Wall clock time and date at job start Tue Mar 31 2020 14:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 C 1.50701 * 109.46991 * 119.99970 * 2 1 3 5 5 C 1.38391 * 119.92518 * 299.98025 * 4 2 1 6 6 C 1.38340 * 120.29726 * 180.02562 * 5 4 2 7 7 C 1.37980 * 120.14109 * 359.95169 * 6 5 4 8 8 C 1.39567 * 119.85483 * 0.04650 * 7 6 5 9 9 C 1.47813 * 120.14639 * 179.97438 * 8 7 6 10 10 O 1.21561 * 120.00034 * 179.97438 * 9 8 7 11 11 N 1.34773 * 119.99882 * 359.97438 * 9 8 7 12 12 C 1.39846 * 120.00060 * 175.48158 * 11 9 8 13 13 C 1.38983 * 120.03694 * 214.86126 * 12 11 9 14 14 C 1.38160 * 120.06207 * 179.71596 * 13 12 11 15 15 C 1.38165 * 120.13920 * 0.55849 * 14 13 12 16 16 C 1.38905 * 120.07791 * 359.71690 * 15 14 13 17 17 O 1.35753 * 120.03598 * 179.97438 * 16 15 14 18 18 C 1.34828 * 116.99901 * 5.36938 * 17 16 15 19 19 H 1.08001 * 120.00187 * 354.96867 * 18 17 16 20 20 C 1.38659 * 120.00332 * 174.96126 * 18 17 16 21 21 N 1.31558 * 119.99691 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00173 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47016 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47030 * 120.00364 * 22 20 18 25 25 H 1.48502 * 109.47156 * 240.00455 * 22 20 18 26 26 C 1.38728 * 120.04061 * 35.13203 * 12 11 9 27 27 C 1.37929 * 119.92742 * 119.99956 * 4 2 1 28 28 H 1.08996 * 109.47263 * 300.00273 * 1 2 3 29 29 H 1.09000 * 109.47064 * 59.99946 * 1 2 3 30 30 H 1.09001 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47263 * 239.99727 * 2 1 3 32 32 H 1.08990 * 109.47250 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47112 * 300.00024 * 3 2 1 34 34 H 1.09004 * 109.46568 * 59.99714 * 3 2 1 35 35 H 1.08002 * 119.85019 * 0.02562 * 5 4 2 36 36 H 1.07991 * 119.92679 * 179.97438 * 6 5 4 37 37 H 1.07999 * 120.07101 * 180.02562 * 7 6 5 38 38 H 0.97000 * 120.00409 * 355.47867 * 11 9 8 39 39 H 1.07994 * 119.97146 * 359.97438 * 13 12 11 40 40 H 1.08006 * 119.92769 * 180.25416 * 14 13 12 41 41 H 1.08002 * 119.96202 * 179.74591 * 15 14 13 42 42 H 0.97001 * 119.99772 * 179.97438 * 21 20 18 43 43 H 1.08008 * 120.07064 * 359.97438 * 26 12 11 44 44 H 1.08000 * 120.07491 * 359.70391 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6974 -0.2360 2.4866 6 6 2.1547 -0.8818 3.6214 7 6 2.9478 -2.0051 3.5071 8 6 3.2893 -2.4888 2.2433 9 6 4.1391 -3.6913 2.1134 10 8 4.4346 -4.1106 1.0113 11 7 4.5864 -4.3227 3.2168 12 6 5.3107 -5.5129 3.0962 13 6 5.1686 -6.5135 4.0503 14 6 5.8795 -7.6919 3.9285 15 6 6.7421 -7.8749 2.8648 16 6 6.8928 -6.8765 1.9110 17 8 7.7410 -7.0570 0.8665 18 6 8.3218 -8.2684 0.7520 19 1 8.1683 -9.0154 1.5168 20 6 9.1163 -8.5553 -0.3476 21 7 9.3036 -7.6453 -1.2791 22 14 9.9204 -10.2338 -0.5065 23 1 9.5548 -11.0707 0.6644 24 1 9.4496 -10.8924 -1.7515 25 1 11.3958 -10.0729 -0.5592 26 6 6.1760 -5.6940 2.0271 27 6 2.8252 -1.8317 1.1022 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.0761 0.6424 2.5815 36 1 1.8900 -0.5062 4.5986 37 1 3.3039 -2.5086 4.3937 38 1 4.4059 -3.9517 4.0947 39 1 4.4988 -6.3715 4.8854 40 1 5.7643 -8.4697 4.6690 41 1 7.2994 -8.7956 2.7746 42 1 9.8596 -7.8458 -2.0482 43 1 6.2912 -4.9164 1.2864 44 1 3.0822 -2.2035 0.1213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264602580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:09 Heat of formation + Delta-G solvation = -38.966293 kcal Electronic energy + Delta-G solvation = -25842.040176 eV Core-core repulsion = 22109.827567 eV Total energy + Delta-G solvation = -3732.212609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.86139 -40.69212 -39.88681 -38.21023 -36.38305 -35.59232 -34.28062 -32.32215 -31.35465 -30.89075 -29.75138 -27.98143 -27.36980 -25.55973 -24.21012 -23.52524 -22.91448 -22.23886 -20.68703 -20.05224 -19.19377 -18.46441 -17.43209 -17.14069 -16.79228 -16.53841 -16.29562 -16.18027 -15.89822 -15.66629 -15.51688 -15.02557 -14.72185 -14.60042 -14.50213 -14.36178 -14.25177 -13.62660 -13.37067 -13.21441 -13.08948 -12.94243 -12.90041 -12.72149 -12.62865 -12.38978 -12.09164 -12.05734 -11.79648 -11.59814 -11.45064 -11.34657 -10.85853 -10.79562 -10.00350 -9.76228 -9.37954 -8.91193 -8.48074 -6.18014 -0.26831 0.36120 0.47659 0.67718 1.33333 1.43065 1.53539 1.75812 1.90041 2.18085 2.76850 2.84876 3.15250 3.36316 3.62351 3.66283 3.86838 4.05513 4.11225 4.15665 4.29790 4.31242 4.33674 4.39071 4.44859 4.51528 4.65705 4.71231 4.80305 4.81917 4.94684 4.98968 5.01775 5.02325 5.09552 5.17804 5.27316 5.28102 5.39158 5.39965 5.41304 5.44224 5.60892 5.61626 5.71298 5.92104 6.01486 6.16681 6.38255 6.95342 7.05962 7.78080 8.76167 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.002466 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.118961 B =11349.652470 C =12616.387314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.141 4.141 4 C -0.087 4.087 5 C -0.082 4.082 6 C -0.115 4.115 7 C -0.085 4.085 8 C -0.148 4.148 9 C 0.545 3.455 10 O -0.566 6.566 11 N -0.647 5.647 12 C 0.180 3.820 13 C -0.201 4.201 14 C -0.047 4.047 15 C -0.253 4.253 16 C 0.126 3.874 17 O -0.236 6.236 18 C -0.414 4.414 19 H 0.108 0.892 20 C -0.029 4.029 21 N -0.925 5.925 22 Si 1.026 2.974 23 H -0.246 1.246 24 H -0.270 1.270 25 H -0.267 1.267 26 C -0.215 4.215 27 C -0.084 4.084 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.157 0.843 36 H 0.169 0.831 37 H 0.155 0.845 38 H 0.429 0.571 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.125 0.875 42 H 0.272 0.728 43 H 0.097 0.903 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.233 15.831 14.587 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 C -0.198 4.198 4 C -0.087 4.087 5 C -0.100 4.100 6 C -0.133 4.133 7 C -0.104 4.104 8 C -0.151 4.151 9 C 0.335 3.665 10 O -0.445 6.445 11 N -0.294 5.294 12 C 0.086 3.914 13 C -0.222 4.222 14 C -0.066 4.066 15 C -0.273 4.273 16 C 0.075 3.925 17 O -0.143 6.143 18 C -0.490 4.490 19 H 0.125 0.875 20 C -0.226 4.226 21 N -0.564 5.564 22 Si 0.844 3.156 23 H -0.169 1.169 24 H -0.195 1.195 25 H -0.192 1.192 26 C -0.237 4.237 27 C -0.103 4.103 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.175 0.825 36 H 0.187 0.813 37 H 0.172 0.828 38 H 0.271 0.729 39 H 0.185 0.815 40 H 0.181 0.819 41 H 0.143 0.857 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.895 15.765 13.459 28.048 hybrid contribution 0.919 -0.687 -0.780 1.387 sum -17.976 15.078 12.679 26.669 Atomic orbital electron populations 1.21837 0.92738 1.01864 1.03253 1.20211 0.97173 0.96617 0.94131 1.21844 1.00612 0.94065 1.03266 1.20023 0.97190 0.94650 0.96811 1.21596 0.97756 0.99738 0.90924 1.21531 0.96725 0.94533 1.00497 1.21616 0.96752 0.96755 0.95232 1.19714 1.02724 0.96267 0.96377 1.19137 0.79524 0.84034 0.83776 1.90854 1.58560 1.66985 1.28100 1.43124 1.53072 1.22780 1.10462 1.17348 0.91323 0.87447 0.95316 1.20918 1.06250 0.92889 1.02112 1.21067 0.92606 0.97226 0.95663 1.21349 1.06954 1.00643 0.98318 1.19669 0.89628 0.94654 0.88593 1.83962 1.52374 1.35333 1.42610 1.21980 1.28708 0.89408 1.08862 0.87466 1.26761 0.97604 1.04480 0.93735 1.70241 1.38540 1.36625 1.10980 0.84444 0.77610 0.74145 0.79395 1.16861 1.19522 1.19194 1.20191 1.02131 0.98275 1.03065 1.21195 0.96272 0.95143 0.97668 0.90777 0.91272 0.93536 0.91862 0.93728 0.91241 0.90767 0.82496 0.81328 0.82759 0.72940 0.81544 0.81901 0.85696 0.91886 0.88472 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.01 71.98 0.65 -1.02 16 2 C -0.06 -0.99 3.09 -11.54 -0.04 -1.02 16 3 C -0.14 -1.75 9.01 71.98 0.65 -1.10 16 4 C -0.09 -1.62 4.78 -19.90 -0.10 -1.72 16 5 C -0.08 -1.04 8.71 22.33 0.19 -0.85 16 6 C -0.12 -1.30 10.03 22.23 0.22 -1.07 16 7 C -0.09 -1.36 9.54 22.53 0.21 -1.14 16 8 C -0.15 -3.84 5.87 -20.09 -0.12 -3.96 16 9 C 0.54 19.05 7.61 86.78 0.66 19.71 16 10 O -0.57 -26.84 13.78 -3.91 -0.05 -26.89 16 11 N -0.65 -19.13 5.28 -306.18 -1.62 -20.75 16 12 C 0.18 6.81 6.29 38.16 0.24 7.05 16 13 C -0.20 -6.14 9.96 22.43 0.22 -5.91 16 14 C -0.05 -1.57 10.03 22.23 0.22 -1.35 16 15 C -0.25 -11.37 9.17 22.41 0.21 -11.17 16 16 C 0.13 6.89 6.64 22.56 0.15 7.04 16 17 O -0.24 -15.51 9.76 -22.75 -0.22 -15.74 16 18 C -0.41 -25.43 9.49 67.92 0.64 -24.79 16 19 H 0.11 5.93 5.20 -2.91 -0.02 5.92 16 20 C -0.03 -1.74 5.49 84.83 0.47 -1.28 16 21 N -0.93 -60.41 13.67 21.61 0.30 -60.11 16 22 Si 1.03 44.70 29.55 68.60 2.03 46.72 16 23 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 C -0.22 -10.90 8.64 22.51 0.19 -10.71 16 27 C -0.08 -2.22 9.21 22.53 0.21 -2.01 16 28 H 0.07 0.62 7.38 -2.39 -0.02 0.61 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 1.20 7.87 -2.39 -0.02 1.18 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.66 7.38 -2.39 -0.02 0.64 16 35 H 0.16 1.01 7.08 -2.91 -0.02 0.99 16 36 H 0.17 0.63 8.06 -2.92 -0.02 0.61 16 37 H 0.15 1.45 6.41 -2.91 -0.02 1.43 16 38 H 0.43 7.92 6.87 -92.71 -0.64 7.28 16 39 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.13 5.59 5.63 -2.91 -0.02 5.57 16 42 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 43 H 0.10 5.57 6.22 -2.91 -0.02 5.55 16 44 H 0.11 3.35 7.53 -2.91 -0.02 3.33 16 Total: -1.00 -89.49 368.57 5.73 -83.77 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.40 Total: 28.28 kcal Atomic # 6 Polarization: -40.17 SS G_CDS: 4.90 Total: -35.28 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -1.32 Total: -80.86 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.28 Total: -42.63 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -89.49 5.73 -83.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264602580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.799 kcal (2) G-P(sol) polarization free energy of solvation -89.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds