0.92803 0.94164 1.21437 0.94382 1.02420 0.99541 1.20643 0.97488 0.92889 0.92493 1.20976 0.89627 1.03033 1.03592 1.21336 0.93900 0.98636 1.02702 1.19791 0.95081 0.93879 0.92050 1.21275 0.99142 0.96468 1.03048 0.92780 0.93002 0.91362 0.91286 0.91004 0.91621 0.92403 0.90153 0.89273 0.94600 0.92893 0.92496 0.84918 0.83735 0.89856 0.89869 0.88932 0.81760 0.88742 0.86054 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.29 16 2 C -0.12 -2.74 5.93 30.59 0.18 -2.56 16 3 C -0.14 -4.12 5.54 30.59 0.17 -3.95 16 4 C 0.12 3.95 4.32 86.38 0.37 4.32 16 5 N -0.98 -40.01 2.01 -519.86 -1.05 -41.06 16 6 C 0.22 10.29 4.48 85.63 0.38 10.68 16 7 C -0.54 -29.16 9.94 25.60 0.25 -28.91 16 8 H 0.06 3.60 6.21 -2.91 -0.02 3.58 16 9 C 0.02 1.31 5.47 84.65 0.46 1.77 16 10 N -0.94 -55.82 13.96 21.45 0.30 -55.52 16 11 Si 0.92 42.52 27.37 68.60 1.88 44.40 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 13 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 14 H -0.25 -11.28 6.69 99.48 0.67 -10.62 16 15 S 2.70 112.83 4.20 -56.49 -0.24 112.59 16 16 O -0.98 -40.98 16.87 -128.00 -2.16 -43.14 16 17 O -0.99 -46.48 15.12 -128.00 -1.94 -48.42 16 18 C -0.69 -27.21 5.83 22.27 0.13 -27.08 16 19 C -0.03 -0.95 8.69 22.27 0.19 -0.75 16 20 C -0.16 -5.09 9.70 22.27 0.22 -4.87 16 21 C -0.03 -0.95 5.88 -19.87 -0.12 -1.07 16 22 C -0.12 -2.05 10.01 71.23 0.71 -1.34 16 23 C -0.15 -4.08 9.37 22.27 0.21 -3.87 16 24 C -0.01 -0.22 5.88 -19.86 -0.12 -0.33 16 25 C -0.14 -4.22 8.92 71.24 0.64 -3.59 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.06 1.81 7.99 -2.39 -0.02 1.79 16 33 H 0.08 2.44 7.70 -2.39 -0.02 2.42 16 34 H 0.09 2.92 8.11 -2.39 -0.02 2.90 16 35 H 0.04 1.78 6.28 -2.39 -0.01 1.77 16 36 H 0.05 2.28 7.27 -2.39 -0.02 2.27 16 37 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.13 5.01 5.51 -2.91 -0.02 4.99 16 39 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 42 H 0.09 1.21 8.09 -2.39 -0.02 1.19 16 43 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 44 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.12 2.47 8.11 -2.39 -0.02 2.46 16 46 H 0.04 1.39 6.20 -2.39 -0.01 1.38 16 Total: -1.00 -71.00 379.40 2.11 -68.89 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.91 Total: 26.10 kcal Atomic # 6 Polarization: -68.24 SS G_CDS: 4.40 Total: -63.84 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -0.75 Total: -96.57 kcal Atomic # 8 Polarization: -87.47 SS G_CDS: -4.09 Total: -91.56 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.88 Total: 44.40 kcal Atomic # 16 Polarization: 112.83 SS G_CDS: -0.24 Total: 112.59 kcal Total: -71.00 2.11 -68.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259098799.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.090 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds