Wall clock time and date at job start Tue Mar 31 2020 14:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 C 1.50701 * 109.46991 * 119.99970 * 2 1 3 5 5 C 1.38391 * 119.92518 * 299.98025 * 4 2 1 6 6 C 1.38340 * 120.29726 * 180.02562 * 5 4 2 7 7 C 1.37980 * 120.14109 * 359.95169 * 6 5 4 8 8 C 1.39567 * 119.85483 * 0.04650 * 7 6 5 9 9 C 1.47813 * 120.14639 * 179.97438 * 8 7 6 10 10 O 1.21561 * 120.00034 * 179.97438 * 9 8 7 11 11 N 1.34773 * 119.99882 * 359.97438 * 9 8 7 12 12 C 1.39846 * 120.00060 * 175.48158 * 11 9 8 13 13 C 1.38983 * 120.03694 * 214.86126 * 12 11 9 14 14 C 1.38160 * 120.06207 * 179.71596 * 13 12 11 15 15 C 1.38165 * 120.13920 * 0.55849 * 14 13 12 16 16 C 1.38905 * 120.07791 * 359.71690 * 15 14 13 17 17 O 1.35753 * 120.03598 * 179.97438 * 16 15 14 18 18 C 1.34828 * 116.99901 * 5.36938 * 17 16 15 19 19 H 1.08001 * 120.00187 * 354.96867 * 18 17 16 20 20 C 1.38659 * 120.00332 * 174.96126 * 18 17 16 21 21 N 1.31558 * 119.99691 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00173 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47016 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47030 * 120.00364 * 22 20 18 25 25 H 1.48502 * 109.47156 * 240.00455 * 22 20 18 26 26 C 1.38728 * 120.04061 * 35.13203 * 12 11 9 27 27 C 1.37929 * 119.92742 * 119.99956 * 4 2 1 28 28 H 1.08996 * 109.47263 * 300.00273 * 1 2 3 29 29 H 1.09000 * 109.47064 * 59.99946 * 1 2 3 30 30 H 1.09001 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47263 * 239.99727 * 2 1 3 32 32 H 1.08990 * 109.47250 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47112 * 300.00024 * 3 2 1 34 34 H 1.09004 * 109.46568 * 59.99714 * 3 2 1 35 35 H 1.08002 * 119.85019 * 0.02562 * 5 4 2 36 36 H 1.07991 * 119.92679 * 179.97438 * 6 5 4 37 37 H 1.07999 * 120.07101 * 180.02562 * 7 6 5 38 38 H 0.97000 * 120.00409 * 355.47867 * 11 9 8 39 39 H 1.07994 * 119.97146 * 359.97438 * 13 12 11 40 40 H 1.08006 * 119.92769 * 180.25416 * 14 13 12 41 41 H 1.08002 * 119.96202 * 179.74591 * 15 14 13 42 42 H 0.97001 * 119.99772 * 179.97438 * 21 20 18 43 43 H 1.08008 * 120.07064 * 359.97438 * 26 12 11 44 44 H 1.08000 * 120.07491 * 359.70391 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6974 -0.2360 2.4866 6 6 2.1547 -0.8818 3.6214 7 6 2.9478 -2.0051 3.5071 8 6 3.2893 -2.4888 2.2433 9 6 4.1391 -3.6913 2.1134 10 8 4.4346 -4.1106 1.0113 11 7 4.5864 -4.3227 3.2168 12 6 5.3107 -5.5129 3.0962 13 6 5.1686 -6.5135 4.0503 14 6 5.8795 -7.6919 3.9285 15 6 6.7421 -7.8749 2.8648 16 6 6.8928 -6.8765 1.9110 17 8 7.7410 -7.0570 0.8665 18 6 8.3218 -8.2684 0.7520 19 1 8.1683 -9.0154 1.5168 20 6 9.1163 -8.5553 -0.3476 21 7 9.3036 -7.6453 -1.2791 22 14 9.9204 -10.2338 -0.5065 23 1 9.5548 -11.0707 0.6644 24 1 9.4496 -10.8924 -1.7515 25 1 11.3958 -10.0729 -0.5592 26 6 6.1760 -5.6940 2.0271 27 6 2.8252 -1.8317 1.1022 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.0761 0.6424 2.5815 36 1 1.8900 -0.5062 4.5986 37 1 3.3039 -2.5086 4.3937 38 1 4.4059 -3.9517 4.0947 39 1 4.4988 -6.3715 4.8854 40 1 5.7643 -8.4697 4.6690 41 1 7.2994 -8.7956 2.7746 42 1 9.8596 -7.8458 -2.0482 43 1 6.2912 -4.9164 1.2864 44 1 3.0822 -2.2035 0.1213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264602580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:10 Heat of formation + Delta-G solvation = -16.994223 kcal Electronic energy + Delta-G solvation = -25841.087396 eV Core-core repulsion = 22109.827567 eV Total energy + Delta-G solvation = -3731.259828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59411 -39.38315 -38.41609 -36.48990 -35.61471 -34.10585 -32.22149 -31.39517 -30.33055 -29.33933 -28.27093 -27.44235 -25.32019 -24.47623 -23.25637 -22.16604 -21.49187 -21.00293 -19.56816 -18.34049 -17.69107 -17.01955 -16.30926 -15.90509 -15.42074 -15.10267 -15.03050 -14.96386 -14.25228 -14.20967 -14.03411 -13.88850 -13.80457 -13.61673 -13.50433 -12.86301 -12.67778 -12.47628 -12.42718 -12.29558 -11.80867 -11.73030 -11.52325 -11.43519 -11.21557 -11.08595 -11.01019 -10.95145 -10.76621 -10.41505 -9.83460 -9.67681 -9.19412 -9.14188 -9.00002 -8.79508 -7.68518 -7.16634 -6.39501 -3.98600 0.66659 1.12261 2.09377 2.36254 2.91197 3.15404 3.15914 3.20698 3.23195 3.72454 4.00901 4.30775 4.44995 4.55658 4.64240 4.76765 4.83513 4.89162 5.01134 5.12527 5.14990 5.23404 5.31146 5.35898 5.51141 5.51445 5.62719 5.64195 5.66557 5.80308 5.84106 5.89421 5.93877 6.09354 6.11237 6.14798 6.23963 6.33153 6.41045 6.64796 6.71051 6.90495 7.05653 7.10460 7.36873 7.49982 7.69656 7.80970 8.05386 8.33975 9.05408 9.76925 10.78503 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.002466 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.118961 B =11349.652470 C =12616.387314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.084 4.084 5 C -0.093 4.093 6 C -0.125 4.125 7 C -0.092 4.092 8 C -0.124 4.124 9 C 0.549 3.451 10 O -0.504 6.504 11 N -0.664 5.664 12 C 0.174 3.826 13 C -0.235 4.235 14 C -0.059 4.059 15 C -0.245 4.245 16 C 0.166 3.834 17 O -0.174 6.174 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.186 4.186 27 C -0.057 4.057 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.404 0.596 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.269 0.731 43 H 0.134 0.866 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.290 15.265 9.599 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 C -0.201 4.201 4 C -0.084 4.084 5 C -0.111 4.111 6 C -0.143 4.143 7 C -0.111 4.111 8 C -0.127 4.127 9 C 0.336 3.664 10 O -0.379 6.379 11 N -0.309 5.309 12 C 0.081 3.919 13 C -0.256 4.256 14 C -0.078 4.078 15 C -0.264 4.264 16 C 0.112 3.888 17 O -0.077 6.077 18 C -0.467 4.467 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.767 3.233 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.207 4.207 27 C -0.076 4.076 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.240 0.760 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.146 0.854 42 H 0.079 0.921 43 H 0.152 0.848 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.896 15.158 8.371 23.506 hybrid contribution 0.298 -0.753 0.535 0.970 sum -15.599 14.406 8.906 23.025 Atomic orbital electron populations 1.21862 0.94169 1.02196 1.01899 1.20165 0.96050 0.96149 0.95407 1.21862 1.01507 0.94888 1.01892 1.19850 0.97890 0.95643 0.95060 1.21162 0.98727 0.99338 0.91867 1.21052 0.98543 0.95911 0.98806 1.21305 0.97277 0.96315 0.96207 1.19936 1.01364 0.96948 0.94442 1.18377 0.80022 0.83421 0.84544 1.90869 1.56236 1.65098 1.25652 1.43251 1.54326 1.24003 1.09343 1.17167 0.92715 0.85484 0.96547 1.20269 1.07943 0.95002 1.02398 1.20500 0.94957 0.95684 0.96612 1.21185 1.05828 1.01691 0.97740 1.19133 0.88807 0.92776 0.88112 1.83993 1.49642 1.34208 1.39811 1.21398 1.28341 0.89059 1.07952 0.88930 1.25312 0.97145 0.99581 0.94573 1.70068 1.36278 1.33512 1.09640 0.85638 0.78780 0.80199 0.78730 1.19091 1.20158 1.20177 1.20180 0.99838 0.99136 1.01561 1.21245 0.94245 0.93298 0.98774 0.92520 0.92240 0.92373 0.89967 0.92315 0.92230 0.92527 0.85761 0.85423 0.85648 0.75955 0.87381 0.87006 0.85420 0.92085 0.84809 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.01 37.16 0.33 -0.64 16 2 C -0.06 -0.47 3.09 -91.77 -0.28 -0.76 16 3 C -0.14 -0.99 9.01 37.16 0.33 -0.66 16 4 C -0.08 -0.82 4.78 -104.68 -0.50 -1.32 16 5 C -0.09 -0.76 8.71 -39.49 -0.34 -1.10 16 6 C -0.13 -1.01 10.03 -39.64 -0.40 -1.40 16 7 C -0.09 -0.89 9.54 -39.18 -0.37 -1.26 16 8 C -0.12 -1.60 5.87 -104.97 -0.62 -2.22 16 9 C 0.55 9.18 7.61 -12.35 -0.09 9.08 16 10 O -0.50 -10.78 13.78 5.31 0.07 -10.71 16 11 N -0.66 -10.20 5.28 -10.74 -0.06 -10.25 16 12 C 0.17 3.35 6.29 -83.74 -0.53 2.83 16 13 C -0.24 -4.11 9.96 -39.33 -0.39 -4.50 16 14 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 15 C -0.24 -5.48 9.17 -39.36 -0.36 -5.84 16 16 C 0.17 4.27 6.64 -39.14 -0.26 4.01 16 17 O -0.17 -5.21 9.76 0.05 0.00 -5.21 16 18 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 19 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 22 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 C -0.19 -4.40 8.64 -39.20 -0.34 -4.74 16 27 C -0.06 -0.70 9.21 -39.18 -0.36 -1.06 16 28 H 0.06 0.34 7.38 -51.93 -0.38 -0.05 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.34 7.38 -51.93 -0.38 -0.04 16 35 H 0.12 0.75 7.08 -52.49 -0.37 0.38 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.90 6.41 -52.49 -0.34 0.57 16 38 H 0.40 4.46 6.87 -40.82 -0.28 4.18 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.13 3.40 6.22 -52.48 -0.33 3.07 16 44 H 0.14 1.83 7.53 -52.49 -0.40 1.43 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -34.72 368.57 -8.62 -43.34 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.55 Total: 7.64 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -4.38 Total: -21.05 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.70 Total: -35.55 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.07 Total: -15.91 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.72 -8.62 -43.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264602580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.346 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds