Wall clock time and date at job start Tue Mar 31 2020 15:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47697 * 2 1 4 4 C 1.52994 * 109.47333 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46910 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00319 * 274.99985 * 5 4 3 7 7 C 1.50706 * 109.46830 * 275.00366 * 6 5 4 8 8 H 1.07999 * 120.00476 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99713 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00134 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46622 * 90.00043 * 11 9 7 13 13 H 1.48500 * 109.46873 * 210.00190 * 11 9 7 14 14 H 1.48500 * 109.46957 * 330.00271 * 11 9 7 15 15 S 1.65605 * 120.00023 * 95.00095 * 5 4 3 16 16 O 1.42103 * 104.27839 * 153.92710 * 15 5 4 17 17 O 1.42106 * 104.27754 * 26.07127 * 15 5 4 18 18 C 1.81397 * 104.44986 * 270.00007 * 15 5 4 19 19 C 1.50701 * 109.47029 * 180.02562 * 18 15 5 20 20 C 1.38255 * 119.99838 * 89.99860 * 19 18 15 21 21 C 1.38220 * 119.99681 * 179.97438 * 20 19 18 22 22 C 1.38253 * 120.00046 * 0.05260 * 21 20 19 23 23 C 1.38205 * 119.99884 * 359.94758 * 22 21 20 24 24 C 1.38208 * 119.99804 * 270.01732 * 19 18 15 25 25 C 1.50697 * 120.00408 * 0.02562 * 24 19 18 26 26 H 1.09004 * 109.46817 * 60.00027 * 1 2 3 27 27 H 1.08993 * 109.47461 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47404 * 300.00809 * 1 2 3 29 29 H 1.08999 * 109.47404 * 239.99191 * 2 1 3 30 30 H 1.09004 * 109.46817 * 119.99973 * 2 1 3 31 31 H 1.09004 * 109.46706 * 59.99455 * 3 2 1 32 32 H 1.08993 * 109.46615 * 300.00137 * 3 2 1 33 33 H 1.08999 * 109.47266 * 59.99497 * 4 3 2 34 34 H 1.09004 * 109.47318 * 300.00057 * 4 3 2 35 35 H 1.08996 * 109.46915 * 34.99955 * 6 5 4 36 36 H 1.08998 * 109.47572 * 155.00181 * 6 5 4 37 37 H 0.97005 * 120.00194 * 180.02562 * 10 9 7 38 38 H 1.08990 * 109.47316 * 59.99595 * 18 15 5 39 39 H 1.09006 * 109.47134 * 299.99533 * 18 15 5 40 40 H 1.08000 * 120.00604 * 359.72524 * 20 19 18 41 41 H 1.08002 * 119.99604 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.99964 * 179.97438 * 22 21 20 43 43 H 1.08000 * 119.99783 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47001 * 89.99263 * 25 24 19 45 45 H 1.08997 * 109.47350 * 209.99638 * 25 24 19 46 46 H 1.08998 * 109.46705 * 329.99856 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8235 0.0000 6 6 4.1989 3.5503 -1.2642 7 6 5.5357 3.2299 -1.8819 8 1 6.2131 2.5530 -1.3825 9 6 5.8940 3.8010 -3.0846 10 7 5.0694 4.6256 -3.6925 11 14 7.5513 3.4045 -3.8499 12 1 7.4167 2.2204 -4.7359 13 1 8.0200 4.5674 -4.6455 14 1 8.5345 3.1104 -2.7766 15 16 4.4517 3.5634 1.4285 16 8 5.4100 4.5465 1.0617 17 8 4.7969 2.4913 2.2950 18 6 2.9093 4.3490 1.9710 19 6 3.1422 5.0640 3.2770 20 6 3.5455 6.3864 3.2787 21 6 3.7585 7.0424 4.4766 22 6 3.5693 6.3757 5.6729 23 6 3.1662 5.0538 5.6711 24 6 2.9529 4.3976 4.4729 25 6 2.5143 2.9559 4.4710 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9562 -0.8899 33 1 3.9338 0.9283 -0.8890 34 1 3.9330 0.9286 0.8909 35 1 3.4027 3.2510 -1.9457 36 1 4.1328 4.6220 -1.0766 37 1 5.3213 5.0271 -4.5389 38 1 2.1413 3.5874 2.1051 39 1 2.5824 5.0661 1.2179 40 1 3.6979 6.9058 2.3442 41 1 4.0731 8.0755 4.4779 42 1 3.7362 6.8881 6.6089 43 1 3.0180 4.5331 6.6056 44 1 3.3916 2.3093 4.4594 45 1 1.9259 2.7539 5.3660 46 1 1.9081 2.7618 3.5862 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260018940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:12 Heat of formation + Delta-G solvation = -66.414272 kcal Electronic energy + Delta-G solvation = -26541.027075 eV Core-core repulsion = 22943.068184 eV Total energy + Delta-G solvation = -3597.958891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.57212 -36.78354 -36.40353 -35.24694 -34.07577 -33.50459 -32.34084 -32.21413 -28.87254 -27.82730 -26.61926 -26.43171 -23.39817 -22.29000 -22.03761 -21.07682 -20.62678 -18.15795 -17.06745 -16.73377 -16.33019 -16.01759 -15.73894 -15.34793 -15.03820 -14.91204 -14.44060 -13.96464 -13.67127 -13.59545 -13.26064 -13.11789 -12.88850 -12.73932 -12.51957 -12.31491 -12.26270 -12.06461 -11.84970 -11.49860 -11.37580 -11.31813 -11.15579 -11.11684 -11.02245 -10.94419 -10.85404 -10.74473 -10.65635 -10.41469 -10.26960 -9.92546 -9.70407 -8.83695 -8.62232 -8.41951 -7.99765 -6.04463 -4.07357 0.65573 1.32757 1.40883 3.32919 3.34813 3.39627 3.47054 3.69360 4.32134 4.46107 4.46699 4.63148 4.80339 4.88230 4.96763 5.03561 5.10783 5.20960 5.25119 5.28164 5.31107 5.47702 5.48123 5.51617 5.64336 5.70531 5.80251 5.83444 5.85518 5.87984 5.94413 5.99371 6.16079 6.17995 6.28028 6.31290 6.38687 6.44840 6.53756 6.60027 6.64757 6.93291 7.20395 7.38752 7.60318 7.93534 8.22873 8.94977 9.57408 11.04262 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.004850 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.502260 B = 5771.659840 C = 7649.851361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.144 4.144 4 C 0.119 3.881 5 N -0.983 5.983 6 C 0.255 3.745 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.062 3.938 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.272 1.272 15 S 2.603 3.397 16 O -0.932 6.932 17 O -0.967 6.967 18 C -0.605 4.605 19 C -0.084 4.084 20 C -0.102 4.102 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.072 4.072 25 C -0.130 4.130 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 -2.151 14.790 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.183 4.183 4 C -0.008 4.008 5 N -0.821 5.821 6 C 0.133 3.867 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.140 4.140 10 N -0.537 5.537 11 Si 0.723 3.277 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.197 1.197 15 S 2.694 3.306 16 O -0.923 6.923 17 O -0.957 6.957 18 C -0.729 4.729 19 C -0.085 4.085 20 C -0.121 4.121 21 C -0.143 4.143 22 C -0.133 4.133 23 C -0.141 4.141 24 C -0.073 4.073 25 C -0.187 4.187 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.171 -2.033 14.996 17.695 hybrid contribution 0.062 0.184 -0.748 0.773 sum -9.109 -1.849 14.248 17.011 Atomic orbital electron populations 1.21769 0.96184 1.01207 1.01701 1.21461 0.95509 0.96851 1.02293 1.22168 0.97105 0.96836 1.02191 1.21265 0.92209 0.83304 1.04001 1.57501 1.81105 1.21038 1.22465 1.19081 0.97592 0.91123 0.78868 1.21470 1.01973 1.27530 1.05239 0.92106 1.24915 0.97333 0.94860 0.96912 1.69914 1.36186 1.30447 1.17178 0.86531 0.84152 0.77814 0.79198 1.20638 1.21088 1.19681 1.05356 0.76624 0.74939 0.73691 1.93625 1.54887 1.62404 1.81334 1.93488 1.81763 1.53228 1.67231 1.30054 1.25876 1.13027 1.03928 1.18909 1.02988 0.94579 0.92058 1.21242 0.97947 0.93693 0.99203 1.21140 1.00670 1.00271 0.92204 1.21185 0.99232 0.94743 0.98128 1.21000 1.00935 0.94872 0.97244 1.19853 0.98422 0.96581 0.92439 1.21046 1.02570 0.92373 1.02669 0.92713 0.93045 0.93040 0.91572 0.91954 0.92954 0.90914 0.89475 0.90164 0.94537 0.94559 0.92748 0.84546 0.84289 0.84999 0.85582 0.85853 0.85706 0.89042 0.91279 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.39 5.93 -26.73 -0.16 -1.55 16 3 C -0.14 -1.95 5.54 -26.73 -0.15 -2.10 16 4 C 0.12 2.01 5.65 -4.05 -0.02 1.98 16 5 N -0.98 -19.90 2.70 -115.67 -0.31 -20.21 16 6 C 0.26 6.26 5.01 -5.19 -0.03 6.23 16 7 C -0.52 -14.63 9.38 -34.44 -0.32 -14.96 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 11 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 S 2.60 51.15 5.35 -107.50 -0.58 50.57 16 16 O -0.93 -22.48 16.99 -57.54 -0.98 -23.45 16 17 O -0.97 -19.48 15.86 -57.54 -0.91 -20.39 16 18 C -0.60 -9.01 5.90 36.01 0.21 -8.79 16 19 C -0.08 -1.25 5.14 -104.63 -0.54 -1.78 16 20 C -0.10 -1.46 9.70 -39.58 -0.38 -1.85 16 21 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 22 C -0.11 -1.27 10.05 -39.59 -0.40 -1.67 16 23 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 24 C -0.07 -0.97 5.88 -104.63 -0.62 -1.58 16 25 C -0.13 -1.52 9.48 36.00 0.34 -1.18 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.63 6.96 -51.93 -0.36 0.27 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 34 H 0.08 1.29 6.82 -51.93 -0.35 0.94 16 35 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 36 H 0.04 0.94 7.61 -51.93 -0.40 0.54 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.14 1.69 4.77 -51.93 -0.25 1.44 16 39 H 0.14 1.91 8.09 -51.92 -0.42 1.49 16 40 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 41 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.09 1.16 7.59 -51.93 -0.39 0.77 16 45 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 46 H 0.07 0.74 5.95 -51.93 -0.31 0.43 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -33.51 387.11 -11.31 -44.82 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.52 Total: 1.69 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -2.57 Total: -30.46 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.42 Total: -45.51 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -1.89 Total: -43.85 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 51.15 SS G_CDS: -0.58 Total: 50.57 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.51 -11.31 -44.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260018940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.592 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds