Wall clock time and date at job start Tue Mar 31 2020 13:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38254 * 120.00264 * 2 1 4 4 C 1.38212 * 120.00017 * 180.21218 * 3 2 1 5 5 C 1.38251 * 120.00130 * 359.85303 * 4 3 2 6 6 C 1.50704 * 120.00144 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46966 * 239.97939 * 6 5 4 8 8 C 1.53002 * 109.46960 * 359.97026 * 6 5 4 9 9 C 1.52994 * 109.47327 * 119.97559 * 6 5 4 10 10 C 1.38209 * 119.99920 * 359.95562 * 5 4 3 11 11 C 1.38216 * 120.00031 * 179.80952 * 2 1 3 12 12 S 1.76200 * 119.99865 * 359.97438 * 11 2 1 13 13 O 1.42106 * 106.40390 * 310.76176 * 12 11 2 14 14 O 1.42103 * 106.40102 * 177.84535 * 12 11 2 15 15 N 1.65601 * 107.21861 * 64.30317 * 12 11 2 16 16 C 1.46493 * 119.99810 * 63.53533 * 15 12 11 17 17 C 1.53002 * 109.47324 * 163.33500 * 16 15 12 18 18 C 1.50695 * 109.47404 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00165 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99586 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00211 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47100 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47282 * 120.00284 * 22 20 18 25 25 H 1.48501 * 109.46770 * 240.00083 * 22 20 18 26 26 H 1.09000 * 109.46822 * 264.76132 * 1 2 3 27 27 H 1.08997 * 109.46991 * 24.75416 * 1 2 3 28 28 H 1.08992 * 109.47236 * 144.76137 * 1 2 3 29 29 H 1.08000 * 119.99854 * 0.04034 * 3 2 1 30 30 H 1.08002 * 119.99563 * 179.83187 * 4 3 2 31 31 H 1.08997 * 109.47378 * 59.99068 * 7 6 5 32 32 H 1.08997 * 109.47398 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.46726 * 299.99369 * 7 6 5 34 34 H 1.09003 * 109.46486 * 60.00535 * 8 6 5 35 35 H 1.09002 * 109.47054 * 180.02562 * 8 6 5 36 36 H 1.08995 * 109.47574 * 300.00768 * 8 6 5 37 37 H 1.09006 * 109.47422 * 59.99983 * 9 6 5 38 38 H 1.09002 * 109.47211 * 180.02562 * 9 6 5 39 39 H 1.08995 * 109.47468 * 299.99900 * 9 6 5 40 40 H 1.08007 * 120.00030 * 180.02562 * 10 5 4 41 41 H 0.96995 * 119.99965 * 243.25675 * 15 12 11 42 42 H 1.08997 * 109.47304 * 283.33682 * 16 15 12 43 43 H 1.09000 * 109.47475 * 43.33542 * 16 15 12 44 44 H 1.08997 * 109.47078 * 300.00320 * 17 16 15 45 45 H 1.09000 * 109.46810 * 59.99635 * 17 16 15 46 46 H 0.96997 * 119.99403 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0044 5 6 4.2717 -0.0001 -0.0058 6 6 5.7787 -0.0001 -0.0112 7 6 6.2841 -0.7231 -1.2614 8 6 6.2887 1.4424 -0.0151 9 6 6.2932 -0.7197 1.2371 10 6 3.5806 -1.1970 -0.0018 11 6 2.1981 -1.1970 0.0040 12 16 1.3170 -2.7229 0.0097 13 8 0.3460 -2.6217 1.0423 14 8 2.2961 -3.7517 -0.0382 15 7 0.4774 -2.8095 -1.4150 16 6 1.1993 -2.8579 -2.6888 17 6 0.2566 -3.3449 -3.7911 18 6 0.9990 -3.3941 -5.1016 19 1 2.0393 -3.1071 -5.1440 20 6 0.3502 -3.8055 -6.2465 21 7 -0.9168 -4.1545 -6.1950 22 14 1.2706 -3.8671 -7.8708 23 1 2.6735 -3.4271 -7.6618 24 1 1.2598 -5.2569 -8.3935 25 1 0.6100 -2.9655 -8.8485 26 1 -0.3633 -0.0938 1.0234 27 1 -0.3633 0.9332 -0.4303 28 1 -0.3633 -0.8393 -0.5929 29 1 1.6583 2.1326 0.0007 30 1 4.1204 2.1326 -0.0072 31 1 5.9175 -0.2105 -2.1507 32 1 7.3741 -0.7235 -1.2652 33 1 5.9208 -1.7508 -1.2586 34 1 5.9286 1.9574 0.8755 35 1 7.3787 1.4423 -0.0195 36 1 5.9221 1.9550 -0.9044 37 1 5.9298 -1.7474 1.2399 38 1 7.3832 -0.7193 1.2334 39 1 5.9331 -0.2047 2.1277 40 1 4.1206 -2.1324 -0.0024 41 1 -0.4922 -2.8323 -1.4059 42 1 1.5648 -1.8616 -2.9373 43 1 2.0425 -3.5432 -2.6029 44 1 -0.1089 -4.3413 -3.5426 45 1 -0.5866 -2.6596 -3.8771 46 1 -1.3731 -4.4443 -7.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323730908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:21 Heat of formation + Delta-G solvation = -77.068539 kcal Electronic energy + Delta-G solvation = -26248.822276 eV Core-core repulsion = 22650.401381 eV Total energy + Delta-G solvation = -3598.420895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14044 -37.18565 -36.75021 -35.60190 -35.42972 -32.78665 -32.00402 -31.50307 -29.14348 -27.67609 -27.41161 -26.84664 -24.49355 -23.04259 -22.24422 -21.17080 -20.04299 -18.87504 -17.32588 -16.94540 -16.36014 -16.10719 -15.97057 -15.13214 -14.74592 -14.57424 -14.51824 -14.16083 -13.97900 -13.87430 -13.76257 -13.59738 -12.70023 -12.62508 -12.54953 -12.46166 -12.11214 -11.97951 -11.93181 -11.86860 -11.85306 -11.75832 -11.68200 -11.28853 -11.21250 -11.13267 -11.12116 -10.77277 -10.64172 -10.57392 -10.34143 -9.60075 -9.39513 -9.25504 -8.91201 -8.66459 -8.41808 -6.08884 -4.11974 0.60771 0.86688 1.21262 3.20303 3.27506 3.35389 3.39146 3.48347 3.97272 4.29080 4.40566 4.46922 4.68868 4.71348 4.76826 4.83538 4.94187 5.06703 5.23415 5.28193 5.34987 5.43220 5.44766 5.54183 5.56656 5.59393 5.66166 5.70430 5.71475 5.78209 5.82644 5.85345 6.01961 6.05886 6.11461 6.13616 6.20240 6.26497 6.38730 6.48172 6.71892 6.78703 7.39042 7.55604 7.64961 7.90024 8.27856 8.94037 9.52672 11.02622 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011389 B = 0.003964 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.924550 B = 7062.751227 C = 8256.953352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.018 3.982 3 C -0.142 4.142 4 C -0.066 4.066 5 C -0.100 4.100 6 C -0.029 4.029 7 C -0.144 4.144 8 C -0.144 4.144 9 C -0.143 4.143 10 C -0.013 4.013 11 C -0.670 4.670 12 S 2.692 3.308 13 O -0.969 6.969 14 O -0.963 6.963 15 N -1.111 6.111 16 C 0.120 3.880 17 C 0.018 3.982 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.141 0.859 41 H 0.416 0.584 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.256 12.322 14.325 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 C -0.161 4.161 4 C -0.084 4.084 5 C -0.101 4.101 6 C -0.029 4.029 7 C -0.201 4.201 8 C -0.201 4.201 9 C -0.200 4.200 10 C -0.032 4.032 11 C -0.756 4.756 12 S 2.782 3.218 13 O -0.959 6.959 14 O -0.953 6.953 15 N -0.874 5.874 16 C -0.005 4.005 17 C -0.021 4.021 18 C -0.562 4.562 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.723 3.277 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.159 0.841 41 H 0.252 0.748 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.340 11.649 14.873 21.537 hybrid contribution 0.209 0.698 -1.330 1.517 sum 10.548 12.347 13.543 21.145 Atomic orbital electron populations 1.21285 0.90367 1.04373 1.04345 1.19526 0.95816 0.91874 0.91064 1.21132 0.94302 0.97585 1.03042 1.21415 0.94113 0.98026 0.94799 1.19884 0.95168 0.93054 1.01988 1.19503 0.90222 0.96538 0.96597 1.21953 1.00901 1.00802 0.96478 1.21972 1.01143 0.95122 1.01883 1.21939 1.00943 1.00623 0.96469 1.20779 0.91741 0.99003 0.91668 1.30855 1.06120 1.20051 1.18604 1.01864 0.73468 0.73783 0.72730 1.93570 1.60041 1.87304 1.54964 1.93554 1.61850 1.53460 1.86440 1.55520 1.18683 1.90849 1.22301 1.21638 0.96328 1.00303 0.82197 1.19290 0.94386 0.97200 0.91215 1.21118 0.97386 1.45059 0.92597 0.92250 1.24995 0.94895 0.95130 0.99237 1.69969 1.09666 1.44724 1.28776 0.86490 0.80000 0.77733 0.83515 1.19638 1.20909 1.20996 0.88738 0.90089 0.90645 0.85293 0.85088 0.92155 0.92152 0.91873 0.92357 0.92163 0.92169 0.92039 0.92103 0.92503 0.84124 0.74849 0.92977 0.91377 0.95543 0.95778 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.62 36.00 0.31 -1.44 16 2 C 0.02 0.24 5.87 -104.62 -0.61 -0.37 16 3 C -0.14 -1.61 9.68 -39.58 -0.38 -1.99 16 4 C -0.07 -0.70 8.98 -39.59 -0.36 -1.06 16 5 C -0.10 -1.17 4.76 -104.63 -0.50 -1.67 16 6 C -0.03 -0.27 0.85 -155.66 -0.13 -0.40 16 7 C -0.14 -1.41 8.29 37.16 0.31 -1.11 16 8 C -0.14 -1.09 7.13 37.16 0.27 -0.83 16 9 C -0.14 -1.26 8.29 37.15 0.31 -0.95 16 10 C -0.01 -0.18 8.22 -39.59 -0.33 -0.50 16 11 C -0.67 -9.87 5.85 -39.58 -0.23 -10.10 16 12 S 2.69 44.31 4.94 -107.50 -0.53 43.78 16 13 O -0.97 -16.90 16.54 -57.17 -0.95 -17.85 16 14 O -0.96 -18.27 16.47 -57.17 -0.94 -19.22 16 15 N -1.11 -18.68 4.74 -10.62 -0.05 -18.73 16 16 C 0.12 2.37 6.16 -4.04 -0.02 2.35 16 17 C 0.02 0.44 5.12 -27.88 -0.14 0.29 16 18 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 27 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 28 H 0.07 0.94 5.43 -51.93 -0.28 0.66 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.06 5.90 -52.49 -0.31 0.75 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 34 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 37 H 0.06 0.58 7.39 -51.93 -0.38 0.19 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.14 1.90 6.38 -52.48 -0.33 1.57 16 41 H 0.42 6.36 8.31 -34.47 -0.29 6.08 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -32.56 378.11 -10.33 -42.89 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.34 Total: 3.30 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: -1.93 Total: -30.71 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.69 Total: -43.95 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -1.89 Total: -37.06 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 44.31 SS G_CDS: -0.53 Total: 43.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.56 -10.33 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323730908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.179 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds