Wall clock time and date at job start Tue Mar 31 2020 15:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00345 * 275.00289 * 5 4 3 7 7 C 1.50697 * 109.47079 * 85.00200 * 6 5 4 8 8 H 1.08000 * 119.99936 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99754 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99674 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00100 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46920 * 90.00615 * 11 9 7 13 13 H 1.48502 * 109.46849 * 210.00337 * 11 9 7 14 14 H 1.48493 * 109.47130 * 330.00506 * 11 9 7 15 15 S 1.65605 * 119.99782 * 95.00317 * 5 4 3 16 16 O 1.42099 * 106.40321 * 203.53813 * 15 5 4 17 17 O 1.42097 * 106.40157 * 336.45932 * 15 5 4 18 18 C 1.76206 * 107.21866 * 89.99987 * 15 5 4 19 19 C 1.38237 * 119.99626 * 269.72633 * 18 15 5 20 20 C 1.38237 * 119.99513 * 179.76620 * 19 18 15 21 21 C 1.50694 * 119.99967 * 180.25334 * 20 19 18 22 22 C 1.38232 * 120.00035 * 0.48495 * 20 19 18 23 23 C 1.38238 * 120.00163 * 359.78789 * 22 20 19 24 24 C 1.50694 * 120.00031 * 179.97438 * 23 22 20 25 25 C 1.38230 * 120.00003 * 89.99939 * 18 15 5 26 26 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 28 28 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 29 29 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 30 30 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 31 31 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 32 32 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 33 33 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 34 34 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 35 35 H 1.08998 * 109.47222 * 205.00373 * 6 5 4 36 36 H 1.09000 * 109.46517 * 324.99960 * 6 5 4 37 37 H 0.97002 * 120.00059 * 179.97438 * 10 9 7 38 38 H 1.07990 * 120.00020 * 359.97438 * 19 18 15 39 39 H 1.09000 * 109.47446 * 270.23038 * 21 20 19 40 40 H 1.08998 * 109.47479 * 30.23138 * 21 20 19 41 41 H 1.09003 * 109.47538 * 150.23131 * 21 20 19 42 42 H 1.08002 * 120.00390 * 179.76996 * 22 20 19 43 43 H 1.09003 * 109.47730 * 269.97919 * 24 23 22 44 44 H 1.08995 * 109.47570 * 29.98021 * 24 23 22 45 45 H 1.09007 * 109.47244 * 149.98487 * 24 23 22 46 46 H 1.08002 * 119.99896 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.1975 3.5521 -1.2635 7 6 2.8751 4.1724 -1.6342 8 1 2.0167 4.0373 -0.9929 9 6 2.7610 4.9116 -2.7924 10 7 1.6068 5.4526 -3.1161 11 14 4.2457 5.1447 -3.9018 12 1 4.2937 4.0476 -4.9015 13 1 4.1394 6.4492 -4.6034 14 1 5.4840 5.1225 -3.0827 15 16 4.4527 3.5618 1.4290 16 8 4.3461 4.9604 1.2011 17 8 3.7279 2.8825 2.4450 18 6 6.1577 3.2356 1.7313 19 6 6.5300 2.1153 2.4506 20 6 7.8679 1.8568 2.6836 21 6 8.2741 0.6326 3.4627 22 6 8.8328 2.7238 2.2060 23 6 8.4601 3.8471 1.4916 24 6 9.5120 4.7926 0.9714 25 6 7.1225 4.1028 1.2541 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9337 0.9285 0.8891 34 1 3.9329 0.9289 -0.8909 35 1 4.9473 4.3351 -1.1508 36 1 4.5079 2.8621 -2.0482 37 1 1.5265 5.9729 -3.9308 38 1 5.7760 1.4404 2.8275 39 1 8.3204 0.8762 4.5242 40 1 7.5422 -0.1591 3.3032 41 1 9.2539 0.2951 3.1245 42 1 9.8778 2.5239 2.3912 43 1 9.7134 5.5593 1.7196 44 1 10.4274 4.2388 0.7632 45 1 9.1559 5.2638 0.0552 46 1 6.8313 4.9802 0.6956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259520116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:02 Heat of formation + Delta-G solvation = -90.828062 kcal Electronic energy + Delta-G solvation = -26514.500374 eV Core-core repulsion = 22915.482822 eV Total energy + Delta-G solvation = -3599.017553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53284 -38.40937 -38.14760 -36.88933 -35.39048 -34.54700 -34.30439 -33.29305 -30.65192 -28.67527 -28.30337 -27.75600 -24.61191 -24.16875 -23.52295 -21.95728 -21.79945 -19.77314 -19.02629 -18.50263 -18.19447 -17.37876 -17.02321 -16.66122 -16.18236 -16.00180 -15.33445 -15.07416 -14.93234 -14.75610 -14.54551 -14.25304 -14.14499 -14.01320 -13.76106 -13.53198 -13.43662 -13.39801 -13.19671 -13.14661 -13.03791 -12.89768 -12.83092 -12.80018 -12.56998 -12.20295 -12.14353 -11.94267 -11.92058 -11.80480 -11.63718 -11.55930 -11.23888 -10.73406 -10.21277 -9.76698 -9.67589 -8.24510 -6.28530 -0.64191 -0.20421 0.22552 1.35783 1.39891 1.48812 2.00543 2.37032 2.48390 2.82346 3.08316 3.26030 3.75002 3.76640 3.87054 3.99861 4.08051 4.22760 4.24817 4.28596 4.31986 4.35505 4.58038 4.60626 4.66329 4.75049 4.77815 4.79701 4.84892 4.87331 4.93365 4.97784 5.05322 5.07006 5.11749 5.13179 5.27147 5.29101 5.35159 5.35892 5.43957 5.49657 5.51344 5.62694 5.80474 5.88350 6.34989 6.74760 7.33023 8.92535 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.005547 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.428282 B = 5046.576205 C = 6960.369749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.129 3.871 5 N -0.983 5.983 6 C 0.232 3.768 7 C -0.531 4.531 8 H 0.037 0.963 9 C 0.009 3.991 10 N -0.948 5.948 11 Si 0.936 3.064 12 H -0.255 1.255 13 H -0.285 1.285 14 H -0.242 1.242 15 S 2.684 3.316 16 O -0.992 6.992 17 O -0.985 6.985 18 C -0.668 4.668 19 C -0.045 4.045 20 C -0.102 4.102 21 C -0.113 4.113 22 C -0.066 4.066 23 C -0.104 4.104 24 C -0.116 4.116 25 C -0.055 4.055 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.055 0.945 37 H 0.266 0.734 38 H 0.145 0.855 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.167 0.833 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.151 -12.991 9.589 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.183 4.183 4 C 0.004 3.996 5 N -0.821 5.821 6 C 0.108 3.892 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.188 4.188 10 N -0.588 5.588 11 Si 0.758 3.242 12 H -0.179 1.179 13 H -0.211 1.211 14 H -0.165 1.165 15 S 2.779 3.221 16 O -0.982 6.982 17 O -0.975 6.975 18 C -0.758 4.758 19 C -0.064 4.064 20 C -0.103 4.103 21 C -0.169 4.169 22 C -0.084 4.084 23 C -0.105 4.105 24 C -0.172 4.172 25 C -0.075 4.075 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.162 0.838 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.184 0.816 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 17.497 -12.412 9.972 23.657 hybrid contribution -0.013 0.815 -0.867 1.190 sum 17.484 -11.596 9.105 22.871 Atomic orbital electron populations 1.21768 0.96053 1.02137 1.01022 1.21438 0.95977 0.94657 1.03025 1.22101 0.96584 0.98312 1.01293 1.21429 0.93851 0.80387 1.03912 1.57140 1.79005 1.24230 1.21713 1.19290 0.95668 0.91804 0.82470 1.21671 0.96492 1.31716 1.07127 0.94446 1.25835 0.98977 0.94628 0.99372 1.70067 1.26775 1.35980 1.26023 0.85889 0.80441 0.78387 0.79452 1.17938 1.21113 1.16533 1.01774 0.74948 0.72801 0.72582 1.93532 1.86981 1.32324 1.85394 1.93477 1.71206 1.75627 1.57203 1.30732 1.23901 1.06870 1.14263 1.21018 0.98003 0.93793 0.93612 1.20442 0.92154 0.98640 0.99045 1.20900 1.03376 0.93085 0.99581 1.21652 1.01150 0.91934 0.93618 1.20386 0.93819 0.97590 0.98750 1.20906 0.96751 0.98136 1.01449 1.20960 0.93415 0.96977 0.96100 0.90622 0.93636 0.94168 0.90584 0.90381 0.94424 0.92907 0.88890 0.88553 0.94883 0.92723 0.92538 0.83777 0.89811 0.90517 0.89147 0.81564 0.89803 0.88742 0.91583 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.91 71.98 0.71 -3.44 16 2 C -0.11 -3.10 5.93 30.59 0.18 -2.92 16 3 C -0.14 -5.34 5.13 30.59 0.16 -5.18 16 4 C 0.13 4.33 5.37 86.38 0.46 4.79 16 5 N -0.98 -40.33 2.80 -519.85 -1.45 -41.79 16 6 C 0.23 10.83 4.19 85.63 0.36 11.19 16 7 C -0.53 -30.75 8.97 25.60 0.23 -30.52 16 8 H 0.04 2.44 7.13 -2.91 -0.02 2.42 16 9 C 0.01 0.55 5.47 84.65 0.46 1.01 16 10 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 11 Si 0.94 43.03 27.47 68.60 1.88 44.92 16 12 H -0.25 -10.85 7.11 99.48 0.71 -10.14 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 15 S 2.68 111.26 5.60 -56.49 -0.32 110.94 16 16 O -0.99 -49.81 16.25 -128.00 -2.08 -51.89 16 17 O -0.98 -41.78 16.25 -128.00 -2.08 -43.86 16 18 C -0.67 -21.84 5.97 22.27 0.13 -21.70 16 19 C -0.04 -1.19 9.18 22.27 0.20 -0.98 16 20 C -0.10 -2.03 5.88 -19.87 -0.12 -2.14 16 21 C -0.11 -1.35 10.01 71.23 0.71 -0.63 16 22 C -0.07 -1.20 9.36 22.27 0.21 -0.99 16 23 C -0.10 -2.39 5.88 -19.87 -0.12 -2.50 16 24 C -0.12 -1.89 10.01 71.23 0.71 -1.18 16 25 C -0.05 -1.69 9.18 22.27 0.20 -1.49 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 2.36 6.59 -2.39 -0.02 2.35 16 33 H 0.09 2.57 7.61 -2.39 -0.02 2.55 16 34 H 0.10 2.77 8.00 -2.39 -0.02 2.75 16 35 H 0.03 1.55 6.67 -2.39 -0.02 1.54 16 36 H 0.05 2.29 7.43 -2.39 -0.02 2.27 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.14 3.47 7.61 -2.92 -0.02 3.45 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 41 H 0.09 0.70 8.09 -2.39 -0.02 0.68 16 42 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 45 H 0.07 1.17 8.09 -2.38 -0.02 1.15 16 46 H 0.12 4.10 7.62 -2.91 -0.02 4.08 16 Total: -1.00 -79.06 386.03 1.65 -77.41 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.89 Total: 20.87 kcal Atomic # 6 Polarization: -61.21 SS G_CDS: 4.51 Total: -56.70 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -1.16 Total: -101.68 kcal Atomic # 8 Polarization: -91.59 SS G_CDS: -4.16 Total: -95.75 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.92 kcal Atomic # 16 Polarization: 111.26 SS G_CDS: -0.32 Total: 110.94 kcal Total: -79.06 1.65 -77.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259520116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.422 kcal (2) G-P(sol) polarization free energy of solvation -79.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds