Wall clock time and date at job start Tue Mar 31 2020 13:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35898 * 116.99778 * 2 1 4 4 C 1.38812 * 120.01952 * 359.97438 * 3 2 1 5 5 C 1.38176 * 120.08244 * 179.74531 * 4 3 2 6 6 C 1.38166 * 120.12265 * 359.95751 * 5 4 3 7 7 C 1.38884 * 120.04156 * 359.97438 * 6 5 4 8 8 N 1.39931 * 120.04269 * 180.02562 * 7 6 5 9 9 C 1.34774 * 119.99526 * 21.20654 * 8 7 6 10 10 O 1.21282 * 120.00469 * 4.69003 * 9 8 7 11 11 C 1.50701 * 119.99649 * 184.68982 * 9 8 7 12 12 H 1.08993 * 109.47390 * 60.00151 * 11 9 8 13 13 C 1.50703 * 109.47213 * 299.99942 * 11 9 8 14 14 H 1.07998 * 119.99988 * 123.08962 * 13 11 9 15 15 C 1.37880 * 120.00006 * 303.09272 * 13 11 9 16 16 N 1.31523 * 119.99845 * 4.67693 * 15 13 11 17 17 Si 1.86794 * 120.00093 * 184.67273 * 15 13 11 18 18 H 1.48505 * 109.47045 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47123 * 120.00056 * 17 15 13 20 20 H 1.48502 * 109.47314 * 239.99831 * 17 15 13 21 21 C 1.50707 * 109.46968 * 180.02562 * 11 9 8 22 22 C 1.38228 * 119.99664 * 313.26573 * 21 11 9 23 23 C 1.38238 * 119.99719 * 179.79131 * 22 21 11 24 24 C 1.38238 * 120.00087 * 0.43773 * 23 22 21 25 25 C 1.38239 * 119.99618 * 359.81494 * 24 23 22 26 26 C 1.38231 * 120.00198 * 359.97438 * 25 24 23 27 27 C 1.38580 * 120.01778 * 179.72203 * 3 2 1 28 28 C 1.50700 * 120.06373 * 0.25421 * 27 3 2 29 29 H 1.08998 * 109.46951 * 60.00179 * 1 2 3 30 30 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47304 * 300.00173 * 1 2 3 32 32 H 1.08001 * 119.95784 * 359.72316 * 4 3 2 33 33 H 1.07991 * 119.93366 * 179.97438 * 5 4 3 34 34 H 1.08003 * 119.97388 * 180.02562 * 6 5 4 35 35 H 0.96998 * 119.99674 * 201.20826 * 8 7 6 36 36 H 0.96994 * 119.99666 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.00502 * 0.02562 * 22 21 11 38 38 H 1.07995 * 120.00093 * 180.27714 * 23 22 21 39 39 H 1.07994 * 120.00293 * 179.83106 * 24 23 22 40 40 H 1.07996 * 119.99920 * 179.97438 * 25 24 23 41 41 H 1.07995 * 120.00089 * 179.97438 * 26 25 24 42 42 H 1.08998 * 109.47105 * 89.99794 * 28 27 3 43 43 H 1.08994 * 109.46871 * 209.99963 * 28 27 3 44 44 H 1.08993 * 109.46731 * 330.00017 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9162 3.6072 0.0048 6 6 3.2957 3.6840 0.0115 7 6 4.0568 2.5222 0.0135 8 7 5.4539 2.6000 0.0209 9 6 6.0640 3.7233 0.4482 10 8 5.4065 4.6340 0.9057 11 6 7.5631 3.8476 0.3575 12 1 7.8726 3.7597 -0.6839 13 6 8.2079 2.7524 1.1674 14 1 8.9010 2.0701 0.6978 15 6 7.9130 2.6215 2.5079 16 7 7.0010 3.3924 3.0589 17 14 8.8087 1.3490 3.5413 18 1 9.7790 0.6143 2.6904 19 1 9.5329 2.0287 4.6452 20 1 7.8257 0.3920 4.1098 21 6 7.9895 5.1885 0.8973 22 6 7.3246 6.3348 0.5044 23 6 7.7129 7.5643 1.0029 24 6 8.7720 7.6483 1.8874 25 6 9.4403 6.5024 2.2762 26 6 9.0492 5.2725 1.7811 27 6 3.4299 1.2839 0.0058 28 6 4.2525 0.0212 0.0064 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2118 2.3183 -0.0055 33 1 1.3260 4.5115 0.0039 34 1 3.7824 4.6481 0.0161 35 1 5.9832 1.8455 -0.2815 36 1 6.7938 3.3005 4.0020 37 1 6.4992 6.2696 -0.1891 38 1 7.1906 8.4595 0.6994 39 1 9.0772 8.6091 2.2747 40 1 10.2680 6.5680 2.9668 41 1 9.5715 4.3773 2.0846 42 1 4.4550 -0.2809 -1.0211 43 1 5.1943 0.2015 0.5244 44 1 3.7030 -0.7701 0.5162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279287226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:16 Heat of formation + Delta-G solvation = -31.557073 kcal Electronic energy + Delta-G solvation = -27726.373305 eV Core-core repulsion = 23994.481984 eV Total energy + Delta-G solvation = -3731.891321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65627 -40.62687 -39.46057 -38.02002 -35.59201 -35.28990 -33.24888 -32.70599 -31.37222 -30.29621 -28.86020 -28.42834 -27.39540 -25.86491 -23.66038 -22.97395 -22.51664 -21.82850 -20.97966 -19.08842 -18.81556 -17.82914 -17.19948 -16.90655 -16.80461 -16.70288 -16.64637 -16.09337 -15.75550 -15.34716 -15.18263 -14.82911 -14.37858 -14.34636 -14.20285 -14.01950 -13.90008 -13.73659 -13.42700 -13.07533 -12.96770 -12.89728 -12.77771 -12.53354 -12.52117 -12.24844 -12.06761 -11.77672 -11.74513 -11.46951 -11.19120 -11.01141 -10.68078 -10.09386 -9.39542 -9.13518 -9.09248 -8.74401 -8.12832 -6.31126 0.39819 0.56664 0.85629 0.90935 1.38648 1.45383 1.53099 2.13024 2.28006 2.42699 2.73610 2.98366 3.16822 3.32358 3.89699 4.05663 4.21259 4.26355 4.34037 4.36681 4.44590 4.44965 4.50178 4.56432 4.65916 4.67915 4.77339 4.78151 4.81611 4.86201 4.96720 5.03300 5.12940 5.29988 5.37208 5.42944 5.49104 5.51443 5.55578 5.66134 5.70278 5.88139 5.90920 5.95174 6.14116 6.39025 6.50861 6.52372 6.69818 6.91285 7.38526 7.72666 8.87110 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.004358 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.299379 B = 6423.276644 C = 7863.919037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.140 3.860 4 C -0.235 4.235 5 C -0.068 4.068 6 C -0.201 4.201 7 C 0.191 3.809 8 N -0.663 5.663 9 C 0.550 3.450 10 O -0.547 6.547 11 C 0.048 3.952 12 H 0.075 0.925 13 C -0.537 4.537 14 H 0.076 0.924 15 C 0.043 3.957 16 N -0.873 5.873 17 Si 0.937 3.063 18 H -0.255 1.255 19 H -0.286 1.286 20 H -0.291 1.291 21 C -0.037 4.037 22 C -0.117 4.117 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.092 4.092 27 C -0.181 4.181 28 C -0.095 4.095 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.059 0.941 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.415 0.585 36 H 0.256 0.744 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 -2.896 -6.844 10.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.094 3.906 4 C -0.254 4.254 5 C -0.086 4.086 6 C -0.222 4.222 7 C 0.093 3.907 8 N -0.305 5.305 9 C 0.342 3.658 10 O -0.424 6.424 11 C 0.027 3.973 12 H 0.093 0.907 13 C -0.575 4.575 14 H 0.094 0.906 15 C -0.162 4.162 16 N -0.507 5.507 17 Si 0.763 3.237 18 H -0.179 1.179 19 H -0.212 1.212 20 H -0.218 1.218 21 C -0.038 4.038 22 C -0.135 4.135 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.169 4.169 26 C -0.110 4.110 27 C -0.185 4.185 28 C -0.152 4.152 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.252 0.748 36 H 0.066 0.934 37 H 0.120 0.880 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.174 -2.371 -6.350 10.619 hybrid contribution 0.343 -0.818 1.000 1.337 sum -7.831 -3.189 -5.350 10.005 Atomic orbital electron populations 1.23339 0.76531 1.05468 1.02206 1.86010 1.23304 1.26215 1.88653 1.18521 0.90871 0.85025 0.96220 1.21330 1.00898 0.91410 1.11779 1.21033 0.93270 0.98218 0.96110 1.21527 0.94761 0.98537 1.07337 1.17726 0.83721 0.93291 0.95922 1.43550 1.03888 1.18841 1.64191 1.21343 0.91364 0.80002 0.73102 1.90438 1.67142 1.41114 1.43679 1.18018 0.88280 0.93227 0.97782 0.90729 1.20962 1.27970 1.14580 0.93988 0.90562 1.25565 0.94915 0.96731 0.98996 1.70192 1.30087 1.38285 1.12174 0.85813 0.78953 0.79585 0.79329 1.17871 1.21179 1.21784 1.19868 0.94176 0.94115 0.95632 1.21057 0.98389 0.93034 1.01052 1.21207 0.98359 0.97309 0.99361 1.21199 0.96946 0.98612 0.99076 1.21321 1.01292 0.92977 1.01311 1.21166 0.97078 0.97147 0.95570 1.18993 0.92108 0.94617 1.12745 1.20454 0.98348 0.93715 1.02706 0.91458 0.86157 0.92196 0.82831 0.83775 0.85236 0.74809 0.93442 0.87975 0.85166 0.84412 0.85564 0.86834 0.90070 0.92737 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -8.74 9.54 -92.40 -0.88 -9.62 16 3 C 0.14 4.38 6.66 22.49 0.15 4.53 16 4 C -0.23 -6.65 9.04 22.39 0.20 -6.45 16 5 C -0.07 -2.16 10.03 22.24 0.22 -1.94 16 6 C -0.20 -8.00 8.77 22.41 0.20 -7.81 16 7 C 0.19 7.67 6.46 38.14 0.25 7.92 16 8 N -0.66 -27.71 4.97 -303.55 -1.51 -29.22 16 9 C 0.55 26.11 5.24 87.66 0.46 26.57 16 10 O -0.55 -28.70 10.82 -3.04 -0.03 -28.73 16 11 C 0.05 2.23 2.79 -13.03 -0.04 2.20 16 12 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 13 C -0.54 -25.63 7.09 25.60 0.18 -25.45 16 14 H 0.08 3.47 7.82 -2.91 -0.02 3.45 16 15 C 0.04 2.14 3.87 84.65 0.33 2.47 16 16 N -0.87 -48.19 11.03 21.45 0.24 -47.95 16 17 Si 0.94 40.50 29.54 68.60 2.03 42.52 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 19 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 C -0.04 -1.74 4.56 -19.87 -0.09 -1.83 16 22 C -0.12 -5.18 8.21 22.27 0.18 -4.99 16 23 C -0.14 -5.56 10.05 22.27 0.22 -5.34 16 24 C -0.14 -5.11 10.05 22.27 0.22 -4.88 16 25 C -0.15 -5.99 10.05 22.27 0.22 -5.76 16 26 C -0.09 -4.19 8.32 22.27 0.19 -4.00 16 27 C -0.18 -6.41 5.91 -19.65 -0.12 -6.52 16 28 C -0.10 -2.95 9.23 71.24 0.66 -2.29 16 29 H 0.07 0.92 7.65 -2.39 -0.02 0.90 16 30 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 32 H 0.15 3.19 6.29 -2.91 -0.02 3.17 16 33 H 0.14 3.75 8.06 -2.92 -0.02 3.72 16 34 H 0.13 5.78 5.49 -2.91 -0.02 5.76 16 35 H 0.41 15.67 7.06 -92.71 -0.65 15.01 16 36 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.10 4.52 6.97 -2.91 -0.02 4.50 16 38 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 40 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 41 H 0.11 5.40 6.01 -2.91 -0.02 5.39 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 1.81 6.91 -2.39 -0.02 1.79 16 44 H 0.07 2.12 7.53 -2.39 -0.02 2.10 16 Total: -1.00 -64.59 357.71 4.77 -59.82 By element: Atomic # 1 Polarization: 44.96 SS G_CDS: 0.38 Total: 45.34 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 4.55 Total: -32.16 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -1.27 Total: -77.17 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.91 Total: -38.35 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -64.59 4.77 -59.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279287226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.266 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds