Wall clock time and date at job start Tue Mar 31 2020 15:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 C 1.53002 * 109.46763 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46856 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99627 * 274.99945 * 5 4 3 7 7 C 1.50707 * 109.47331 * 274.99924 * 6 5 4 8 8 H 1.08000 * 119.99700 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00481 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99599 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00369 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47129 * 89.99758 * 11 9 7 13 13 H 1.48501 * 109.47412 * 209.99778 * 11 9 7 14 14 H 1.48498 * 109.46904 * 329.99690 * 11 9 7 15 15 S 1.65602 * 120.00478 * 95.00041 * 5 4 3 16 16 O 1.42101 * 106.40272 * 156.45995 * 15 5 4 17 17 O 1.42098 * 106.39880 * 23.53862 * 15 5 4 18 18 C 1.76201 * 107.21535 * 270.00101 * 15 5 4 19 19 C 1.38256 * 120.00171 * 90.00083 * 18 15 5 20 20 C 1.38211 * 120.00062 * 180.27951 * 19 18 15 21 21 C 1.38258 * 119.99784 * 359.47854 * 20 19 18 22 22 C 1.50707 * 119.99997 * 180.23526 * 21 20 19 23 23 C 1.38212 * 120.00085 * 0.52159 * 21 20 19 24 24 C 1.50706 * 120.00275 * 179.72192 * 23 21 20 25 25 C 1.38214 * 119.99668 * 270.01716 * 18 15 5 26 26 H 1.09000 * 109.47133 * 300.00356 * 1 2 3 27 27 H 1.09004 * 109.47075 * 59.99928 * 1 2 3 28 28 H 1.09003 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47133 * 239.99644 * 2 1 3 30 30 H 1.09004 * 109.47075 * 120.00072 * 2 1 3 31 31 H 1.08997 * 109.47002 * 60.00128 * 3 2 1 32 32 H 1.08996 * 109.46883 * 299.99828 * 3 2 1 33 33 H 1.08997 * 109.47168 * 60.00338 * 4 3 2 34 34 H 1.09004 * 109.47340 * 300.00018 * 4 3 2 35 35 H 1.09000 * 109.47613 * 34.99968 * 6 5 4 36 36 H 1.09009 * 109.47151 * 155.00248 * 6 5 4 37 37 H 0.97002 * 119.99611 * 180.02562 * 10 9 7 38 38 H 1.08002 * 119.99676 * 359.97438 * 19 18 15 39 39 H 1.07998 * 120.00348 * 179.72205 * 20 19 18 40 40 H 1.09003 * 109.47135 * 270.28406 * 22 21 20 41 41 H 1.09000 * 109.46785 * 30.28531 * 22 21 20 42 42 H 1.09002 * 109.47199 * 150.28503 * 22 21 20 43 43 H 1.09004 * 109.46442 * 270.02096 * 24 23 21 44 44 H 1.09000 * 109.46849 * 30.01503 * 24 23 21 45 45 H 1.08993 * 109.47102 * 150.01800 * 24 23 21 46 46 H 1.07997 * 120.00449 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.1988 3.5513 -1.2624 7 6 5.5356 3.2316 -1.8804 8 1 6.2130 2.5544 -1.3815 9 6 5.8943 3.8044 -3.0821 10 7 5.0696 4.6295 -3.6894 11 14 7.5510 3.4076 -3.8484 12 1 7.4151 2.2252 -4.7366 13 1 8.0208 4.5714 -4.6422 14 1 8.5341 3.1107 -2.7758 15 16 4.4517 3.5622 1.4303 16 8 5.3680 4.5991 1.1071 17 8 4.7486 2.5217 2.3513 18 6 2.9947 4.3537 2.0265 19 6 2.1264 3.6691 2.8565 20 6 0.9806 4.2880 3.3195 21 6 0.7082 5.5953 2.9613 22 6 -0.5384 6.2720 3.4705 23 6 1.5762 6.2797 2.1316 24 6 1.2762 7.7027 1.7362 25 6 2.7197 5.6588 1.6641 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9287 0.8909 35 1 3.4026 3.2526 -1.9443 36 1 4.1327 4.6230 -1.0739 37 1 5.3218 5.0323 -4.5351 38 1 2.3410 2.6490 3.1390 39 1 0.3000 3.7518 3.9642 40 1 -1.3574 6.0976 2.7725 41 1 -0.8001 5.8642 4.4469 42 1 -0.3595 7.3434 3.5602 43 1 0.6851 7.7082 0.8203 44 1 0.7156 8.1908 2.5334 45 1 2.2107 8.2380 1.5688 46 1 3.3980 6.1937 1.0159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259165395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:59 Heat of formation + Delta-G solvation = -92.309897 kcal Electronic energy + Delta-G solvation = -26641.515108 eV Core-core repulsion = 23042.433299 eV Total energy + Delta-G solvation = -3599.081810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59204 -38.39132 -38.06158 -36.88380 -35.52034 -34.54488 -34.24268 -33.20168 -30.33434 -28.71167 -28.25457 -27.58410 -25.05024 -23.71277 -23.29599 -22.41439 -21.88842 -19.76555 -18.87375 -18.38222 -18.21792 -17.40441 -16.75271 -16.35778 -16.27301 -16.04019 -15.39210 -15.28623 -15.15161 -14.93913 -14.33859 -14.24249 -14.17414 -13.68621 -13.64847 -13.61118 -13.52148 -13.16807 -13.11460 -13.07338 -13.05616 -12.91832 -12.84852 -12.64434 -12.52365 -12.33911 -12.21351 -12.03725 -11.85874 -11.83494 -11.62497 -11.56463 -11.34323 -10.59217 -10.07378 -9.80601 -9.71320 -8.20338 -6.32053 -0.57942 -0.18127 0.27460 1.38431 1.40855 1.51595 2.02793 2.40910 2.50167 2.84040 3.10549 3.30888 3.74254 3.82876 3.88523 3.90705 4.06069 4.19005 4.23601 4.23976 4.32783 4.47901 4.63591 4.66059 4.70981 4.72200 4.76678 4.82546 4.90016 4.91053 4.98901 5.06271 5.09861 5.13152 5.15787 5.17793 5.20090 5.31177 5.33600 5.36966 5.51752 5.53062 5.54429 5.70384 5.91823 5.92054 6.10017 6.75645 7.36509 8.87435 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.004899 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.820046 B = 5713.579825 C = 6846.745704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.135 4.135 4 C 0.114 3.886 5 N -0.986 5.986 6 C 0.275 3.725 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.014 3.986 10 N -0.924 5.924 11 Si 0.956 3.044 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.275 1.275 15 S 2.686 3.314 16 O -0.993 6.993 17 O -0.988 6.988 18 C -0.681 4.681 19 C -0.034 4.034 20 C -0.136 4.136 21 C -0.034 4.034 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.041 4.041 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.028 0.972 36 H 0.014 0.986 37 H 0.267 0.733 38 H 0.146 0.854 39 H 0.167 0.833 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.063 0.937 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.939 -1.168 13.242 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.174 4.174 4 C -0.011 4.011 5 N -0.824 5.824 6 C 0.152 3.848 7 C -0.587 4.587 8 H 0.071 0.929 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.781 3.219 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.200 1.200 15 S 2.781 3.219 16 O -0.984 6.984 17 O -0.978 6.978 18 C -0.771 4.771 19 C -0.053 4.053 20 C -0.154 4.154 21 C -0.035 4.035 22 C -0.177 4.177 23 C -0.117 4.117 24 C -0.175 4.175 25 C -0.060 4.060 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.115 -1.069 13.457 20.266 hybrid contribution 0.779 0.244 -0.979 1.275 sum -14.337 -0.826 12.477 19.024 Atomic orbital electron populations 1.21737 0.94741 1.02230 1.01778 1.21466 0.96770 0.94824 1.02774 1.22060 0.94541 0.98678 1.02149 1.21506 0.94659 0.81167 1.03816 1.57256 1.81746 1.22461 1.20950 1.18595 0.95980 0.90247 0.80003 1.21812 1.03132 1.27684 1.06062 0.92934 1.25721 1.00841 0.94635 0.97355 1.70017 1.37772 1.30955 1.17626 0.85589 0.79660 0.78290 0.78399 1.18976 1.20318 1.19951 1.01644 0.74845 0.72931 0.72493 1.93525 1.61735 1.59057 1.84055 1.93452 1.84246 1.57021 1.63105 1.30700 1.23757 1.07174 1.15423 1.21078 0.92529 0.99715 0.92023 1.21523 0.97265 0.95019 1.01603 1.20541 0.96160 0.93918 0.92842 1.21080 0.92880 1.01380 1.02386 1.20215 0.94247 0.98467 0.98777 1.20967 1.03042 0.90337 1.03133 1.20903 0.96752 0.92590 0.95778 0.92311 0.93376 0.91433 0.91778 0.90748 0.91686 0.92685 0.90343 0.89312 0.95353 0.96780 0.92376 0.83607 0.81587 0.89118 0.89232 0.89517 0.90139 0.88256 0.91802 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.12 -2.72 5.93 30.59 0.18 -2.54 16 3 C -0.13 -3.94 5.54 30.59 0.17 -3.77 16 4 C 0.11 4.07 5.68 86.38 0.49 4.56 16 5 N -0.99 -43.09 2.77 -519.82 -1.44 -44.53 16 6 C 0.28 14.44 5.10 85.63 0.44 14.88 16 7 C -0.55 -31.74 9.38 25.60 0.24 -31.50 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.01 0.80 5.46 84.65 0.46 1.27 16 10 N -0.92 -54.89 13.29 21.45 0.28 -54.60 16 11 Si 0.96 45.35 29.54 68.60 2.03 47.37 16 12 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 15 S 2.69 115.88 5.65 -56.49 -0.32 115.57 16 16 O -0.99 -51.45 16.25 -128.00 -2.08 -53.53 16 17 O -0.99 -42.44 15.84 -128.00 -2.03 -44.47 16 18 C -0.68 -23.96 5.97 22.27 0.13 -23.83 16 19 C -0.03 -0.96 8.42 22.27 0.19 -0.77 16 20 C -0.14 -2.89 9.70 22.27 0.22 -2.68 16 21 C -0.03 -0.72 5.88 -19.86 -0.12 -0.83 16 22 C -0.12 -1.42 9.60 71.24 0.68 -0.74 16 23 C -0.12 -3.04 5.88 -19.86 -0.12 -3.16 16 24 C -0.12 -2.35 9.60 71.24 0.68 -1.67 16 25 C -0.04 -1.40 9.18 22.27 0.20 -1.19 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.77 7.00 -2.39 -0.02 1.75 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16 34 H 0.09 2.95 6.91 -2.39 -0.02 2.94 16 35 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 36 H 0.01 0.80 7.61 -2.38 -0.02 0.78 16 37 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.15 3.68 7.62 -2.91 -0.02 3.66 16 39 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 42 H 0.09 0.84 5.95 -2.39 -0.01 0.83 16 43 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.10 1.35 5.95 -2.39 -0.01 1.33 16 45 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 46 H 0.12 4.47 7.62 -2.91 -0.02 4.45 16 Total: -1.00 -74.18 386.27 1.96 -72.22 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.95 Total: 16.01 kcal Atomic # 6 Polarization: -58.61 SS G_CDS: 4.57 Total: -54.04 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -1.15 Total: -99.14 kcal Atomic # 8 Polarization: -93.89 SS G_CDS: -4.11 Total: -97.99 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 115.88 SS G_CDS: -0.32 Total: 115.57 kcal Total: -74.18 1.96 -72.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259165395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.091 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds