Wall clock time and date at job start Tue Mar 31 2020 15:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00345 * 275.00289 * 5 4 3 7 7 C 1.50697 * 109.47079 * 85.00200 * 6 5 4 8 8 H 1.08000 * 119.99936 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99754 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99674 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00100 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46920 * 90.00615 * 11 9 7 13 13 H 1.48502 * 109.46849 * 210.00337 * 11 9 7 14 14 H 1.48493 * 109.47130 * 330.00506 * 11 9 7 15 15 S 1.65605 * 119.99782 * 95.00317 * 5 4 3 16 16 O 1.42099 * 106.40321 * 203.53813 * 15 5 4 17 17 O 1.42097 * 106.40157 * 336.45932 * 15 5 4 18 18 C 1.76206 * 107.21866 * 89.99987 * 15 5 4 19 19 C 1.38237 * 119.99626 * 269.72633 * 18 15 5 20 20 C 1.38237 * 119.99513 * 179.76620 * 19 18 15 21 21 C 1.50694 * 119.99967 * 180.25334 * 20 19 18 22 22 C 1.38232 * 120.00035 * 0.48495 * 20 19 18 23 23 C 1.38238 * 120.00163 * 359.78789 * 22 20 19 24 24 C 1.50694 * 120.00031 * 179.97438 * 23 22 20 25 25 C 1.38230 * 120.00003 * 89.99939 * 18 15 5 26 26 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 28 28 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 29 29 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 30 30 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 31 31 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 32 32 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 33 33 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 34 34 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 35 35 H 1.08998 * 109.47222 * 205.00373 * 6 5 4 36 36 H 1.09000 * 109.46517 * 324.99960 * 6 5 4 37 37 H 0.97002 * 120.00059 * 179.97438 * 10 9 7 38 38 H 1.07990 * 120.00020 * 359.97438 * 19 18 15 39 39 H 1.09000 * 109.47446 * 270.23038 * 21 20 19 40 40 H 1.08998 * 109.47479 * 30.23138 * 21 20 19 41 41 H 1.09003 * 109.47538 * 150.23131 * 21 20 19 42 42 H 1.08002 * 120.00390 * 179.76996 * 22 20 19 43 43 H 1.09003 * 109.47730 * 269.97919 * 24 23 22 44 44 H 1.08995 * 109.47570 * 29.98021 * 24 23 22 45 45 H 1.09007 * 109.47244 * 149.98487 * 24 23 22 46 46 H 1.08002 * 119.99896 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.1975 3.5521 -1.2635 7 6 2.8751 4.1724 -1.6342 8 1 2.0167 4.0373 -0.9929 9 6 2.7610 4.9116 -2.7924 10 7 1.6068 5.4526 -3.1161 11 14 4.2457 5.1447 -3.9018 12 1 4.2937 4.0476 -4.9015 13 1 4.1394 6.4492 -4.6034 14 1 5.4840 5.1225 -3.0827 15 16 4.4527 3.5618 1.4290 16 8 4.3461 4.9604 1.2011 17 8 3.7279 2.8825 2.4450 18 6 6.1577 3.2356 1.7313 19 6 6.5300 2.1153 2.4506 20 6 7.8679 1.8568 2.6836 21 6 8.2741 0.6326 3.4627 22 6 8.8328 2.7238 2.2060 23 6 8.4601 3.8471 1.4916 24 6 9.5120 4.7926 0.9714 25 6 7.1225 4.1028 1.2541 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9337 0.9285 0.8891 34 1 3.9329 0.9289 -0.8909 35 1 4.9473 4.3351 -1.1508 36 1 4.5079 2.8621 -2.0482 37 1 1.5265 5.9729 -3.9308 38 1 5.7760 1.4404 2.8275 39 1 8.3204 0.8762 4.5242 40 1 7.5422 -0.1591 3.3032 41 1 9.2539 0.2951 3.1245 42 1 9.8778 2.5239 2.3912 43 1 9.7134 5.5593 1.7196 44 1 10.4274 4.2388 0.7632 45 1 9.1559 5.2638 0.0552 46 1 6.8313 4.9802 0.6956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259520116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:02 Heat of formation + Delta-G solvation = -69.658382 kcal Electronic energy + Delta-G solvation = -26513.582388 eV Core-core repulsion = 22915.482822 eV Total energy + Delta-G solvation = -3598.099566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.53937 -36.81784 -36.54585 -35.21829 -33.88777 -33.67785 -32.33694 -32.24277 -29.01483 -27.56239 -26.96945 -26.83995 -23.10416 -22.95702 -21.79812 -20.90358 -20.62022 -18.25256 -17.12116 -17.01468 -16.62729 -16.05046 -15.85828 -15.27729 -14.73241 -14.29464 -14.21822 -13.91201 -13.70885 -13.51475 -13.38693 -13.11977 -12.82262 -12.72029 -12.56548 -12.19745 -12.18808 -12.04410 -12.00237 -11.93005 -11.81604 -11.48343 -11.35602 -11.20278 -11.15282 -10.93516 -10.64583 -10.55854 -10.45358 -10.29956 -10.15675 -9.96606 -9.40105 -9.20427 -8.68994 -8.57676 -8.12007 -6.06496 -4.05043 0.73770 1.03870 1.23041 3.25986 3.29156 3.34030 3.35549 3.71921 4.31651 4.39278 4.50126 4.58662 4.91264 4.96368 5.08138 5.17465 5.21020 5.22575 5.30561 5.34851 5.38736 5.42561 5.47881 5.51096 5.56414 5.64155 5.69144 5.92251 5.95477 5.99720 6.05220 6.12671 6.13985 6.22488 6.26381 6.29487 6.37211 6.40767 6.54711 6.70728 6.79523 6.83480 7.02542 7.15445 7.38692 7.58885 8.50529 8.99407 9.52682 11.06655 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.005547 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.428282 B = 5046.576205 C = 6960.369749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.145 4.145 4 C 0.138 3.862 5 N -0.977 5.977 6 C 0.225 3.775 7 C -0.527 4.527 8 H 0.083 0.917 9 C 0.074 3.926 10 N -0.894 5.894 11 Si 0.868 3.132 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.265 1.265 15 S 2.684 3.316 16 O -0.940 6.940 17 O -0.968 6.968 18 C -0.665 4.665 19 C -0.030 4.030 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.075 4.075 23 C -0.105 4.105 24 C -0.115 4.115 25 C -0.025 4.025 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.264 0.736 38 H 0.137 0.863 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.125 0.875 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.567 -10.179 9.126 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.184 4.184 4 C 0.012 3.988 5 N -0.815 5.815 6 C 0.102 3.898 7 C -0.566 4.566 8 H 0.101 0.899 9 C -0.128 4.128 10 N -0.532 5.532 11 Si 0.695 3.305 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.189 1.189 15 S 2.772 3.228 16 O -0.930 6.930 17 O -0.958 6.958 18 C -0.749 4.749 19 C -0.049 4.049 20 C -0.109 4.109 21 C -0.169 4.169 22 C -0.093 4.093 23 C -0.106 4.106 24 C -0.172 4.172 25 C -0.044 4.044 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.155 0.845 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.143 0.857 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.974 -9.581 9.500 18.718 hybrid contribution 1.394 -0.019 -0.878 1.648 sum 14.368 -9.600 8.622 19.311 Atomic orbital electron populations 1.21748 0.96136 1.00710 1.02226 1.21451 0.95862 0.97304 1.01142 1.22165 0.95389 0.96230 1.04606 1.21114 0.94797 0.81532 1.01385 1.57242 1.78018 1.23322 1.22949 1.19510 0.98493 0.91188 0.80582 1.21395 0.95665 1.31678 1.07876 0.89853 1.24843 0.95562 0.94982 0.97434 1.69888 1.23933 1.34396 1.25029 0.86978 0.84066 0.78074 0.81371 1.20119 1.20928 1.18941 1.02314 0.73553 0.73978 0.72919 1.93605 1.85416 1.29177 1.84804 1.93517 1.69511 1.75832 1.56986 1.31535 1.27198 1.04698 1.11440 1.20784 0.96210 0.94399 0.93520 1.19997 0.93333 0.97574 1.00013 1.20787 1.01987 0.94706 0.99461 1.21139 0.99156 0.93366 0.95633 1.20033 0.94681 0.96627 0.99278 1.20813 0.96729 0.98116 1.01510 1.20895 0.91833 0.97032 0.94666 0.93471 0.92855 0.92405 0.92308 0.92647 0.91761 0.88873 0.91818 0.90923 0.94879 0.95192 0.92579 0.84526 0.91043 0.91172 0.91488 0.85658 0.90939 0.91461 0.90959 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.68 5.93 -26.73 -0.16 -1.84 16 3 C -0.14 -2.57 5.13 -26.73 -0.14 -2.71 16 4 C 0.14 2.33 5.37 -4.04 -0.02 2.30 16 5 N -0.98 -19.52 2.80 -115.66 -0.32 -19.84 16 6 C 0.23 5.17 4.19 -5.19 -0.02 5.15 16 7 C -0.53 -14.47 8.97 -34.44 -0.31 -14.78 16 8 H 0.08 2.49 7.13 -52.49 -0.37 2.12 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 11 Si 0.87 20.73 27.47 -169.99 -4.67 16.06 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 15 S 2.68 53.32 5.60 -107.50 -0.60 52.72 16 16 O -0.94 -22.06 16.25 -57.17 -0.93 -22.99 16 17 O -0.97 -19.76 16.25 -57.17 -0.93 -20.69 16 18 C -0.66 -10.96 5.97 -39.58 -0.24 -11.20 16 19 C -0.03 -0.43 9.18 -39.58 -0.36 -0.79 16 20 C -0.11 -1.29 5.88 -104.63 -0.62 -1.91 16 21 C -0.11 -0.95 10.01 36.00 0.36 -0.59 16 22 C -0.07 -0.85 9.36 -39.58 -0.37 -1.22 16 23 C -0.11 -1.35 5.88 -104.63 -0.62 -1.97 16 24 C -0.11 -1.13 10.01 36.00 0.36 -0.77 16 25 C -0.03 -0.39 9.18 -39.59 -0.36 -0.76 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.92 6.59 -51.93 -0.34 1.58 16 33 H 0.06 0.92 7.61 -51.93 -0.40 0.53 16 34 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 35 H 0.03 0.77 6.67 -51.93 -0.35 0.42 16 36 H 0.03 0.65 7.43 -51.93 -0.39 0.26 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.14 1.77 7.61 -52.49 -0.40 1.37 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 45 H 0.07 0.72 8.09 -51.92 -0.42 0.30 16 46 H 0.14 2.22 7.62 -52.49 -0.40 1.82 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -33.32 386.03 -10.79 -44.12 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.71 Total: 1.74 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: -2.22 Total: -30.76 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.45 Total: -46.02 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -1.86 Total: -43.67 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 16 Polarization: 53.32 SS G_CDS: -0.60 Total: 52.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.32 -10.79 -44.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259520116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.542 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds