Wall clock time and date at job start Tue Mar 31 2020 15:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47396 * 2 1 4 4 C 1.52995 * 109.47421 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47422 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00262 * 275.00440 * 5 4 3 7 7 C 1.50705 * 109.46946 * 274.99635 * 6 5 4 8 8 H 1.07999 * 119.99621 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00195 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99928 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99963 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47212 * 60.00107 * 11 9 7 13 13 H 1.48507 * 109.46942 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47055 * 299.99791 * 11 9 7 15 15 S 1.65603 * 120.00001 * 94.99900 * 5 4 3 16 16 O 1.42098 * 104.27848 * 333.93096 * 15 5 4 17 17 O 1.42099 * 104.27915 * 206.07679 * 15 5 4 18 18 C 1.81401 * 104.45019 * 90.00208 * 15 5 4 19 19 C 1.50693 * 109.47312 * 180.02562 * 18 15 5 20 20 C 1.38233 * 120.00207 * 89.99480 * 19 18 15 21 21 C 1.38234 * 120.00037 * 179.72405 * 20 19 18 22 22 C 1.38234 * 120.00240 * 0.26327 * 21 20 19 23 23 C 1.50700 * 120.00260 * 179.97438 * 22 21 20 24 24 C 1.38238 * 119.99693 * 0.02562 * 22 21 20 25 25 C 1.38234 * 120.00047 * 359.95697 * 24 22 21 26 26 H 1.09002 * 109.47639 * 59.99206 * 1 2 3 27 27 H 1.08994 * 109.47598 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46399 * 299.99735 * 1 2 3 29 29 H 1.09004 * 109.46670 * 240.00710 * 2 1 3 30 30 H 1.08996 * 109.47464 * 120.00121 * 2 1 3 31 31 H 1.08996 * 109.46775 * 60.00335 * 3 2 1 32 32 H 1.09002 * 109.47375 * 300.00956 * 3 2 1 33 33 H 1.08996 * 109.47193 * 60.00199 * 4 3 2 34 34 H 1.08999 * 109.46863 * 300.00381 * 4 3 2 35 35 H 1.09001 * 109.47137 * 34.99146 * 6 5 4 36 36 H 1.09001 * 109.47426 * 154.99689 * 6 5 4 37 37 H 0.97001 * 119.99931 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.46926 * 60.00223 * 18 15 5 39 39 H 1.09001 * 109.46748 * 300.00027 * 18 15 5 40 40 H 1.08002 * 120.00157 * 0.02562 * 20 19 18 41 41 H 1.07999 * 120.00009 * 180.28389 * 21 20 19 42 42 H 1.09000 * 109.46827 * 89.99810 * 23 22 21 43 43 H 1.08999 * 109.47240 * 210.00239 * 23 22 21 44 44 H 1.08999 * 109.46861 * 329.99859 * 23 22 21 45 45 H 1.08001 * 119.99658 * 179.97438 * 24 22 21 46 46 H 1.07999 * 119.99990 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1977 3.5519 -1.2635 7 6 5.5340 3.2324 -1.8827 8 1 6.2118 2.5550 -1.3846 9 6 5.8913 3.8049 -3.0850 10 7 5.0657 4.6295 -3.6918 11 14 7.5473 3.4083 -3.8528 12 1 7.6368 1.9485 -4.1100 13 1 7.6882 4.1457 -5.1342 14 1 8.6332 3.8151 -2.9251 15 16 4.4528 3.5618 1.4290 16 8 3.6619 2.8906 2.4001 17 8 4.2739 4.9472 1.1689 18 6 6.2104 3.1803 1.6654 19 6 6.6918 3.8051 2.9495 20 6 6.6163 3.0962 4.1338 21 6 7.0631 3.6672 5.3108 22 6 7.5804 4.9491 5.3043 23 6 8.0670 5.5718 6.5875 24 6 7.6503 5.6602 4.1209 25 6 7.2039 5.0891 2.9439 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8908 34 1 3.9336 0.9285 0.8891 35 1 3.4009 3.2534 -1.9448 36 1 4.1317 4.6234 -1.0745 37 1 5.3169 5.0320 -4.5379 38 1 6.7845 3.5794 0.8292 39 1 6.3441 2.0996 1.7151 40 1 6.2127 2.0944 4.1389 41 1 7.0084 3.1117 6.2353 42 1 9.1236 5.3420 6.7250 43 1 7.9332 6.6525 6.5405 44 1 7.4960 5.1712 7.4251 45 1 8.0541 6.6619 4.1160 46 1 7.2589 5.6445 2.0194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259261816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:07 Heat of formation + Delta-G solvation = -73.741129 kcal Electronic energy + Delta-G solvation = -26003.701887 eV Core-core repulsion = 22405.425279 eV Total energy + Delta-G solvation = -3598.276608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.42457 -36.72528 -36.40382 -35.28837 -34.02988 -33.96246 -32.41583 -30.93048 -29.48887 -28.80847 -26.52974 -25.13864 -23.38344 -22.73318 -22.09090 -20.87236 -20.71666 -18.18355 -17.02596 -16.59676 -16.23323 -15.87717 -15.51624 -15.32664 -15.05199 -14.87396 -14.54724 -13.89239 -13.79297 -13.58489 -13.41393 -13.04971 -12.74286 -12.70042 -12.56615 -12.26769 -12.21541 -12.05177 -11.87633 -11.47982 -11.42514 -11.33286 -11.25968 -11.17789 -10.98406 -10.94582 -10.78364 -10.71147 -10.58582 -10.40985 -10.23242 -9.95492 -9.77641 -8.92656 -8.53659 -8.49548 -7.96972 -6.14504 -4.22687 0.71348 1.40678 1.43403 3.23152 3.28565 3.29406 3.37346 3.72905 4.30066 4.36517 4.60915 4.67795 4.84302 4.87853 5.02760 5.13589 5.19707 5.22573 5.22915 5.39336 5.43847 5.45547 5.47165 5.49980 5.65333 5.71362 5.82525 5.93595 5.96968 5.99777 6.07114 6.07965 6.11454 6.25007 6.37799 6.38582 6.40853 6.55582 6.57540 6.73123 6.75224 6.98471 7.34915 7.40734 7.63822 7.81857 8.10869 8.81745 9.43979 10.93108 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008980 B = 0.004842 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.344978 B = 5781.056073 C = 8175.306974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.133 3.867 5 N -0.984 5.984 6 C 0.243 3.757 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.886 5.886 11 Si 0.893 3.107 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.276 1.276 15 S 2.609 3.391 16 O -0.971 6.971 17 O -0.950 6.950 18 C -0.593 4.593 19 C -0.086 4.086 20 C -0.106 4.106 21 C -0.121 4.121 22 C -0.089 4.089 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.101 4.101 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.266 0.734 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.126 0.874 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 -4.527 14.314 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.179 4.179 4 C 0.006 3.994 5 N -0.822 5.822 6 C 0.121 3.879 7 C -0.589 4.589 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.524 5.524 11 Si 0.720 3.280 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.201 1.201 15 S 2.701 3.299 16 O -0.961 6.961 17 O -0.941 6.941 18 C -0.719 4.719 19 C -0.088 4.088 20 C -0.125 4.125 21 C -0.139 4.139 22 C -0.089 4.089 23 C -0.170 4.170 24 C -0.137 4.137 25 C -0.120 4.120 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.144 0.856 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.339 -3.906 14.637 15.209 hybrid contribution 1.635 -0.596 -0.991 2.003 sum 2.974 -4.503 13.646 14.674 Atomic orbital electron populations 1.21761 0.96212 1.01006 1.01853 1.21451 0.95632 0.97065 1.01775 1.22059 0.96411 0.96545 1.02900 1.21081 0.93437 0.82754 1.02085 1.57451 1.77908 1.23073 1.23759 1.19239 0.97193 0.92603 0.78861 1.21550 1.02443 1.28358 1.06515 0.92096 1.24945 0.97211 0.94717 0.96823 1.69923 1.35934 1.29490 1.17041 0.86654 0.84051 0.78560 0.78740 1.20131 1.21070 1.20115 1.05025 0.76788 0.74655 0.73399 1.93516 1.65239 1.76182 1.61170 1.93557 1.84682 1.31742 1.84098 1.29842 1.28702 1.10183 1.03124 1.19123 1.01832 0.94997 0.92816 1.21146 0.99179 1.00158 0.91995 1.20989 0.99832 0.95094 0.97985 1.19985 0.98826 0.94610 0.95526 1.20788 1.01163 1.00767 0.94263 1.21046 1.00643 1.00055 0.91928 1.21280 0.97038 0.94496 0.99200 0.92750 0.93192 0.92857 0.91957 0.92159 0.91545 0.91316 0.90135 0.91891 0.94117 0.92782 0.92437 0.83093 0.84890 0.85372 0.85750 0.91221 0.91458 0.91531 0.85597 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.14 -2.26 5.54 -26.73 -0.15 -2.41 16 4 C 0.13 2.29 5.26 -4.05 -0.02 2.27 16 5 N -0.98 -20.08 2.70 -115.67 -0.31 -20.39 16 6 C 0.24 5.95 5.41 -5.19 -0.03 5.93 16 7 C -0.55 -14.09 9.38 -34.44 -0.32 -14.41 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 11 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 15 S 2.61 51.59 5.35 -107.50 -0.58 51.01 16 16 O -0.97 -19.58 16.75 -57.54 -0.96 -20.55 16 17 O -0.95 -22.11 16.53 -57.54 -0.95 -23.07 16 18 C -0.59 -9.76 6.30 36.00 0.23 -9.54 16 19 C -0.09 -1.36 5.14 -104.63 -0.54 -1.90 16 20 C -0.11 -1.49 9.70 -39.58 -0.38 -1.87 16 21 C -0.12 -1.48 9.70 -39.58 -0.38 -1.87 16 22 C -0.09 -1.06 5.88 -104.62 -0.62 -1.67 16 23 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 24 C -0.12 -1.54 9.70 -39.58 -0.38 -1.93 16 25 C -0.10 -1.55 9.70 -39.58 -0.38 -1.94 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.14 7.90 -51.93 -0.41 0.73 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 34 H 0.06 0.95 7.61 -51.93 -0.39 0.55 16 35 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.05 1.46 6.82 -51.93 -0.35 1.11 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.15 2.56 8.09 -51.92 -0.42 2.14 16 39 H 0.13 1.84 8.08 -51.92 -0.42 1.42 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 44 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 45 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -31.60 394.75 -11.52 -43.13 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.88 Total: 4.23 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: -2.51 Total: -31.38 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.42 Total: -44.67 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.91 Total: -43.61 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 51.59 SS G_CDS: -0.58 Total: 51.01 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.60 -11.52 -43.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259261816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.612 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds