Wall clock time and date at job start Tue Mar 31 2020 13:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35898 * 116.99778 * 2 1 4 4 C 1.38812 * 120.01952 * 359.97438 * 3 2 1 5 5 C 1.38176 * 120.08244 * 179.74531 * 4 3 2 6 6 C 1.38166 * 120.12265 * 359.95751 * 5 4 3 7 7 C 1.38884 * 120.04156 * 359.97438 * 6 5 4 8 8 N 1.39931 * 120.04269 * 180.02562 * 7 6 5 9 9 C 1.34774 * 119.99526 * 21.20654 * 8 7 6 10 10 O 1.21282 * 120.00469 * 4.69003 * 9 8 7 11 11 C 1.50701 * 119.99649 * 184.68982 * 9 8 7 12 12 H 1.08993 * 109.47390 * 60.00151 * 11 9 8 13 13 C 1.50703 * 109.47213 * 299.99942 * 11 9 8 14 14 H 1.07998 * 119.99988 * 123.08962 * 13 11 9 15 15 C 1.37880 * 120.00006 * 303.09272 * 13 11 9 16 16 N 1.31523 * 119.99845 * 4.67693 * 15 13 11 17 17 Si 1.86794 * 120.00093 * 184.67273 * 15 13 11 18 18 H 1.48505 * 109.47045 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47123 * 120.00056 * 17 15 13 20 20 H 1.48502 * 109.47314 * 239.99831 * 17 15 13 21 21 C 1.50707 * 109.46968 * 180.02562 * 11 9 8 22 22 C 1.38228 * 119.99664 * 313.26573 * 21 11 9 23 23 C 1.38238 * 119.99719 * 179.79131 * 22 21 11 24 24 C 1.38238 * 120.00087 * 0.43773 * 23 22 21 25 25 C 1.38239 * 119.99618 * 359.81494 * 24 23 22 26 26 C 1.38231 * 120.00198 * 359.97438 * 25 24 23 27 27 C 1.38580 * 120.01778 * 179.72203 * 3 2 1 28 28 C 1.50700 * 120.06373 * 0.25421 * 27 3 2 29 29 H 1.08998 * 109.46951 * 60.00179 * 1 2 3 30 30 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47304 * 300.00173 * 1 2 3 32 32 H 1.08001 * 119.95784 * 359.72316 * 4 3 2 33 33 H 1.07991 * 119.93366 * 179.97438 * 5 4 3 34 34 H 1.08003 * 119.97388 * 180.02562 * 6 5 4 35 35 H 0.96998 * 119.99674 * 201.20826 * 8 7 6 36 36 H 0.96994 * 119.99666 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.00502 * 0.02562 * 22 21 11 38 38 H 1.07995 * 120.00093 * 180.27714 * 23 22 21 39 39 H 1.07994 * 120.00293 * 179.83106 * 24 23 22 40 40 H 1.07996 * 119.99920 * 179.97438 * 25 24 23 41 41 H 1.07995 * 120.00089 * 179.97438 * 26 25 24 42 42 H 1.08998 * 109.47105 * 89.99794 * 28 27 3 43 43 H 1.08994 * 109.46871 * 209.99963 * 28 27 3 44 44 H 1.08993 * 109.46731 * 330.00017 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9162 3.6072 0.0048 6 6 3.2957 3.6840 0.0115 7 6 4.0568 2.5222 0.0135 8 7 5.4539 2.6000 0.0209 9 6 6.0640 3.7233 0.4482 10 8 5.4065 4.6340 0.9057 11 6 7.5631 3.8476 0.3575 12 1 7.8726 3.7597 -0.6839 13 6 8.2079 2.7524 1.1674 14 1 8.9010 2.0701 0.6978 15 6 7.9130 2.6215 2.5079 16 7 7.0010 3.3924 3.0589 17 14 8.8087 1.3490 3.5413 18 1 9.7790 0.6143 2.6904 19 1 9.5329 2.0287 4.6452 20 1 7.8257 0.3920 4.1098 21 6 7.9895 5.1885 0.8973 22 6 7.3246 6.3348 0.5044 23 6 7.7129 7.5643 1.0029 24 6 8.7720 7.6483 1.8874 25 6 9.4403 6.5024 2.2762 26 6 9.0492 5.2725 1.7811 27 6 3.4299 1.2839 0.0058 28 6 4.2525 0.0212 0.0064 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2118 2.3183 -0.0055 33 1 1.3260 4.5115 0.0039 34 1 3.7824 4.6481 0.0161 35 1 5.9832 1.8455 -0.2815 36 1 6.7938 3.3005 4.0020 37 1 6.4992 6.2696 -0.1891 38 1 7.1906 8.4595 0.6994 39 1 9.0772 8.6091 2.2747 40 1 10.2680 6.5680 2.9668 41 1 9.5715 4.3773 2.0846 42 1 4.4550 -0.2809 -1.0211 43 1 5.1943 0.2015 0.5244 44 1 3.7030 -0.7701 0.5162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279287226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:16 Heat of formation + Delta-G solvation = -16.716763 kcal Electronic energy + Delta-G solvation = -27725.729781 eV Core-core repulsion = 23994.481984 eV Total energy + Delta-G solvation = -3731.247797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24203 -39.17316 -37.96730 -36.61235 -33.88163 -33.71174 -31.90968 -30.94038 -29.74857 -28.88778 -27.50179 -27.21438 -26.11428 -24.07681 -22.22113 -21.36914 -21.12810 -20.34353 -19.35472 -17.77958 -17.10575 -16.30404 -15.69125 -15.62473 -15.56054 -15.27184 -15.02687 -14.57512 -14.17088 -13.75058 -13.63883 -13.41779 -13.10087 -13.00612 -12.68425 -12.33931 -12.28374 -12.14570 -12.12855 -11.85610 -11.77499 -11.40173 -11.16756 -11.02242 -10.94857 -10.78426 -10.58741 -10.47236 -10.10065 -9.80316 -9.58751 -9.39971 -8.80221 -8.36054 -7.81549 -7.74490 -7.48325 -7.29575 -6.23516 -4.39491 1.74774 1.91745 2.46889 2.53928 3.15729 3.26786 3.27686 3.36946 3.84616 4.12579 4.22322 4.45411 4.93977 5.02695 5.04892 5.16152 5.20130 5.27364 5.44026 5.55729 5.72904 5.80388 5.82392 5.91249 5.98251 6.00775 6.03820 6.17513 6.26354 6.39266 6.56297 6.59871 6.65586 6.71025 6.78523 6.84510 6.91920 7.05365 7.05933 7.14566 7.47737 7.52853 7.57234 7.61922 7.69535 7.76341 8.07329 8.18673 8.38900 8.66807 9.28099 9.41487 10.77870 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.004358 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.299379 B = 6423.276644 C = 7863.919037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.318 6.318 3 C 0.141 3.859 4 C -0.245 4.245 5 C -0.068 4.068 6 C -0.175 4.175 7 C 0.219 3.781 8 N -0.667 5.667 9 C 0.551 3.449 10 O -0.517 6.517 11 C 0.058 3.942 12 H 0.063 0.937 13 C -0.547 4.547 14 H 0.071 0.929 15 C 0.076 3.924 16 N -0.840 5.840 17 Si 0.886 3.114 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.283 1.283 21 C -0.017 4.017 22 C -0.101 4.101 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.069 4.069 27 C -0.167 4.167 28 C -0.101 4.101 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.155 0.845 35 H 0.410 0.590 36 H 0.267 0.733 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.727 -2.523 -6.579 9.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.096 3.904 4 C -0.265 4.265 5 C -0.087 4.087 6 C -0.196 4.196 7 C 0.120 3.880 8 N -0.308 5.308 9 C 0.342 3.658 10 O -0.392 6.392 11 C 0.036 3.964 12 H 0.081 0.919 13 C -0.585 4.585 14 H 0.089 0.911 15 C -0.133 4.133 16 N -0.472 5.472 17 Si 0.713 3.287 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.209 1.209 21 C -0.018 4.018 22 C -0.119 4.119 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.164 4.164 26 C -0.087 4.087 27 C -0.171 4.171 28 C -0.158 4.158 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.172 0.828 35 H 0.246 0.754 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.089 -1.958 -6.052 9.524 hybrid contribution 0.133 -0.906 0.989 1.348 sum -6.957 -2.864 -5.063 9.068 Atomic orbital electron populations 1.22957 0.79135 1.03208 1.01156 1.86014 1.20673 1.27319 1.89106 1.18390 0.91096 0.83781 0.97174 1.20962 0.99140 0.92460 1.13937 1.20750 0.94340 0.96453 0.97165 1.21590 0.93233 0.99510 1.05266 1.17529 0.84160 0.92280 0.94034 1.43741 1.03190 1.19444 1.64452 1.21387 0.91372 0.79681 0.73333 1.90460 1.66609 1.39967 1.42174 1.17894 0.88176 0.93131 0.97173 0.91941 1.20756 1.28824 1.14859 0.94015 0.91130 1.25071 0.94585 0.95564 0.98083 1.70026 1.28101 1.36246 1.12841 0.86612 0.79953 0.81525 0.80650 1.19314 1.20607 1.20850 1.19769 0.93503 0.93723 0.94777 1.20981 0.98266 0.92273 1.00385 1.20835 0.98220 0.97105 0.99876 1.20799 0.97886 0.97410 1.00053 1.21005 1.00650 0.93412 1.01379 1.21167 0.96505 0.96514 0.94500 1.18752 0.90861 0.94718 1.12791 1.20475 0.99305 0.94406 1.01603 0.92965 0.88793 0.92941 0.86398 0.86297 0.82814 0.75434 0.92276 0.87387 0.87972 0.88104 0.87940 0.85377 0.92014 0.91335 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.63 9.54 -19.42 -0.19 -4.81 16 3 C 0.14 2.33 6.66 -39.24 -0.26 2.06 16 4 C -0.25 -3.76 9.04 -39.39 -0.36 -4.12 16 5 C -0.07 -1.12 10.03 -39.63 -0.40 -1.52 16 6 C -0.18 -3.40 8.77 -39.37 -0.35 -3.74 16 7 C 0.22 4.28 6.46 -83.71 -0.54 3.74 16 8 N -0.67 -13.41 4.97 -9.88 -0.05 -13.46 16 9 C 0.55 12.54 5.24 -10.99 -0.06 12.48 16 10 O -0.52 -12.95 10.82 5.56 0.06 -12.89 16 11 C 0.06 1.29 2.79 -94.07 -0.26 1.03 16 12 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.55 -12.81 7.09 -34.44 -0.24 -13.05 16 14 H 0.07 1.60 7.82 -52.49 -0.41 1.19 16 15 C 0.08 1.86 3.87 -17.81 -0.07 1.79 16 16 N -0.84 -22.47 11.03 55.43 0.61 -21.86 16 17 Si 0.89 19.46 29.54 -169.99 -5.02 14.43 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C -0.02 -0.38 4.56 -104.62 -0.48 -0.86 16 22 C -0.10 -2.19 8.21 -39.59 -0.32 -2.51 16 23 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 24 C -0.14 -2.75 10.05 -39.58 -0.40 -3.15 16 25 C -0.15 -2.97 10.05 -39.58 -0.40 -3.37 16 26 C -0.07 -1.56 8.32 -39.58 -0.33 -1.89 16 27 C -0.17 -2.98 5.91 -104.29 -0.62 -3.60 16 28 C -0.10 -1.58 9.23 36.01 0.33 -1.25 16 29 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 32 H 0.12 1.46 6.29 -52.49 -0.33 1.13 16 33 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.15 3.23 5.49 -52.48 -0.29 2.94 16 35 H 0.41 7.45 7.06 -40.82 -0.29 7.16 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.11 2.29 6.97 -52.49 -0.37 1.92 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.13 2.97 6.01 -52.49 -0.32 2.66 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.12 6.91 -51.93 -0.36 0.77 16 44 H 0.07 1.01 7.53 -51.93 -0.39 0.62 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -29.19 357.71 -8.98 -38.17 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -5.64 Total: 14.87 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -4.15 Total: -19.85 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.56 Total: -35.32 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.13 Total: -17.70 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.19 -8.98 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279287226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.456 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds