Wall clock time and date at job start Tue Mar 31 2020 13:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38254 * 120.00264 * 2 1 4 4 C 1.38212 * 120.00017 * 180.21218 * 3 2 1 5 5 C 1.38251 * 120.00130 * 359.85303 * 4 3 2 6 6 C 1.50704 * 120.00144 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46966 * 239.97939 * 6 5 4 8 8 C 1.53002 * 109.46960 * 359.97026 * 6 5 4 9 9 C 1.52994 * 109.47327 * 119.97559 * 6 5 4 10 10 C 1.38209 * 119.99920 * 359.95562 * 5 4 3 11 11 C 1.38216 * 120.00031 * 179.80952 * 2 1 3 12 12 S 1.76200 * 119.99865 * 359.97438 * 11 2 1 13 13 O 1.42106 * 106.40390 * 310.76176 * 12 11 2 14 14 O 1.42103 * 106.40102 * 177.84535 * 12 11 2 15 15 N 1.65601 * 107.21861 * 64.30317 * 12 11 2 16 16 C 1.46493 * 119.99810 * 63.53533 * 15 12 11 17 17 C 1.53002 * 109.47324 * 163.33500 * 16 15 12 18 18 C 1.50695 * 109.47404 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00165 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99586 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00211 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47100 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47282 * 120.00284 * 22 20 18 25 25 H 1.48501 * 109.46770 * 240.00083 * 22 20 18 26 26 H 1.09000 * 109.46822 * 264.76132 * 1 2 3 27 27 H 1.08997 * 109.46991 * 24.75416 * 1 2 3 28 28 H 1.08992 * 109.47236 * 144.76137 * 1 2 3 29 29 H 1.08000 * 119.99854 * 0.04034 * 3 2 1 30 30 H 1.08002 * 119.99563 * 179.83187 * 4 3 2 31 31 H 1.08997 * 109.47378 * 59.99068 * 7 6 5 32 32 H 1.08997 * 109.47398 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.46726 * 299.99369 * 7 6 5 34 34 H 1.09003 * 109.46486 * 60.00535 * 8 6 5 35 35 H 1.09002 * 109.47054 * 180.02562 * 8 6 5 36 36 H 1.08995 * 109.47574 * 300.00768 * 8 6 5 37 37 H 1.09006 * 109.47422 * 59.99983 * 9 6 5 38 38 H 1.09002 * 109.47211 * 180.02562 * 9 6 5 39 39 H 1.08995 * 109.47468 * 299.99900 * 9 6 5 40 40 H 1.08007 * 120.00030 * 180.02562 * 10 5 4 41 41 H 0.96995 * 119.99965 * 243.25675 * 15 12 11 42 42 H 1.08997 * 109.47304 * 283.33682 * 16 15 12 43 43 H 1.09000 * 109.47475 * 43.33542 * 16 15 12 44 44 H 1.08997 * 109.47078 * 300.00320 * 17 16 15 45 45 H 1.09000 * 109.46810 * 59.99635 * 17 16 15 46 46 H 0.96997 * 119.99403 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0044 5 6 4.2717 -0.0001 -0.0058 6 6 5.7787 -0.0001 -0.0112 7 6 6.2841 -0.7231 -1.2614 8 6 6.2887 1.4424 -0.0151 9 6 6.2932 -0.7197 1.2371 10 6 3.5806 -1.1970 -0.0018 11 6 2.1981 -1.1970 0.0040 12 16 1.3170 -2.7229 0.0097 13 8 0.3460 -2.6217 1.0423 14 8 2.2961 -3.7517 -0.0382 15 7 0.4774 -2.8095 -1.4150 16 6 1.1993 -2.8579 -2.6888 17 6 0.2566 -3.3449 -3.7911 18 6 0.9990 -3.3941 -5.1016 19 1 2.0393 -3.1071 -5.1440 20 6 0.3502 -3.8055 -6.2465 21 7 -0.9168 -4.1545 -6.1950 22 14 1.2706 -3.8671 -7.8708 23 1 2.6735 -3.4271 -7.6618 24 1 1.2598 -5.2569 -8.3935 25 1 0.6100 -2.9655 -8.8485 26 1 -0.3633 -0.0938 1.0234 27 1 -0.3633 0.9332 -0.4303 28 1 -0.3633 -0.8393 -0.5929 29 1 1.6583 2.1326 0.0007 30 1 4.1204 2.1326 -0.0072 31 1 5.9175 -0.2105 -2.1507 32 1 7.3741 -0.7235 -1.2652 33 1 5.9208 -1.7508 -1.2586 34 1 5.9286 1.9574 0.8755 35 1 7.3787 1.4423 -0.0195 36 1 5.9221 1.9550 -0.9044 37 1 5.9298 -1.7474 1.2399 38 1 7.3832 -0.7193 1.2334 39 1 5.9331 -0.2047 2.1277 40 1 4.1206 -2.1324 -0.0024 41 1 -0.4922 -2.8323 -1.4059 42 1 1.5648 -1.8616 -2.9373 43 1 2.0425 -3.5432 -2.6029 44 1 -0.1089 -4.3413 -3.5426 45 1 -0.5866 -2.6596 -3.8771 46 1 -1.3731 -4.4443 -7.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323730908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:20 Heat of formation + Delta-G solvation = -97.048025 kcal Electronic energy + Delta-G solvation = -26249.688651 eV Core-core repulsion = 22650.401381 eV Total energy + Delta-G solvation = -3599.287270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02479 -38.47616 -37.69812 -37.05041 -37.01154 -34.76256 -32.92334 -32.44897 -31.01742 -28.32364 -28.13371 -27.75351 -26.43135 -24.00636 -23.16296 -22.98954 -21.05031 -20.12131 -18.79285 -18.20940 -17.97116 -17.40214 -16.97769 -16.49887 -16.27850 -15.65666 -15.64435 -15.46716 -15.23069 -14.80292 -14.67449 -14.53884 -14.41763 -13.55948 -13.47604 -13.43425 -13.34392 -13.27894 -13.26763 -13.09022 -13.00374 -12.92426 -12.79597 -12.62677 -12.55098 -12.43911 -12.37252 -12.06094 -11.84153 -11.57457 -11.51793 -11.39967 -11.29503 -10.62235 -10.35980 -10.32045 -9.59413 -8.20774 -6.31161 -0.66075 -0.18259 0.27621 1.42344 1.43645 1.56112 1.94547 2.41290 2.44139 2.71602 3.14372 3.31926 3.56812 3.71680 3.81564 3.97233 4.08870 4.09871 4.17241 4.32460 4.35812 4.50790 4.53132 4.63744 4.69243 4.75974 4.78822 4.80114 4.88784 4.89147 4.94034 4.97676 5.00561 5.03214 5.15450 5.17051 5.26610 5.30679 5.40644 5.41154 5.49422 5.56509 5.63014 5.80766 5.88705 6.00395 6.22411 6.84122 7.38038 8.91523 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011389 B = 0.003964 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.924550 B = 7062.751227 C = 8256.953352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.004 3.996 3 C -0.140 4.140 4 C -0.059 4.059 5 C -0.102 4.102 6 C -0.029 4.029 7 C -0.146 4.146 8 C -0.142 4.142 9 C -0.143 4.143 10 C -0.033 4.033 11 C -0.683 4.683 12 S 2.704 3.296 13 O -0.981 6.981 14 O -0.995 6.995 15 N -1.110 6.110 16 C 0.137 3.863 17 C 0.021 3.979 18 C -0.542 4.542 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.261 1.261 24 H -0.281 1.281 25 H -0.277 1.277 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.132 0.868 41 H 0.422 0.578 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.001 0.999 45 H 0.012 0.988 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.971 15.052 14.230 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.003 3.997 3 C -0.159 4.159 4 C -0.077 4.077 5 C -0.103 4.103 6 C -0.029 4.029 7 C -0.203 4.203 8 C -0.199 4.199 9 C -0.201 4.201 10 C -0.053 4.053 11 C -0.773 4.773 12 S 2.798 3.202 13 O -0.971 6.971 14 O -0.985 6.985 15 N -0.871 5.871 16 C 0.012 3.988 17 C -0.017 4.017 18 C -0.581 4.581 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.570 5.570 22 Si 0.788 3.212 23 H -0.185 1.185 24 H -0.207 1.207 25 H -0.203 1.203 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.081 0.919 29 H 0.179 0.821 30 H 0.182 0.818 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.150 0.850 41 H 0.258 0.742 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.019 0.981 45 H 0.030 0.970 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.032 14.342 14.789 23.857 hybrid contribution -0.305 -0.098 -1.232 1.273 sum 11.727 14.245 13.557 22.896 Atomic orbital electron populations 1.21381 0.89787 1.05271 1.04511 1.19796 0.96511 0.92080 0.91330 1.21543 0.94791 0.97981 1.01562 1.21853 0.94172 0.98854 0.92823 1.20199 0.96520 0.92634 1.00976 1.19578 0.88767 0.98123 0.96463 1.21972 1.01986 0.99793 0.96557 1.21968 1.01986 0.93383 1.02552 1.21952 1.01979 0.99756 0.96372 1.20866 0.91562 0.99862 0.92980 1.30414 1.06389 1.19079 1.21380 1.01199 0.72864 0.74105 0.72075 1.93544 1.60701 1.87806 1.55080 1.93507 1.62506 1.55804 1.86701 1.55351 1.19025 1.91302 1.21457 1.21251 0.95051 1.00583 0.81926 1.19155 0.94728 0.95607 0.92255 1.21563 0.97903 1.44799 0.93813 0.91653 1.25898 0.95711 0.94695 1.03084 1.70090 1.11277 1.45689 1.29909 0.85415 0.79109 0.77768 0.78865 1.18487 1.20665 1.20307 0.88545 0.87507 0.91877 0.82097 0.81821 0.92711 0.90462 0.93587 0.91315 0.90953 0.91772 0.93508 0.90475 0.92152 0.85040 0.74192 0.91600 0.91997 0.98105 0.97005 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.62 71.24 0.61 -2.83 16 2 C 0.00 0.11 5.87 -19.87 -0.12 -0.01 16 3 C -0.14 -2.74 9.68 22.27 0.22 -2.52 16 4 C -0.06 -1.08 8.98 22.27 0.20 -0.88 16 5 C -0.10 -2.22 4.76 -19.87 -0.09 -2.32 16 6 C -0.03 -0.50 0.85 -52.93 -0.05 -0.54 16 7 C -0.15 -2.69 8.29 71.98 0.60 -2.09 16 8 C -0.14 -1.65 7.13 71.98 0.51 -1.14 16 9 C -0.14 -2.32 8.29 71.98 0.60 -1.72 16 10 C -0.03 -0.92 8.22 22.27 0.18 -0.73 16 11 C -0.68 -20.04 5.85 22.27 0.13 -19.91 16 12 S 2.70 91.71 4.94 -56.49 -0.28 91.43 16 13 O -0.98 -35.00 16.54 -128.00 -2.12 -37.11 16 14 O -0.99 -39.43 16.47 -128.00 -2.11 -41.53 16 15 N -1.11 -38.46 4.74 -187.50 -0.89 -39.35 16 16 C 0.14 5.55 6.16 86.38 0.53 6.08 16 17 C 0.02 1.07 5.12 29.85 0.15 1.22 16 18 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 19 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 20 C 0.00 0.25 5.46 84.65 0.46 0.71 16 21 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 22 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H 0.10 2.11 8.03 -2.39 -0.02 2.09 16 27 H 0.11 1.79 8.05 -2.39 -0.02 1.77 16 28 H 0.06 1.56 5.43 -2.39 -0.01 1.55 16 29 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.16 1.88 5.90 -2.91 -0.02 1.86 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 0.98 7.39 -2.38 -0.02 0.97 16 34 H 0.07 0.67 7.51 -2.39 -0.02 0.65 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.71 7.51 -2.39 -0.02 0.69 16 37 H 0.05 0.88 7.39 -2.38 -0.02 0.86 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.13 3.75 6.38 -2.91 -0.02 3.73 16 41 H 0.42 13.44 8.31 -96.75 -0.80 12.64 16 42 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.06 2.56 7.75 -2.39 -0.02 2.55 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -70.49 378.11 1.26 -69.23 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.17 Total: 22.95 kcal Atomic # 6 Polarization: -60.31 SS G_CDS: 4.17 Total: -56.14 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -0.60 Total: -93.98 kcal Atomic # 8 Polarization: -74.42 SS G_CDS: -4.23 Total: -78.65 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 91.71 SS G_CDS: -0.28 Total: 91.43 kcal Total: -70.49 1.26 -69.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323730908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.818 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds