Wall clock time and date at job start Tue Mar 31 2020 15:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47396 * 2 1 4 4 C 1.52995 * 109.47421 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47422 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00262 * 275.00440 * 5 4 3 7 7 C 1.50705 * 109.46946 * 274.99635 * 6 5 4 8 8 H 1.07999 * 119.99621 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00195 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99928 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99963 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47212 * 60.00107 * 11 9 7 13 13 H 1.48507 * 109.46942 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47055 * 299.99791 * 11 9 7 15 15 S 1.65603 * 120.00001 * 94.99900 * 5 4 3 16 16 O 1.42098 * 104.27848 * 333.93096 * 15 5 4 17 17 O 1.42099 * 104.27915 * 206.07679 * 15 5 4 18 18 C 1.81401 * 104.45019 * 90.00208 * 15 5 4 19 19 C 1.50693 * 109.47312 * 180.02562 * 18 15 5 20 20 C 1.38233 * 120.00207 * 89.99480 * 19 18 15 21 21 C 1.38234 * 120.00037 * 179.72405 * 20 19 18 22 22 C 1.38234 * 120.00240 * 0.26327 * 21 20 19 23 23 C 1.50700 * 120.00260 * 179.97438 * 22 21 20 24 24 C 1.38238 * 119.99693 * 0.02562 * 22 21 20 25 25 C 1.38234 * 120.00047 * 359.95697 * 24 22 21 26 26 H 1.09002 * 109.47639 * 59.99206 * 1 2 3 27 27 H 1.08994 * 109.47598 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46399 * 299.99735 * 1 2 3 29 29 H 1.09004 * 109.46670 * 240.00710 * 2 1 3 30 30 H 1.08996 * 109.47464 * 120.00121 * 2 1 3 31 31 H 1.08996 * 109.46775 * 60.00335 * 3 2 1 32 32 H 1.09002 * 109.47375 * 300.00956 * 3 2 1 33 33 H 1.08996 * 109.47193 * 60.00199 * 4 3 2 34 34 H 1.08999 * 109.46863 * 300.00381 * 4 3 2 35 35 H 1.09001 * 109.47137 * 34.99146 * 6 5 4 36 36 H 1.09001 * 109.47426 * 154.99689 * 6 5 4 37 37 H 0.97001 * 119.99931 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.46926 * 60.00223 * 18 15 5 39 39 H 1.09001 * 109.46748 * 300.00027 * 18 15 5 40 40 H 1.08002 * 120.00157 * 0.02562 * 20 19 18 41 41 H 1.07999 * 120.00009 * 180.28389 * 21 20 19 42 42 H 1.09000 * 109.46827 * 89.99810 * 23 22 21 43 43 H 1.08999 * 109.47240 * 210.00239 * 23 22 21 44 44 H 1.08999 * 109.46861 * 329.99859 * 23 22 21 45 45 H 1.08001 * 119.99658 * 179.97438 * 24 22 21 46 46 H 1.07999 * 119.99990 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1977 3.5519 -1.2635 7 6 5.5340 3.2324 -1.8827 8 1 6.2118 2.5550 -1.3846 9 6 5.8913 3.8049 -3.0850 10 7 5.0657 4.6295 -3.6918 11 14 7.5473 3.4083 -3.8528 12 1 7.6368 1.9485 -4.1100 13 1 7.6882 4.1457 -5.1342 14 1 8.6332 3.8151 -2.9251 15 16 4.4528 3.5618 1.4290 16 8 3.6619 2.8906 2.4001 17 8 4.2739 4.9472 1.1689 18 6 6.2104 3.1803 1.6654 19 6 6.6918 3.8051 2.9495 20 6 6.6163 3.0962 4.1338 21 6 7.0631 3.6672 5.3108 22 6 7.5804 4.9491 5.3043 23 6 8.0670 5.5718 6.5875 24 6 7.6503 5.6602 4.1209 25 6 7.2039 5.0891 2.9439 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8908 34 1 3.9336 0.9285 0.8891 35 1 3.4009 3.2534 -1.9448 36 1 4.1317 4.6234 -1.0745 37 1 5.3169 5.0320 -4.5379 38 1 6.7845 3.5794 0.8292 39 1 6.3441 2.0996 1.7151 40 1 6.2127 2.0944 4.1389 41 1 7.0084 3.1117 6.2353 42 1 9.1236 5.3420 6.7250 43 1 7.9332 6.6525 6.5405 44 1 7.4960 5.1712 7.4251 45 1 8.0541 6.6619 4.1160 46 1 7.2589 5.6445 2.0194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259261816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:07 Heat of formation + Delta-G solvation = -91.562815 kcal Electronic energy + Delta-G solvation = -26004.474693 eV Core-core repulsion = 22405.425279 eV Total energy + Delta-G solvation = -3599.049414 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.43849 -38.27185 -38.02976 -36.94440 -35.51240 -34.99509 -34.23214 -31.94302 -30.52845 -30.29520 -28.25671 -26.15871 -25.01178 -23.75372 -23.63950 -21.93783 -21.90798 -19.78533 -18.69540 -18.41366 -17.68620 -17.37638 -16.77930 -16.60244 -16.29839 -16.14012 -15.99870 -15.34102 -14.98494 -14.62628 -14.40846 -14.32285 -14.20196 -13.92992 -13.82907 -13.65162 -13.54640 -13.23139 -13.16879 -13.01396 -12.93205 -12.88626 -12.87311 -12.53042 -12.30321 -12.25066 -12.17648 -11.97217 -11.92391 -11.85445 -11.73693 -11.58293 -11.32586 -10.58230 -9.95702 -9.82943 -9.40488 -8.17796 -6.33566 -0.77784 0.33263 0.37982 1.43254 1.44708 1.52286 1.78175 2.41061 2.67668 2.89049 3.13329 3.17997 3.41432 3.75490 3.91145 4.01824 4.03811 4.05313 4.09476 4.23721 4.32955 4.45105 4.50196 4.53948 4.66000 4.72364 4.80731 4.82731 4.86259 4.90210 4.97985 5.08974 5.10593 5.13150 5.24796 5.26293 5.34246 5.37342 5.37965 5.48813 5.51781 5.55198 5.60526 5.74809 5.93419 6.00128 6.07942 6.79238 7.37496 8.90073 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008980 B = 0.004842 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.344978 B = 5781.056073 C = 8175.306974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.139 4.139 4 C 0.124 3.876 5 N -0.991 5.991 6 C 0.260 3.740 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.012 3.988 10 N -0.928 5.928 11 Si 0.959 3.041 12 H -0.263 1.263 13 H -0.287 1.287 14 H -0.267 1.267 15 S 2.605 3.395 16 O -0.978 6.978 17 O -0.998 6.998 18 C -0.567 4.567 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.085 4.085 23 C -0.112 4.112 24 C -0.128 4.128 25 C -0.126 4.126 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.266 0.734 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.144 0.856 41 H 0.157 0.843 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.147 0.853 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 -6.501 16.572 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.179 4.179 4 C -0.002 4.002 5 N -0.828 5.828 6 C 0.136 3.864 7 C -0.592 4.592 8 H 0.095 0.905 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.784 3.216 12 H -0.188 1.188 13 H -0.213 1.213 14 H -0.192 1.192 15 S 2.703 3.297 16 O -0.969 6.969 17 O -0.988 6.988 18 C -0.697 4.697 19 C -0.119 4.119 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.085 4.085 23 C -0.169 4.169 24 C -0.146 4.146 25 C -0.145 4.145 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.162 0.838 39 H 0.182 0.818 40 H 0.162 0.838 41 H 0.175 0.825 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.164 0.836 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.233 -5.900 16.899 18.189 hybrid contribution 1.049 0.052 -1.530 1.856 sum 4.282 -5.848 15.369 16.992 Atomic orbital electron populations 1.21767 0.95269 1.02306 1.01501 1.21445 0.96487 0.94636 1.02903 1.22048 0.95914 0.98692 1.01227 1.21375 0.94080 0.81222 1.03484 1.57325 1.79102 1.24092 1.22269 1.18729 0.96491 0.91023 0.80160 1.21905 1.02778 1.28030 1.06464 0.90504 1.25847 1.00893 0.94550 0.97519 1.70072 1.38109 1.30938 1.17559 0.85589 0.79547 0.78822 0.77660 1.18790 1.21254 1.19183 1.04974 0.78363 0.73530 0.72878 1.93488 1.66753 1.75788 1.60847 1.93494 1.86215 1.34560 1.84575 1.29522 1.24051 1.12266 1.03851 1.19197 1.03945 0.95727 0.93030 1.21449 0.99092 1.00909 0.91915 1.21430 0.98680 0.95425 0.98590 1.20471 0.97133 0.94456 0.96473 1.20879 1.02174 1.01164 0.92664 1.21361 1.00391 1.01162 0.91655 1.21420 0.98381 0.94800 0.99943 0.93324 0.91019 0.93099 0.91095 0.90678 0.92960 0.93287 0.89895 0.89115 0.96258 0.96404 0.92498 0.83803 0.81816 0.83779 0.82530 0.89635 0.90605 0.89984 0.83574 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.12 -2.89 5.93 30.59 0.18 -2.71 16 3 C -0.14 -4.58 5.54 30.59 0.17 -4.41 16 4 C 0.12 4.24 5.26 86.38 0.45 4.70 16 5 N -0.99 -41.62 2.70 -519.87 -1.40 -43.03 16 6 C 0.26 13.38 5.41 85.63 0.46 13.85 16 7 C -0.55 -28.81 9.38 25.60 0.24 -28.57 16 8 H 0.08 3.67 7.81 -2.91 -0.02 3.64 16 9 C 0.01 0.63 5.46 84.65 0.46 1.10 16 10 N -0.93 -54.13 13.29 21.45 0.28 -53.84 16 11 Si 0.96 41.71 29.54 68.60 2.03 43.74 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 13 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 15 S 2.60 105.62 5.35 -56.49 -0.30 105.32 16 16 O -0.98 -39.58 16.75 -127.65 -2.14 -41.72 16 17 O -1.00 -49.27 16.53 -127.65 -2.11 -51.38 16 18 C -0.57 -18.40 6.30 71.23 0.45 -17.95 16 19 C -0.12 -3.63 5.14 -19.87 -0.10 -3.73 16 20 C -0.11 -2.98 9.70 22.27 0.22 -2.76 16 21 C -0.12 -2.65 9.70 22.27 0.22 -2.43 16 22 C -0.08 -1.78 5.88 -19.86 -0.12 -1.90 16 23 C -0.11 -1.47 10.01 71.24 0.71 -0.76 16 24 C -0.13 -3.16 9.70 22.27 0.22 -2.94 16 25 C -0.13 -3.88 9.70 22.27 0.22 -3.67 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.84 7.90 -2.39 -0.02 1.82 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 34 H 0.09 2.59 7.61 -2.39 -0.02 2.57 16 35 H 0.02 1.06 8.11 -2.39 -0.02 1.04 16 36 H 0.02 1.04 6.82 -2.39 -0.02 1.03 16 37 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.14 4.91 8.09 -2.39 -0.02 4.89 16 39 H 0.16 4.18 8.08 -2.39 -0.02 4.16 16 40 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 41 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 44 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 45 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 46 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -70.91 394.75 1.78 -69.13 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.93 Total: 26.63 kcal Atomic # 6 Polarization: -59.34 SS G_CDS: 4.49 Total: -54.85 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -1.12 Total: -96.87 kcal Atomic # 8 Polarization: -88.85 SS G_CDS: -4.25 Total: -93.09 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 105.62 SS G_CDS: -0.30 Total: 105.32 kcal Total: -70.91 1.78 -69.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259261816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.434 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds