Wall clock time and date at job start Tue Mar 31 2020 15:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47697 * 2 1 4 4 C 1.52994 * 109.47333 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46910 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00319 * 274.99985 * 5 4 3 7 7 C 1.50706 * 109.46830 * 275.00366 * 6 5 4 8 8 H 1.07999 * 120.00476 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99713 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00134 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00003 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46622 * 90.00043 * 11 9 7 13 13 H 1.48500 * 109.46873 * 210.00190 * 11 9 7 14 14 H 1.48500 * 109.46957 * 330.00271 * 11 9 7 15 15 S 1.65605 * 120.00023 * 95.00095 * 5 4 3 16 16 O 1.42103 * 104.27839 * 153.92710 * 15 5 4 17 17 O 1.42106 * 104.27754 * 26.07127 * 15 5 4 18 18 C 1.81397 * 104.44986 * 270.00007 * 15 5 4 19 19 C 1.50701 * 109.47029 * 180.02562 * 18 15 5 20 20 C 1.38255 * 119.99838 * 89.99860 * 19 18 15 21 21 C 1.38220 * 119.99681 * 179.97438 * 20 19 18 22 22 C 1.38253 * 120.00046 * 0.05260 * 21 20 19 23 23 C 1.38205 * 119.99884 * 359.94758 * 22 21 20 24 24 C 1.38208 * 119.99804 * 270.01732 * 19 18 15 25 25 C 1.50697 * 120.00408 * 0.02562 * 24 19 18 26 26 H 1.09004 * 109.46817 * 60.00027 * 1 2 3 27 27 H 1.08993 * 109.47461 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47404 * 300.00809 * 1 2 3 29 29 H 1.08999 * 109.47404 * 239.99191 * 2 1 3 30 30 H 1.09004 * 109.46817 * 119.99973 * 2 1 3 31 31 H 1.09004 * 109.46706 * 59.99455 * 3 2 1 32 32 H 1.08993 * 109.46615 * 300.00137 * 3 2 1 33 33 H 1.08999 * 109.47266 * 59.99497 * 4 3 2 34 34 H 1.09004 * 109.47318 * 300.00057 * 4 3 2 35 35 H 1.08996 * 109.46915 * 34.99955 * 6 5 4 36 36 H 1.08998 * 109.47572 * 155.00181 * 6 5 4 37 37 H 0.97005 * 120.00194 * 180.02562 * 10 9 7 38 38 H 1.08990 * 109.47316 * 59.99595 * 18 15 5 39 39 H 1.09006 * 109.47134 * 299.99533 * 18 15 5 40 40 H 1.08000 * 120.00604 * 359.72524 * 20 19 18 41 41 H 1.08002 * 119.99604 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.99964 * 179.97438 * 22 21 20 43 43 H 1.08000 * 119.99783 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47001 * 89.99263 * 25 24 19 45 45 H 1.08997 * 109.47350 * 209.99638 * 25 24 19 46 46 H 1.08998 * 109.46705 * 329.99856 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8235 0.0000 6 6 4.1989 3.5503 -1.2642 7 6 5.5357 3.2299 -1.8819 8 1 6.2131 2.5530 -1.3825 9 6 5.8940 3.8010 -3.0846 10 7 5.0694 4.6256 -3.6925 11 14 7.5513 3.4045 -3.8499 12 1 7.4167 2.2204 -4.7359 13 1 8.0200 4.5674 -4.6455 14 1 8.5345 3.1104 -2.7766 15 16 4.4517 3.5634 1.4285 16 8 5.4100 4.5465 1.0617 17 8 4.7969 2.4913 2.2950 18 6 2.9093 4.3490 1.9710 19 6 3.1422 5.0640 3.2770 20 6 3.5455 6.3864 3.2787 21 6 3.7585 7.0424 4.4766 22 6 3.5693 6.3757 5.6729 23 6 3.1662 5.0538 5.6711 24 6 2.9529 4.3976 4.4729 25 6 2.5143 2.9559 4.4710 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9562 -0.8899 33 1 3.9338 0.9283 -0.8890 34 1 3.9330 0.9286 0.8909 35 1 3.4027 3.2510 -1.9457 36 1 4.1328 4.6220 -1.0766 37 1 5.3213 5.0271 -4.5389 38 1 2.1413 3.5874 2.1051 39 1 2.5824 5.0661 1.2179 40 1 3.6979 6.9058 2.3442 41 1 4.0731 8.0755 4.4779 42 1 3.7362 6.8881 6.6089 43 1 3.0180 4.5331 6.6056 44 1 3.3916 2.3093 4.4594 45 1 1.9259 2.7539 5.3660 46 1 1.9081 2.7618 3.5862 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260018940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:12 Heat of formation + Delta-G solvation = -86.371238 kcal Electronic energy + Delta-G solvation = -26541.892474 eV Core-core repulsion = 22943.068184 eV Total energy + Delta-G solvation = -3598.824290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53410 -38.26121 -38.00962 -36.89397 -35.49885 -34.50722 -34.22486 -33.19703 -30.30965 -28.89016 -28.22670 -27.51188 -25.02433 -23.70124 -23.13623 -22.06101 -21.68384 -19.74713 -18.76259 -18.42099 -17.72209 -17.43015 -17.04554 -16.68448 -16.29624 -16.08967 -15.92054 -15.31792 -15.01912 -14.66596 -14.33998 -14.26072 -14.07282 -14.03535 -13.86877 -13.60641 -13.50713 -13.26801 -13.12099 -13.02465 -12.91667 -12.88145 -12.82855 -12.50736 -12.35231 -12.21193 -12.10752 -11.98084 -11.94970 -11.80990 -11.74076 -11.60720 -11.31032 -10.58902 -9.91972 -9.71736 -9.49947 -8.20159 -6.30798 -0.80714 0.36562 0.38370 1.36831 1.39348 1.49954 1.80412 2.40697 2.71156 2.95244 3.09768 3.15992 3.37261 3.71771 3.89322 3.95766 3.99600 4.09564 4.18721 4.23358 4.32703 4.36365 4.44204 4.58514 4.67767 4.75007 4.77279 4.80855 4.84748 4.89208 5.00654 5.03828 5.09154 5.17740 5.20184 5.29735 5.35833 5.38542 5.44772 5.51692 5.53406 5.56249 5.56816 5.71261 5.94314 6.01524 6.12876 6.76351 7.37204 8.87225 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.004850 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.502260 B = 5771.659840 C = 7649.851361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.112 3.888 5 N -0.991 5.991 6 C 0.271 3.729 7 C -0.544 4.544 8 H 0.046 0.954 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.952 3.048 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.278 1.278 15 S 2.595 3.405 16 O -0.991 6.991 17 O -0.979 6.979 18 C -0.571 4.571 19 C -0.116 4.116 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.108 4.108 23 C -0.126 4.126 24 C -0.083 4.083 25 C -0.135 4.135 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.032 0.968 36 H 0.017 0.983 37 H 0.267 0.733 38 H 0.166 0.834 39 H 0.148 0.852 40 H 0.124 0.876 41 H 0.148 0.852 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 -2.552 16.962 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.177 4.177 4 C -0.013 4.013 5 N -0.828 5.828 6 C 0.147 3.853 7 C -0.584 4.584 8 H 0.065 0.935 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.777 3.223 12 H -0.189 1.189 13 H -0.202 1.202 14 H -0.203 1.203 15 S 2.693 3.307 16 O -0.981 6.981 17 O -0.970 6.970 18 C -0.700 4.700 19 C -0.118 4.118 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.126 4.126 23 C -0.144 4.144 24 C -0.085 4.085 25 C -0.191 4.191 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.184 0.816 39 H 0.166 0.834 40 H 0.142 0.858 41 H 0.166 0.834 42 H 0.176 0.824 43 H 0.174 0.826 44 H 0.096 0.904 45 H 0.117 0.883 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.508 -2.494 17.136 20.256 hybrid contribution 0.452 0.366 -1.244 1.373 sum -10.056 -2.128 15.892 18.927 Atomic orbital electron populations 1.21751 0.94703 1.02219 1.01959 1.21466 0.96745 0.95088 1.02674 1.22111 0.94268 0.98715 1.02566 1.21470 0.94703 0.81538 1.03593 1.57337 1.81893 1.22360 1.21220 1.18615 0.95866 0.90392 0.80393 1.21796 1.03323 1.27465 1.05781 0.93520 1.25688 1.00716 0.94763 0.97418 1.69994 1.37703 1.31080 1.17601 0.85644 0.79885 0.78374 0.78365 1.18930 1.20187 1.20274 1.05325 0.77864 0.74291 0.73257 1.93549 1.58805 1.63582 1.82172 1.93455 1.83022 1.53648 1.66865 1.29649 1.22097 1.13566 1.04696 1.19037 1.05355 0.95144 0.92232 1.21435 0.98946 0.94107 1.00097 1.21488 1.00220 1.01463 0.91908 1.21657 0.97180 0.94688 0.99054 1.21451 0.99845 0.95275 0.97830 1.20190 0.98248 0.97493 0.92544 1.21132 1.02466 0.90970 1.04520 0.93176 0.91690 0.92092 0.92036 0.90848 0.91078 0.92028 0.91050 0.89394 0.94987 0.96535 0.92390 0.81601 0.83373 0.85795 0.83405 0.82360 0.82619 0.90420 0.88328 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 71.98 0.71 -1.91 16 2 C -0.12 -2.58 5.93 30.59 0.18 -2.40 16 3 C -0.14 -3.63 5.54 30.59 0.17 -3.46 16 4 C 0.11 3.87 5.65 86.38 0.49 4.35 16 5 N -0.99 -41.56 2.70 -519.87 -1.40 -42.96 16 6 C 0.27 13.90 5.01 85.64 0.43 14.33 16 7 C -0.54 -31.69 9.38 25.60 0.24 -31.45 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.01 0.78 5.46 84.66 0.46 1.24 16 10 N -0.92 -54.73 13.29 21.45 0.28 -54.45 16 11 Si 0.95 45.68 29.54 68.60 2.03 47.71 16 12 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 15 S 2.59 104.98 5.35 -56.49 -0.30 104.68 16 16 O -0.99 -50.41 16.99 -127.65 -2.17 -52.58 16 17 O -0.98 -40.11 15.86 -127.65 -2.02 -42.14 16 18 C -0.57 -16.73 5.90 71.24 0.42 -16.31 16 19 C -0.12 -3.35 5.14 -19.87 -0.10 -3.45 16 20 C -0.13 -3.60 9.70 22.27 0.22 -3.38 16 21 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 22 C -0.11 -2.03 10.05 22.27 0.22 -1.81 16 23 C -0.13 -2.53 9.70 22.27 0.22 -2.32 16 24 C -0.08 -2.07 5.88 -19.87 -0.12 -2.18 16 25 C -0.13 -2.78 9.48 71.23 0.68 -2.11 16 26 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.07 1.58 6.96 -2.39 -0.02 1.57 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16 34 H 0.09 2.85 6.82 -2.38 -0.02 2.84 16 35 H 0.03 1.65 8.11 -2.39 -0.02 1.63 16 36 H 0.02 0.91 7.61 -2.39 -0.02 0.89 16 37 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 38 H 0.17 3.78 4.77 -2.40 -0.01 3.77 16 39 H 0.15 4.09 8.09 -2.39 -0.02 4.07 16 40 H 0.12 3.55 8.06 -2.91 -0.02 3.52 16 41 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 42 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.08 1.84 7.59 -2.39 -0.02 1.82 16 45 H 0.10 1.41 8.09 -2.39 -0.02 1.39 16 46 H 0.07 1.39 5.95 -2.39 -0.01 1.37 16 Total: -1.00 -75.22 387.11 1.80 -73.42 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.95 Total: 19.93 kcal Atomic # 6 Polarization: -58.05 SS G_CDS: 4.44 Total: -53.61 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -1.12 Total: -97.41 kcal Atomic # 8 Polarization: -90.53 SS G_CDS: -4.19 Total: -94.72 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 104.98 SS G_CDS: -0.30 Total: 104.68 kcal Total: -75.22 1.80 -73.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260018940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.950 kcal (2) G-P(sol) polarization free energy of solvation -75.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds