Wall clock time and date at job start Tue Mar 31 2020 15:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46856 * 2 1 4 4 C 1.53007 * 109.47193 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47016 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00426 * 275.11915 * 5 4 3 7 7 C 1.50701 * 109.47199 * 275.00490 * 6 5 4 8 8 H 1.07996 * 120.00251 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99823 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99653 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 119.99771 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47241 * 60.00224 * 11 9 7 13 13 H 1.48500 * 109.47386 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47515 * 300.00189 * 11 9 7 15 15 S 1.65597 * 119.99907 * 95.12429 * 5 4 3 16 16 O 1.42104 * 106.39963 * 333.28420 * 15 5 4 17 17 O 1.42092 * 106.40543 * 200.36256 * 15 5 4 18 18 C 1.76203 * 107.22044 * 86.81978 * 15 5 4 19 19 C 1.38265 * 119.99883 * 346.38900 * 18 15 5 20 20 C 1.38211 * 119.99700 * 180.02562 * 19 18 15 21 21 C 1.38255 * 120.00195 * 359.96746 * 20 19 18 22 22 C 1.38215 * 119.99878 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.99365 * 179.97438 * 22 21 20 24 24 C 1.38214 * 120.00162 * 166.35528 * 18 15 5 25 25 C 1.50696 * 119.99872 * 0.05363 * 24 18 15 26 26 H 1.09003 * 109.46661 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47223 * 299.99990 * 1 2 3 28 28 H 1.08995 * 109.47454 * 60.00084 * 1 2 3 29 29 H 1.09000 * 109.47727 * 239.99900 * 2 1 3 30 30 H 1.09003 * 109.47204 * 119.99638 * 2 1 3 31 31 H 1.09006 * 109.47002 * 60.00170 * 3 2 1 32 32 H 1.08990 * 109.47246 * 299.99779 * 3 2 1 33 33 H 1.09006 * 109.46620 * 60.00411 * 4 3 2 34 34 H 1.08994 * 109.47094 * 300.00746 * 4 3 2 35 35 H 1.09002 * 109.46747 * 35.00329 * 6 5 4 36 36 H 1.08994 * 109.46980 * 154.99720 * 6 5 4 37 37 H 0.97002 * 119.99303 * 179.97438 * 10 9 7 38 38 H 1.07995 * 119.99778 * 0.26837 * 19 18 15 39 39 H 1.07998 * 119.99478 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.99878 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47306 * 90.00002 * 23 22 21 42 42 H 1.09005 * 109.46830 * 209.99467 * 23 22 21 43 43 H 1.08994 * 109.47518 * 329.99591 * 23 22 21 44 44 H 1.09005 * 109.46836 * 264.30347 * 25 24 18 45 45 H 1.09001 * 109.47326 * 24.29941 * 25 24 18 46 46 H 1.09000 * 109.47459 * 144.30149 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.1961 3.5515 -1.2640 7 6 5.5317 3.2318 -1.8845 8 1 6.2101 2.5546 -1.3870 9 6 5.8875 3.8038 -3.0876 10 7 5.0612 4.6280 -3.6937 11 14 7.5432 3.4080 -3.8564 12 1 7.6337 1.9480 -4.1127 13 1 7.6825 4.1445 -5.1384 14 1 8.6295 3.8161 -2.9299 15 16 4.4543 3.5626 1.4281 16 8 3.6743 2.9330 2.4354 17 8 4.4202 4.9612 1.1794 18 6 6.1341 3.1599 1.7755 19 6 6.7616 2.1472 1.0737 20 6 8.0791 1.8310 1.3465 21 6 8.7698 2.5277 2.3206 22 6 8.1426 3.5401 3.0220 23 6 8.8954 4.2990 4.0843 24 6 6.8249 3.8567 2.7489 25 6 6.1409 4.9602 3.5141 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8901 32 1 1.6766 1.9563 -0.8899 33 1 3.9337 0.9287 -0.8892 34 1 3.9329 0.9289 0.8907 35 1 3.3985 3.2526 -1.9441 36 1 4.1302 4.6230 -1.0754 37 1 5.3117 5.0307 -4.5399 38 1 6.2233 1.6060 0.3097 39 1 8.5690 1.0397 0.7986 40 1 9.7994 2.2808 2.5335 41 1 9.3863 5.1623 3.6350 42 1 8.1992 4.6359 4.8524 43 1 9.6451 3.6479 4.5337 44 1 6.3683 5.9196 3.0493 45 1 5.0632 4.7969 3.5019 46 1 6.4964 4.9623 4.5445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260994193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:04 Heat of formation + Delta-G solvation = -88.382341 kcal Electronic energy + Delta-G solvation = -26960.154244 eV Core-core repulsion = 23361.242746 eV Total energy + Delta-G solvation = -3598.911498 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56617 -38.37338 -38.10587 -36.99441 -35.54804 -34.50602 -34.15400 -33.38169 -30.33639 -28.84263 -28.21036 -27.38951 -25.06295 -23.97802 -23.60731 -22.02099 -21.89749 -19.82166 -18.71331 -18.53295 -18.01129 -17.31299 -16.87333 -16.65994 -16.38448 -16.04366 -15.51091 -15.26362 -15.12032 -14.85390 -14.32658 -14.25098 -14.06472 -13.81501 -13.70625 -13.61768 -13.54155 -13.24256 -13.22640 -13.03791 -12.96649 -12.94897 -12.88357 -12.82200 -12.53460 -12.30377 -12.21311 -11.98743 -11.86772 -11.81346 -11.65574 -11.43570 -11.33333 -10.57073 -10.18477 -9.81510 -9.58805 -8.17165 -6.30338 -0.51948 -0.12021 0.30380 1.40823 1.43383 1.50043 1.93787 2.41471 2.49884 2.66578 3.14955 3.58036 3.63572 3.75277 3.87149 3.94696 4.04108 4.05151 4.21887 4.27242 4.31544 4.43529 4.45668 4.55641 4.62889 4.70156 4.74119 4.81568 4.86152 4.87863 4.97502 4.99560 5.08571 5.12182 5.13337 5.25051 5.27881 5.32859 5.34768 5.38097 5.46761 5.51526 5.53547 5.74535 5.90055 5.95065 6.08706 6.80500 7.39331 8.91282 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008286 B = 0.006668 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.382398 B = 4198.097770 C = 6259.282490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.140 4.140 4 C 0.120 3.880 5 N -0.986 5.986 6 C 0.260 3.740 7 C -0.548 4.548 8 H 0.079 0.921 9 C 0.012 3.988 10 N -0.928 5.928 11 Si 0.954 3.046 12 H -0.259 1.259 13 H -0.287 1.287 14 H -0.272 1.272 15 S 2.694 3.306 16 O -0.987 6.987 17 O -0.995 6.995 18 C -0.678 4.678 19 C -0.040 4.040 20 C -0.148 4.148 21 C -0.067 4.067 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.016 4.016 25 C -0.145 4.145 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.030 0.970 36 H 0.017 0.983 37 H 0.265 0.735 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.037 0.963 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 -8.364 12.735 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.179 4.179 4 C -0.005 4.005 5 N -0.824 5.824 6 C 0.137 3.863 7 C -0.587 4.587 8 H 0.097 0.903 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.779 3.221 12 H -0.183 1.183 13 H -0.212 1.212 14 H -0.198 1.198 15 S 2.788 3.212 16 O -0.977 6.977 17 O -0.985 6.985 18 C -0.767 4.767 19 C -0.059 4.059 20 C -0.166 4.166 21 C -0.085 4.085 22 C -0.115 4.115 23 C -0.170 4.170 24 C -0.018 4.018 25 C -0.201 4.201 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.156 0.844 39 H 0.174 0.826 40 H 0.184 0.816 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.056 0.944 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.360 -7.735 13.070 15.801 hybrid contribution 0.924 0.069 -1.190 1.508 sum 5.285 -7.667 11.881 15.095 Atomic orbital electron populations 1.21763 0.95119 1.02324 1.01610 1.21447 0.96596 0.94589 1.02899 1.22065 0.95327 0.98897 1.01647 1.21477 0.94553 0.80862 1.03567 1.57200 1.78796 1.24353 1.22079 1.18803 0.96919 0.90872 0.79707 1.21943 1.02750 1.27988 1.05977 0.90325 1.25788 1.00655 0.94699 0.97623 1.70060 1.37987 1.31095 1.17598 0.85666 0.79833 0.79104 0.77544 1.18291 1.21219 1.19759 1.01580 0.74580 0.72854 0.72222 1.93509 1.68785 1.77498 1.57948 1.93509 1.87597 1.32079 1.85337 1.30637 1.26026 1.10101 1.09964 1.21165 0.96610 0.93212 0.94935 1.21608 0.93940 1.01805 0.99273 1.21730 1.00842 0.92887 0.93027 1.20254 0.92924 0.98314 1.00015 1.20945 1.00150 1.00160 0.95777 1.19599 0.95050 0.94253 0.92905 1.21313 0.98515 0.97550 1.02756 0.91092 0.93094 0.93083 0.90883 0.90982 0.92893 0.92476 0.89117 0.89833 0.95193 0.96506 0.92597 0.84428 0.82645 0.81595 0.90153 0.90109 0.88989 0.88835 0.94400 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.91 71.98 0.71 -2.58 16 2 C -0.12 -2.87 5.93 30.59 0.18 -2.69 16 3 C -0.14 -4.51 5.54 30.60 0.17 -4.34 16 4 C 0.12 4.18 4.55 86.38 0.39 4.57 16 5 N -0.99 -42.25 1.92 -519.85 -1.00 -43.25 16 6 C 0.26 13.41 5.42 85.63 0.46 13.87 16 7 C -0.55 -28.85 9.38 25.60 0.24 -28.61 16 8 H 0.08 3.82 5.52 -2.91 -0.02 3.80 16 9 C 0.01 0.65 5.46 84.66 0.46 1.11 16 10 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 11 Si 0.95 42.31 29.54 68.60 2.03 44.33 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 13 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 15 S 2.69 117.22 4.19 -56.49 -0.24 116.98 16 16 O -0.99 -42.91 16.81 -128.00 -2.15 -45.06 16 17 O -0.99 -49.98 15.23 -128.00 -1.95 -51.93 16 18 C -0.68 -26.23 5.83 22.27 0.13 -26.10 16 19 C -0.04 -1.41 8.75 22.27 0.19 -1.21 16 20 C -0.15 -4.11 10.05 22.27 0.22 -3.89 16 21 C -0.07 -1.62 9.70 22.27 0.22 -1.40 16 22 C -0.11 -3.02 5.88 -19.87 -0.12 -3.13 16 23 C -0.11 -1.96 9.60 71.24 0.68 -1.28 16 24 C -0.02 -0.55 5.88 -19.87 -0.12 -0.67 16 25 C -0.15 -4.42 8.52 71.23 0.61 -3.81 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.82 8.09 -2.38 -0.02 1.80 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 3.00 8.11 -2.38 -0.02 2.98 16 34 H 0.08 2.57 7.70 -2.39 -0.02 2.55 16 35 H 0.03 1.60 8.11 -2.39 -0.02 1.58 16 36 H 0.02 0.99 6.89 -2.39 -0.02 0.97 16 37 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.14 4.75 5.31 -2.91 -0.02 4.74 16 39 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 40 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.22 6.04 -2.38 -0.01 1.21 16 43 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16 44 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 45 H 0.04 1.29 6.03 -2.39 -0.01 1.27 16 46 H 0.12 2.61 6.19 -2.39 -0.01 2.59 16 Total: -1.00 -71.56 378.33 2.38 -69.18 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.96 Total: 23.99 kcal Atomic # 6 Polarization: -64.60 SS G_CDS: 4.45 Total: -60.16 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -0.71 Total: -97.33 kcal Atomic # 8 Polarization: -92.89 SS G_CDS: -4.10 Total: -97.00 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 117.22 SS G_CDS: -0.24 Total: 116.98 kcal Total: -71.56 2.38 -69.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260994193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.203 kcal (2) G-P(sol) polarization free energy of solvation -71.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds