Wall clock time and date at job start Tue Mar 31 2020 14:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47299 * 2 1 4 4 C 1.38256 * 120.00158 * 265.02307 * 3 2 1 5 5 C 1.38220 * 120.00101 * 179.97438 * 4 3 2 6 6 C 1.38262 * 119.99805 * 0.02562 * 5 4 3 7 7 C 1.38210 * 119.99754 * 359.70911 * 6 5 4 8 8 C 1.38217 * 120.00135 * 84.99855 * 3 2 1 9 9 C 1.50706 * 119.99606 * 0.02562 * 8 3 2 10 10 C 1.50696 * 109.46783 * 85.00442 * 9 8 3 11 11 O 1.21293 * 120.00426 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99908 * 179.97438 * 10 9 8 13 13 C 1.39996 * 120.00315 * 185.20552 * 12 10 9 14 14 C 1.38914 * 120.00432 * 213.40281 * 13 12 10 15 15 C 1.38000 * 119.99696 * 179.76858 * 14 13 12 16 16 C 1.38912 * 120.00081 * 0.48400 * 15 14 13 17 17 O 1.35777 * 119.99798 * 179.74598 * 16 15 14 18 18 C 1.34809 * 117.00089 * 185.93441 * 17 16 15 19 19 H 1.08005 * 119.99874 * 5.40868 * 18 17 16 20 20 C 1.38630 * 120.00351 * 185.40738 * 18 17 16 21 21 N 1.31581 * 119.99819 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00543 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46957 * 89.99993 * 22 20 18 24 24 H 1.48497 * 109.47550 * 210.00198 * 22 20 18 25 25 H 1.48502 * 109.47153 * 330.00456 * 22 20 18 26 26 C 1.38906 * 120.00543 * 359.76976 * 16 15 14 27 27 C 1.38004 * 119.99807 * 359.97438 * 26 16 15 28 28 H 1.09005 * 109.46850 * 60.00217 * 1 2 3 29 29 H 1.08995 * 109.47117 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46880 * 300.00269 * 1 2 3 31 31 H 1.08999 * 109.47334 * 240.00354 * 2 1 3 32 32 H 1.08998 * 109.47227 * 119.99823 * 2 1 3 33 33 H 1.07992 * 119.99967 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.99887 * 180.02562 * 5 4 3 35 35 H 1.07993 * 119.99446 * 179.97438 * 6 5 4 36 36 H 1.08004 * 119.99484 * 180.29870 * 7 6 5 37 37 H 1.08998 * 109.47448 * 324.99763 * 9 8 3 38 38 H 1.08999 * 109.47004 * 205.00198 * 9 8 3 39 39 H 0.97003 * 119.99720 * 5.20876 * 12 10 9 40 40 H 1.07998 * 120.00278 * 359.97438 * 14 13 12 41 41 H 1.07999 * 119.99906 * 180.21122 * 15 14 13 42 42 H 0.96995 * 120.00084 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.00302 * 179.97438 * 26 16 15 44 44 H 1.07995 * 120.00157 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0379 -1.1928 5 6 2.8210 3.3413 -1.1928 6 6 2.9535 4.0276 0.0001 7 6 2.6200 3.4124 1.1919 8 6 2.1644 2.1072 1.1924 9 6 1.8064 1.4344 2.4926 10 6 2.9861 0.6379 2.9874 11 8 4.0160 0.6179 2.3470 12 7 2.8968 -0.0525 4.1415 13 6 4.0241 -0.7030 4.6571 14 6 3.8796 -1.8963 5.3535 15 6 4.9914 -2.5399 5.8576 16 6 6.2539 -1.9894 5.6774 17 8 7.3472 -2.6200 6.1779 18 6 8.5262 -1.9742 6.0766 19 1 8.5579 -0.9648 5.6935 20 6 9.6980 -2.6055 6.4642 21 7 9.6595 -3.8353 6.9304 22 14 11.3316 -1.7104 6.3245 23 1 11.6029 -0.9758 7.5863 24 1 12.4164 -2.6950 6.0819 25 1 11.2741 -0.7487 5.1945 26 6 6.3980 -0.7934 4.9857 27 6 5.2868 -0.1524 4.4769 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2576 1.5017 -2.1245 34 1 3.0771 3.8234 -2.1246 35 1 3.3135 5.0458 0.0000 36 1 2.7190 3.9503 2.1233 37 1 0.9582 0.7682 2.3356 38 1 1.5425 2.1904 3.2322 39 1 2.0513 -0.0986 4.6148 40 1 2.8976 -2.3220 5.4975 41 1 4.8794 -3.4694 6.3960 42 1 10.4794 -4.2772 7.2013 43 1 7.3795 -0.3652 4.8460 44 1 5.3987 0.7776 3.9395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324383144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:19 Heat of formation + Delta-G solvation = -19.288748 kcal Electronic energy + Delta-G solvation = -26157.988496 eV Core-core repulsion = 22426.629170 eV Total energy + Delta-G solvation = -3731.359326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51883 -39.42091 -38.48621 -36.47744 -34.47597 -33.92594 -32.72240 -32.14408 -30.20510 -29.70888 -28.66971 -27.04020 -25.23079 -24.03301 -22.72552 -22.15108 -21.48516 -20.63493 -19.90114 -18.12201 -17.57316 -16.80538 -16.62289 -16.30634 -16.13946 -15.21979 -14.84782 -14.49326 -14.24518 -14.07089 -13.92950 -13.68770 -13.56746 -13.52504 -13.25966 -13.10300 -12.85604 -12.59871 -12.30133 -12.17429 -11.94691 -11.70845 -11.56527 -11.50577 -11.42319 -10.98894 -10.96741 -10.84561 -10.76361 -10.42819 -9.78219 -9.58534 -9.26236 -8.89606 -8.69672 -8.67348 -8.20213 -6.91385 -6.43554 -4.01009 1.21757 1.30416 2.08546 2.21002 2.88554 3.15439 3.16274 3.21001 3.28537 3.74071 3.99054 4.43990 4.56512 4.58980 4.74102 4.79615 4.93180 4.98498 5.04873 5.12145 5.15733 5.19776 5.25796 5.33245 5.40357 5.48052 5.67588 5.70032 5.72752 5.74163 5.86338 5.96329 6.06186 6.15442 6.18691 6.33873 6.36403 6.39855 6.53495 6.73568 6.85386 6.90719 7.01255 7.11241 7.30136 7.44589 7.70348 7.79691 8.01556 8.40164 9.02364 9.71908 10.74486 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.002565 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.821545 B =10915.096272 C =11828.270264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.062 4.062 9 C -0.105 4.105 10 C 0.505 3.495 11 O -0.514 6.514 12 N -0.664 5.664 13 C 0.037 3.963 14 C -0.094 4.094 15 C -0.178 4.178 16 C 0.146 3.854 17 O -0.177 6.177 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.218 4.218 27 C -0.064 4.064 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.401 0.599 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.270 0.730 43 H 0.130 0.870 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.463 12.160 -11.336 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.062 4.062 9 C -0.145 4.145 10 C 0.291 3.709 11 O -0.388 6.388 12 N -0.309 5.309 13 C -0.055 4.055 14 C -0.114 4.114 15 C -0.198 4.198 16 C 0.092 3.908 17 O -0.080 6.080 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.238 4.238 27 C -0.084 4.084 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.235 0.765 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.080 0.920 43 H 0.148 0.852 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.520 11.778 -11.615 24.832 hybrid contribution 0.499 0.481 0.120 0.704 sum -18.021 12.260 -11.495 24.641 Atomic orbital electron populations 1.21771 0.94723 1.01817 1.02057 1.20580 0.95869 0.92901 1.03390 1.19666 0.98282 0.95661 0.92630 1.20975 1.00167 0.95182 0.97349 1.21102 0.99709 0.94832 0.98019 1.21056 1.00691 1.00003 0.92563 1.20970 0.98632 0.94463 0.98191 1.19085 1.00155 0.93960 0.93026 1.20739 0.97609 1.00049 0.96097 1.20515 0.89777 0.80161 0.80424 1.90762 1.31001 1.61563 1.55477 1.43271 1.12192 1.51855 1.23560 1.17234 0.86575 0.95493 1.06202 1.20341 0.97782 0.93185 1.00125 1.19989 0.89688 1.02328 1.07762 1.19410 0.88557 0.91363 0.91510 1.83986 1.13541 1.42624 1.67863 1.21322 0.81693 0.98603 1.44987 0.89091 1.25282 0.98889 0.95940 0.96404 1.70046 1.28824 1.11506 1.39435 0.85720 0.80055 0.78718 0.79023 1.19872 1.20248 1.19140 1.21091 0.99126 0.98393 1.05189 1.20702 0.90847 0.99086 0.97785 0.92511 0.92249 0.92561 0.90921 0.90874 0.86246 0.86276 0.86208 0.86230 0.87880 0.88049 0.76495 0.86752 0.86071 0.92034 0.85240 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.72 37.16 0.36 -0.72 16 2 C -0.09 -0.89 5.38 -27.88 -0.15 -1.04 16 3 C -0.06 -0.70 5.13 -104.62 -0.54 -1.24 16 4 C -0.12 -1.25 9.68 -39.58 -0.38 -1.63 16 5 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 6 C -0.13 -1.28 10.05 -39.58 -0.40 -1.67 16 7 C -0.10 -1.14 9.68 -39.59 -0.38 -1.52 16 8 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 9 C -0.11 -1.00 5.17 -29.03 -0.15 -1.15 16 10 C 0.50 7.00 6.76 -10.99 -0.07 6.93 16 11 O -0.51 -9.54 13.74 5.55 0.08 -9.46 16 12 N -0.66 -8.81 5.34 -9.82 -0.05 -8.86 16 13 C 0.04 0.66 6.28 -83.62 -0.52 0.13 16 14 C -0.09 -1.64 9.96 -39.42 -0.39 -2.03 16 15 C -0.18 -3.72 9.98 -39.42 -0.39 -4.11 16 16 C 0.15 3.57 6.65 -39.08 -0.26 3.31 16 17 O -0.18 -5.09 9.75 0.02 0.00 -5.09 16 18 C -0.39 -11.06 9.44 30.88 0.29 -10.77 16 19 H 0.09 2.41 5.29 -52.48 -0.28 2.13 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 22 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 C -0.22 -5.00 9.13 -39.42 -0.36 -5.36 16 27 C -0.06 -1.31 8.65 -39.41 -0.34 -1.65 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 6.80 -51.93 -0.35 0.02 16 31 H 0.07 0.69 8.05 -51.93 -0.42 0.28 16 32 H 0.07 0.83 6.42 -51.93 -0.33 0.49 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.10 0.76 5.62 -51.93 -0.29 0.47 16 38 H 0.10 0.72 8.05 -51.93 -0.42 0.31 16 39 H 0.40 3.68 8.82 -40.82 -0.36 3.32 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.13 3.01 5.71 -52.49 -0.30 2.71 16 44 H 0.12 2.41 6.43 -52.49 -0.34 2.07 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -34.39 369.08 -8.93 -43.32 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.61 Total: 7.70 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -4.65 Total: -24.28 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.71 Total: -33.62 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.08 Total: -14.55 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.39 -8.93 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324383144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.036 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds