Wall clock time and date at job start Tue Mar 31 2020 15:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46856 * 2 1 4 4 C 1.53007 * 109.47193 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47016 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00426 * 275.11915 * 5 4 3 7 7 C 1.50701 * 109.47199 * 275.00490 * 6 5 4 8 8 H 1.07996 * 120.00251 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99823 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99653 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 119.99771 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47241 * 60.00224 * 11 9 7 13 13 H 1.48500 * 109.47386 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47515 * 300.00189 * 11 9 7 15 15 S 1.65597 * 119.99907 * 95.12429 * 5 4 3 16 16 O 1.42104 * 106.39963 * 333.28420 * 15 5 4 17 17 O 1.42092 * 106.40543 * 200.36256 * 15 5 4 18 18 C 1.76203 * 107.22044 * 86.81978 * 15 5 4 19 19 C 1.38265 * 119.99883 * 346.38900 * 18 15 5 20 20 C 1.38211 * 119.99700 * 180.02562 * 19 18 15 21 21 C 1.38255 * 120.00195 * 359.96746 * 20 19 18 22 22 C 1.38215 * 119.99878 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.99365 * 179.97438 * 22 21 20 24 24 C 1.38214 * 120.00162 * 166.35528 * 18 15 5 25 25 C 1.50696 * 119.99872 * 0.05363 * 24 18 15 26 26 H 1.09003 * 109.46661 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47223 * 299.99990 * 1 2 3 28 28 H 1.08995 * 109.47454 * 60.00084 * 1 2 3 29 29 H 1.09000 * 109.47727 * 239.99900 * 2 1 3 30 30 H 1.09003 * 109.47204 * 119.99638 * 2 1 3 31 31 H 1.09006 * 109.47002 * 60.00170 * 3 2 1 32 32 H 1.08990 * 109.47246 * 299.99779 * 3 2 1 33 33 H 1.09006 * 109.46620 * 60.00411 * 4 3 2 34 34 H 1.08994 * 109.47094 * 300.00746 * 4 3 2 35 35 H 1.09002 * 109.46747 * 35.00329 * 6 5 4 36 36 H 1.08994 * 109.46980 * 154.99720 * 6 5 4 37 37 H 0.97002 * 119.99303 * 179.97438 * 10 9 7 38 38 H 1.07995 * 119.99778 * 0.26837 * 19 18 15 39 39 H 1.07998 * 119.99478 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.99878 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47306 * 90.00002 * 23 22 21 42 42 H 1.09005 * 109.46830 * 209.99467 * 23 22 21 43 43 H 1.08994 * 109.47518 * 329.99591 * 23 22 21 44 44 H 1.09005 * 109.46836 * 264.30347 * 25 24 18 45 45 H 1.09001 * 109.47326 * 24.29941 * 25 24 18 46 46 H 1.09000 * 109.47459 * 144.30149 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.1961 3.5515 -1.2640 7 6 5.5317 3.2318 -1.8845 8 1 6.2101 2.5546 -1.3870 9 6 5.8875 3.8038 -3.0876 10 7 5.0612 4.6280 -3.6937 11 14 7.5432 3.4080 -3.8564 12 1 7.6337 1.9480 -4.1127 13 1 7.6825 4.1445 -5.1384 14 1 8.6295 3.8161 -2.9299 15 16 4.4543 3.5626 1.4281 16 8 3.6743 2.9330 2.4354 17 8 4.4202 4.9612 1.1794 18 6 6.1341 3.1599 1.7755 19 6 6.7616 2.1472 1.0737 20 6 8.0791 1.8310 1.3465 21 6 8.7698 2.5277 2.3206 22 6 8.1426 3.5401 3.0220 23 6 8.8954 4.2990 4.0843 24 6 6.8249 3.8567 2.7489 25 6 6.1409 4.9602 3.5141 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8901 32 1 1.6766 1.9563 -0.8899 33 1 3.9337 0.9287 -0.8892 34 1 3.9329 0.9289 0.8907 35 1 3.3985 3.2526 -1.9441 36 1 4.1302 4.6230 -1.0754 37 1 5.3117 5.0307 -4.5399 38 1 6.2233 1.6060 0.3097 39 1 8.5690 1.0397 0.7986 40 1 9.7994 2.2808 2.5335 41 1 9.3863 5.1623 3.6350 42 1 8.1992 4.6359 4.8524 43 1 9.6451 3.6479 4.5337 44 1 6.3683 5.9196 3.0493 45 1 5.0632 4.7969 3.5019 46 1 6.4964 4.9623 4.5445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260994193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:05 Heat of formation + Delta-G solvation = -70.190152 kcal Electronic energy + Delta-G solvation = -26959.365372 eV Core-core repulsion = 23361.242746 eV Total energy + Delta-G solvation = -3598.122626 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.38326 -36.80489 -36.44000 -35.29307 -34.12257 -33.23448 -32.40302 -32.20661 -28.84183 -27.69495 -26.51121 -26.28198 -23.42219 -22.69055 -22.06810 -20.80152 -20.72687 -18.22607 -17.03182 -16.94084 -16.24043 -15.71983 -15.59360 -15.38616 -14.85599 -14.54201 -14.24240 -13.99589 -13.68844 -13.57029 -12.94797 -12.91643 -12.73830 -12.65230 -12.53146 -12.28183 -12.03051 -12.00085 -11.81293 -11.78522 -11.42639 -11.38857 -11.31364 -11.17064 -10.98978 -10.91820 -10.78719 -10.68816 -10.44161 -10.25984 -10.20677 -9.93959 -9.71483 -8.94761 -8.49494 -8.41790 -8.08638 -6.11682 -4.18085 1.07222 1.16597 1.50752 3.25158 3.30894 3.31914 3.53925 3.71477 4.24364 4.36231 4.76238 4.90327 5.00004 5.10077 5.11944 5.20541 5.23235 5.29422 5.32396 5.37662 5.45283 5.49395 5.55020 5.68037 5.72067 5.81584 5.89182 5.91620 5.93682 5.97311 6.06253 6.09182 6.21442 6.27670 6.33828 6.35896 6.41670 6.52148 6.59172 6.69780 6.70839 7.09739 7.31679 7.40919 7.61817 7.84548 8.12655 8.84501 9.47856 10.96512 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008286 B = 0.006668 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.382398 B = 4198.097770 C = 6259.282490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.128 3.872 5 N -0.983 5.983 6 C 0.244 3.756 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.890 3.110 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 S 2.690 3.310 16 O -0.977 6.977 17 O -0.955 6.955 18 C -0.655 4.655 19 C -0.016 4.016 20 C -0.144 4.144 21 C -0.073 4.073 22 C -0.115 4.115 23 C -0.114 4.114 24 C 0.009 3.991 25 C -0.140 4.140 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.265 0.735 38 H 0.143 0.857 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.004 -6.361 11.516 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.002 3.998 5 N -0.822 5.822 6 C 0.123 3.877 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.717 3.283 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.201 1.201 15 S 2.779 3.221 16 O -0.967 6.967 17 O -0.945 6.945 18 C -0.740 4.740 19 C -0.035 4.035 20 C -0.162 4.162 21 C -0.091 4.091 22 C -0.115 4.115 23 C -0.170 4.170 24 C 0.008 3.992 25 C -0.196 4.196 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.160 0.840 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.464 -5.712 11.842 13.229 hybrid contribution 1.801 -0.545 -0.914 2.092 sum 3.265 -6.257 10.927 13.008 Atomic orbital electron populations 1.21760 0.96162 1.01052 1.01865 1.21451 0.95672 0.96962 1.01868 1.22071 0.96195 0.96732 1.02988 1.21193 0.93671 0.82575 1.02404 1.57369 1.77968 1.23228 1.23685 1.19277 0.97444 0.92517 0.78498 1.21566 1.02313 1.28388 1.06103 0.91821 1.24907 0.97054 0.94762 0.96887 1.69916 1.35914 1.29666 1.17100 0.86685 0.84381 0.78497 0.78690 1.20128 1.21106 1.20115 1.02084 0.73681 0.73784 0.72556 1.93542 1.67522 1.77683 1.57976 1.93569 1.86549 1.29498 1.84870 1.31027 1.27452 1.07896 1.07624 1.21040 0.95071 0.92935 0.94445 1.21200 0.95004 1.01160 0.98885 1.21175 0.99137 0.94250 0.94570 1.19737 0.93940 0.98319 0.99541 1.20825 0.99692 0.99802 0.96701 1.19216 0.93471 0.93721 0.92799 1.21199 0.99789 0.98063 1.00549 0.93170 0.92838 0.92725 0.91878 0.92106 0.91567 0.91084 0.89771 0.91689 0.93842 0.92816 0.92518 0.83969 0.85500 0.85828 0.91037 0.91124 0.91675 0.88670 0.92240 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.53 5.93 -26.73 -0.16 -1.69 16 3 C -0.14 -2.20 5.54 -26.73 -0.15 -2.35 16 4 C 0.13 2.17 4.55 -4.04 -0.02 2.16 16 5 N -0.98 -20.16 1.92 -115.66 -0.22 -20.39 16 6 C 0.24 5.97 5.42 -5.19 -0.03 5.94 16 7 C -0.54 -14.08 9.38 -34.44 -0.32 -14.41 16 8 H 0.06 1.55 5.52 -52.49 -0.29 1.26 16 9 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 11 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 S 2.69 55.90 4.19 -107.50 -0.45 55.44 16 16 O -0.98 -20.43 16.81 -57.17 -0.96 -21.39 16 17 O -0.95 -22.46 15.23 -57.17 -0.87 -23.33 16 18 C -0.66 -12.59 5.83 -39.58 -0.23 -12.82 16 19 C -0.02 -0.29 8.75 -39.58 -0.35 -0.64 16 20 C -0.14 -2.22 10.05 -39.58 -0.40 -2.62 16 21 C -0.07 -1.03 9.70 -39.58 -0.38 -1.42 16 22 C -0.11 -1.69 5.88 -104.63 -0.62 -2.31 16 23 C -0.11 -1.22 9.60 36.01 0.35 -0.87 16 24 C 0.01 0.16 5.88 -104.63 -0.61 -0.45 16 25 C -0.14 -2.14 8.52 36.00 0.31 -1.83 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 34 H 0.06 0.99 7.70 -51.93 -0.40 0.59 16 35 H 0.04 1.09 8.11 -51.93 -0.42 0.66 16 36 H 0.05 1.46 6.89 -51.93 -0.36 1.10 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.14 2.47 5.31 -52.49 -0.28 2.19 16 39 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.67 6.04 -51.93 -0.31 0.36 16 43 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 45 H 0.06 0.98 6.03 -51.93 -0.31 0.66 16 46 H 0.08 0.97 6.19 -51.93 -0.32 0.65 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -31.75 378.33 -10.75 -42.49 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.32 Total: 3.18 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: -2.34 Total: -32.92 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.51 Total: -44.92 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.83 Total: -44.72 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 55.90 SS G_CDS: -0.45 Total: 55.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.75 -10.75 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260994193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.695 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds