Wall clock time and date at job start Tue Mar 31 2020 15:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 C 1.53002 * 109.46763 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46856 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99627 * 274.99945 * 5 4 3 7 7 C 1.50707 * 109.47331 * 274.99924 * 6 5 4 8 8 H 1.08000 * 119.99700 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00481 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99599 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00369 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47129 * 89.99758 * 11 9 7 13 13 H 1.48501 * 109.47412 * 209.99778 * 11 9 7 14 14 H 1.48498 * 109.46904 * 329.99690 * 11 9 7 15 15 S 1.65602 * 120.00478 * 95.00041 * 5 4 3 16 16 O 1.42101 * 106.40272 * 156.45995 * 15 5 4 17 17 O 1.42098 * 106.39880 * 23.53862 * 15 5 4 18 18 C 1.76201 * 107.21535 * 270.00101 * 15 5 4 19 19 C 1.38256 * 120.00171 * 90.00083 * 18 15 5 20 20 C 1.38211 * 120.00062 * 180.27951 * 19 18 15 21 21 C 1.38258 * 119.99784 * 359.47854 * 20 19 18 22 22 C 1.50707 * 119.99997 * 180.23526 * 21 20 19 23 23 C 1.38212 * 120.00085 * 0.52159 * 21 20 19 24 24 C 1.50706 * 120.00275 * 179.72192 * 23 21 20 25 25 C 1.38214 * 119.99668 * 270.01716 * 18 15 5 26 26 H 1.09000 * 109.47133 * 300.00356 * 1 2 3 27 27 H 1.09004 * 109.47075 * 59.99928 * 1 2 3 28 28 H 1.09003 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47133 * 239.99644 * 2 1 3 30 30 H 1.09004 * 109.47075 * 120.00072 * 2 1 3 31 31 H 1.08997 * 109.47002 * 60.00128 * 3 2 1 32 32 H 1.08996 * 109.46883 * 299.99828 * 3 2 1 33 33 H 1.08997 * 109.47168 * 60.00338 * 4 3 2 34 34 H 1.09004 * 109.47340 * 300.00018 * 4 3 2 35 35 H 1.09000 * 109.47613 * 34.99968 * 6 5 4 36 36 H 1.09009 * 109.47151 * 155.00248 * 6 5 4 37 37 H 0.97002 * 119.99611 * 180.02562 * 10 9 7 38 38 H 1.08002 * 119.99676 * 359.97438 * 19 18 15 39 39 H 1.07998 * 120.00348 * 179.72205 * 20 19 18 40 40 H 1.09003 * 109.47135 * 270.28406 * 22 21 20 41 41 H 1.09000 * 109.46785 * 30.28531 * 22 21 20 42 42 H 1.09002 * 109.47199 * 150.28503 * 22 21 20 43 43 H 1.09004 * 109.46442 * 270.02096 * 24 23 21 44 44 H 1.09000 * 109.46849 * 30.01503 * 24 23 21 45 45 H 1.08993 * 109.47102 * 150.01800 * 24 23 21 46 46 H 1.07997 * 120.00449 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.1988 3.5513 -1.2624 7 6 5.5356 3.2316 -1.8804 8 1 6.2130 2.5544 -1.3815 9 6 5.8943 3.8044 -3.0821 10 7 5.0696 4.6295 -3.6894 11 14 7.5510 3.4076 -3.8484 12 1 7.4151 2.2252 -4.7366 13 1 8.0208 4.5714 -4.6422 14 1 8.5341 3.1107 -2.7758 15 16 4.4517 3.5622 1.4303 16 8 5.3680 4.5991 1.1071 17 8 4.7486 2.5217 2.3513 18 6 2.9947 4.3537 2.0265 19 6 2.1264 3.6691 2.8565 20 6 0.9806 4.2880 3.3195 21 6 0.7082 5.5953 2.9613 22 6 -0.5384 6.2720 3.4705 23 6 1.5762 6.2797 2.1316 24 6 1.2762 7.7027 1.7362 25 6 2.7197 5.6588 1.6641 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9287 0.8909 35 1 3.4026 3.2526 -1.9443 36 1 4.1327 4.6230 -1.0739 37 1 5.3218 5.0323 -4.5351 38 1 2.3410 2.6490 3.1390 39 1 0.3000 3.7518 3.9642 40 1 -1.3574 6.0976 2.7725 41 1 -0.8001 5.8642 4.4469 42 1 -0.3595 7.3434 3.5602 43 1 0.6851 7.7082 0.8203 44 1 0.7156 8.1908 2.5334 45 1 2.2107 8.2380 1.5688 46 1 3.3980 6.1937 1.0159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259165395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:00 Heat of formation + Delta-G solvation = -72.942942 kcal Electronic energy + Delta-G solvation = -26640.675294 eV Core-core repulsion = 23042.433299 eV Total energy + Delta-G solvation = -3598.241996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.52757 -36.78657 -36.45332 -35.15313 -34.05276 -33.52166 -32.33735 -32.19680 -28.84801 -27.79046 -26.62137 -26.47549 -23.38258 -22.31903 -22.04755 -21.30379 -20.74770 -18.20158 -17.28891 -16.70935 -16.31428 -16.02463 -15.30330 -15.22615 -14.92798 -14.41560 -14.35713 -14.16807 -13.81386 -13.54231 -13.17067 -12.93211 -12.83336 -12.74694 -12.55989 -12.31602 -12.14196 -12.07325 -11.82244 -11.70823 -11.46969 -11.37736 -11.31194 -11.14054 -11.03478 -10.93222 -10.82644 -10.66363 -10.49976 -10.27561 -10.24189 -9.93349 -9.69552 -8.98774 -8.68430 -8.42696 -8.02971 -6.04808 -4.08421 0.84073 1.15350 1.37455 3.32982 3.39386 3.40457 3.46057 3.81900 4.38788 4.47626 4.63338 4.68854 4.87755 4.90187 5.06982 5.15103 5.20430 5.29728 5.30864 5.31618 5.35023 5.36476 5.52602 5.58126 5.66827 5.70154 5.76613 5.86024 5.89276 5.91972 5.98887 6.02216 6.10782 6.20218 6.25344 6.27852 6.32334 6.34964 6.51749 6.65403 6.69017 6.95135 7.24821 7.41079 7.61891 7.92858 8.21818 8.93962 9.56615 11.03782 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.004899 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.820046 B = 5713.579825 C = 6846.745704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.121 3.879 5 N -0.980 5.980 6 C 0.257 3.743 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.063 3.937 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.272 1.272 15 S 2.683 3.317 16 O -0.943 6.943 17 O -0.977 6.977 18 C -0.672 4.672 19 C -0.025 4.025 20 C -0.143 4.143 21 C -0.043 4.043 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.118 4.118 25 C -0.011 4.011 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.263 0.737 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.308 -0.714 11.651 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.183 4.183 4 C -0.005 4.005 5 N -0.819 5.819 6 C 0.135 3.865 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.139 4.139 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.197 1.197 15 S 2.772 3.228 16 O -0.934 6.934 17 O -0.968 6.968 18 C -0.756 4.756 19 C -0.044 4.044 20 C -0.162 4.162 21 C -0.043 4.043 22 C -0.179 4.179 23 C -0.111 4.111 24 C -0.174 4.174 25 C -0.031 4.031 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.523 -0.566 11.884 17.273 hybrid contribution 0.075 0.054 -0.594 0.601 sum -12.448 -0.512 11.290 16.813 Atomic orbital electron populations 1.21759 0.96236 1.01076 1.01686 1.21460 0.95503 0.96938 1.02158 1.22141 0.96933 0.96653 1.02536 1.21268 0.92511 0.82959 1.03808 1.57404 1.81066 1.21167 1.22216 1.19085 0.97496 0.91197 0.78703 1.21488 1.01984 1.27620 1.05513 0.92061 1.24912 0.97329 0.94814 0.96876 1.69924 1.36131 1.30291 1.17192 0.86527 0.84092 0.77815 0.79225 1.20649 1.21103 1.19659 1.02238 0.74157 0.73592 0.72816 1.93597 1.58635 1.57768 1.83353 1.93485 1.83312 1.56643 1.63335 1.31446 1.24464 1.06735 1.12975 1.20833 0.92047 0.99150 0.92381 1.21059 0.98042 0.94793 1.02270 1.19998 0.95516 0.94007 0.94799 1.20954 0.94830 1.00894 1.01184 1.19870 0.95240 0.97063 0.98954 1.20875 1.02780 0.91981 1.01764 1.20899 0.95235 0.92392 0.94531 0.93055 0.92787 0.93112 0.91665 0.92019 0.92516 0.91102 0.89400 0.90361 0.94499 0.94437 0.92736 0.84669 0.85562 0.90632 0.91376 0.90790 0.90819 0.91245 0.91089 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.47 5.93 -26.73 -0.16 -1.63 16 3 C -0.14 -2.09 5.54 -26.73 -0.15 -2.24 16 4 C 0.12 2.10 5.68 -4.04 -0.02 2.07 16 5 N -0.98 -20.29 2.77 -115.66 -0.32 -20.61 16 6 C 0.26 6.34 5.10 -5.19 -0.03 6.32 16 7 C -0.53 -14.60 9.38 -34.44 -0.32 -14.92 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.90 -25.88 13.29 55.43 0.74 -25.14 16 11 Si 0.90 21.73 29.54 -169.99 -5.02 16.70 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 S 2.68 54.86 5.65 -107.50 -0.61 54.26 16 16 O -0.94 -22.68 16.25 -57.17 -0.93 -23.61 16 17 O -0.98 -20.39 15.84 -57.17 -0.91 -21.30 16 18 C -0.67 -11.52 5.97 -39.58 -0.24 -11.76 16 19 C -0.02 -0.37 8.42 -39.58 -0.33 -0.70 16 20 C -0.14 -1.78 9.70 -39.58 -0.38 -2.16 16 21 C -0.04 -0.52 5.88 -104.62 -0.62 -1.14 16 22 C -0.12 -1.03 9.60 36.01 0.35 -0.68 16 23 C -0.11 -1.51 5.88 -104.62 -0.62 -2.13 16 24 C -0.12 -1.26 9.60 36.01 0.35 -0.91 16 25 C -0.01 -0.19 9.18 -39.58 -0.36 -0.55 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.79 7.00 -51.93 -0.36 0.43 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 34 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 35 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 36 H 0.04 0.98 7.61 -51.92 -0.40 0.59 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 38 H 0.14 1.82 7.62 -52.49 -0.40 1.42 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 42 H 0.07 0.55 5.95 -51.93 -0.31 0.24 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 45 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 46 H 0.14 2.40 7.62 -52.49 -0.40 2.00 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -32.76 386.27 -11.06 -43.82 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.57 Total: 0.04 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -2.26 Total: -29.98 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.42 Total: -45.75 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.83 Total: -44.91 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 54.86 SS G_CDS: -0.61 Total: 54.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.76 -11.06 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259165395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.123 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds