Wall clock time and date at job start Tue Mar 31 2020 14:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47299 * 2 1 4 4 C 1.38256 * 120.00158 * 265.02307 * 3 2 1 5 5 C 1.38220 * 120.00101 * 179.97438 * 4 3 2 6 6 C 1.38262 * 119.99805 * 0.02562 * 5 4 3 7 7 C 1.38210 * 119.99754 * 359.70911 * 6 5 4 8 8 C 1.38217 * 120.00135 * 84.99855 * 3 2 1 9 9 C 1.50706 * 119.99606 * 0.02562 * 8 3 2 10 10 C 1.50696 * 109.46783 * 85.00442 * 9 8 3 11 11 O 1.21293 * 120.00426 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99908 * 179.97438 * 10 9 8 13 13 C 1.39996 * 120.00315 * 185.20552 * 12 10 9 14 14 C 1.38914 * 120.00432 * 213.40281 * 13 12 10 15 15 C 1.38000 * 119.99696 * 179.76858 * 14 13 12 16 16 C 1.38912 * 120.00081 * 0.48400 * 15 14 13 17 17 O 1.35777 * 119.99798 * 179.74598 * 16 15 14 18 18 C 1.34809 * 117.00089 * 185.93441 * 17 16 15 19 19 H 1.08005 * 119.99874 * 5.40868 * 18 17 16 20 20 C 1.38630 * 120.00351 * 185.40738 * 18 17 16 21 21 N 1.31581 * 119.99819 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00543 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46957 * 89.99993 * 22 20 18 24 24 H 1.48497 * 109.47550 * 210.00198 * 22 20 18 25 25 H 1.48502 * 109.47153 * 330.00456 * 22 20 18 26 26 C 1.38906 * 120.00543 * 359.76976 * 16 15 14 27 27 C 1.38004 * 119.99807 * 359.97438 * 26 16 15 28 28 H 1.09005 * 109.46850 * 60.00217 * 1 2 3 29 29 H 1.08995 * 109.47117 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46880 * 300.00269 * 1 2 3 31 31 H 1.08999 * 109.47334 * 240.00354 * 2 1 3 32 32 H 1.08998 * 109.47227 * 119.99823 * 2 1 3 33 33 H 1.07992 * 119.99967 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.99887 * 180.02562 * 5 4 3 35 35 H 1.07993 * 119.99446 * 179.97438 * 6 5 4 36 36 H 1.08004 * 119.99484 * 180.29870 * 7 6 5 37 37 H 1.08998 * 109.47448 * 324.99763 * 9 8 3 38 38 H 1.08999 * 109.47004 * 205.00198 * 9 8 3 39 39 H 0.97003 * 119.99720 * 5.20876 * 12 10 9 40 40 H 1.07998 * 120.00278 * 359.97438 * 14 13 12 41 41 H 1.07999 * 119.99906 * 180.21122 * 15 14 13 42 42 H 0.96995 * 120.00084 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.00302 * 179.97438 * 26 16 15 44 44 H 1.07995 * 120.00157 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0379 -1.1928 5 6 2.8210 3.3413 -1.1928 6 6 2.9535 4.0276 0.0001 7 6 2.6200 3.4124 1.1919 8 6 2.1644 2.1072 1.1924 9 6 1.8064 1.4344 2.4926 10 6 2.9861 0.6379 2.9874 11 8 4.0160 0.6179 2.3470 12 7 2.8968 -0.0525 4.1415 13 6 4.0241 -0.7030 4.6571 14 6 3.8796 -1.8963 5.3535 15 6 4.9914 -2.5399 5.8576 16 6 6.2539 -1.9894 5.6774 17 8 7.3472 -2.6200 6.1779 18 6 8.5262 -1.9742 6.0766 19 1 8.5579 -0.9648 5.6935 20 6 9.6980 -2.6055 6.4642 21 7 9.6595 -3.8353 6.9304 22 14 11.3316 -1.7104 6.3245 23 1 11.6029 -0.9758 7.5863 24 1 12.4164 -2.6950 6.0819 25 1 11.2741 -0.7487 5.1945 26 6 6.3980 -0.7934 4.9857 27 6 5.2868 -0.1524 4.4769 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2576 1.5017 -2.1245 34 1 3.0771 3.8234 -2.1246 35 1 3.3135 5.0458 0.0000 36 1 2.7190 3.9503 2.1233 37 1 0.9582 0.7682 2.3356 38 1 1.5425 2.1904 3.2322 39 1 2.0513 -0.0986 4.6148 40 1 2.8976 -2.3220 5.4975 41 1 4.8794 -3.4694 6.3960 42 1 10.4794 -4.2772 7.2013 43 1 7.3795 -0.3652 4.8460 44 1 5.3987 0.7776 3.9395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324383144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:19 Heat of formation + Delta-G solvation = -39.845296 kcal Electronic energy + Delta-G solvation = -26158.879895 eV Core-core repulsion = 22426.629170 eV Total energy + Delta-G solvation = -3732.250725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66015 -40.69431 -39.89776 -38.10915 -35.36431 -35.20301 -34.19255 -33.49863 -31.87079 -30.47514 -29.92690 -28.23535 -27.17255 -24.74599 -24.09959 -23.49798 -22.67054 -21.64808 -21.01820 -19.95008 -19.16930 -18.12415 -17.97639 -17.20300 -17.08538 -16.37357 -16.20742 -16.00259 -15.60082 -15.46467 -15.38505 -15.04900 -14.66032 -14.62105 -14.34998 -14.20704 -13.98716 -13.82259 -13.61529 -13.31315 -13.22789 -12.99199 -12.80967 -12.67663 -12.62542 -12.48857 -12.15367 -12.14777 -11.69253 -11.55050 -11.37240 -11.17243 -10.87784 -10.51943 -9.84977 -9.68290 -9.47100 -8.59278 -8.48420 -6.14851 0.41965 0.51265 0.52696 0.55186 1.33594 1.41372 1.50700 1.70128 2.15943 2.19627 2.81529 2.91368 3.15010 3.50610 3.64430 3.86181 3.93795 4.02735 4.09639 4.10895 4.15982 4.30747 4.35493 4.47725 4.50471 4.53997 4.63878 4.65483 4.73413 4.75942 4.78566 5.03738 5.06503 5.09636 5.12205 5.18363 5.24212 5.34184 5.41263 5.44271 5.59338 5.60264 5.64033 5.69600 5.75470 6.00944 6.15581 6.17011 6.58981 6.96527 7.29475 7.76246 8.74653 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.002565 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.821545 B =10915.096272 C =11828.270264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.078 4.078 4 C -0.135 4.135 5 C -0.126 4.126 6 C -0.137 4.137 7 C -0.119 4.119 8 C -0.081 4.081 9 C -0.094 4.094 10 C 0.507 3.493 11 O -0.562 6.562 12 N -0.651 5.651 13 C 0.067 3.933 14 C -0.079 4.079 15 C -0.179 4.179 16 C 0.105 3.895 17 O -0.228 6.228 18 C -0.413 4.413 19 H 0.095 0.905 20 C -0.020 4.020 21 N -0.918 5.918 22 Si 1.015 2.985 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.228 4.228 27 C -0.077 4.077 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.427 0.573 40 H 0.168 0.832 41 H 0.129 0.871 42 H 0.273 0.727 43 H 0.114 0.886 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.428 13.828 -12.064 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.078 4.078 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.155 4.155 7 C -0.137 4.137 8 C -0.082 4.082 9 C -0.133 4.133 10 C 0.296 3.704 11 O -0.440 6.440 12 N -0.298 5.298 13 C -0.027 4.027 14 C -0.098 4.098 15 C -0.199 4.199 16 C 0.054 3.946 17 O -0.134 6.134 18 C -0.489 4.489 19 H 0.113 0.887 20 C -0.218 4.218 21 N -0.556 5.556 22 Si 0.835 3.165 23 H -0.185 1.185 24 H -0.193 1.193 25 H -0.182 1.182 26 C -0.248 4.248 27 C -0.097 4.097 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.266 0.734 40 H 0.186 0.814 41 H 0.147 0.853 42 H 0.082 0.918 43 H 0.131 0.869 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.589 13.481 -12.348 28.290 hybrid contribution 1.064 0.101 0.172 1.083 sum -20.525 13.582 -12.176 27.459 Atomic orbital electron populations 1.21741 0.92687 1.02631 1.02735 1.20578 0.97602 0.92011 1.02433 1.19946 0.98499 0.96297 0.93049 1.21259 1.00363 0.95726 0.97914 1.21421 0.99185 0.94834 0.98964 1.21379 1.00577 1.01000 0.92579 1.21274 0.98585 0.94774 0.99049 1.19334 1.00751 0.94351 0.93724 1.20776 0.95977 1.00526 0.95983 1.21333 0.90271 0.79214 0.79617 1.90762 1.33347 1.62949 1.56917 1.43220 1.11873 1.51046 1.23694 1.17378 0.87080 0.94874 1.03338 1.20792 0.98917 0.92197 0.97924 1.20344 0.89321 1.02776 1.07475 1.19937 0.88983 0.92454 0.93192 1.83942 1.14496 1.44195 1.70782 1.21736 0.82446 0.99205 1.45534 0.88718 1.26518 1.02691 0.96837 0.95740 1.70175 1.30049 1.13534 1.41860 0.84637 0.74691 0.77614 0.79595 1.18521 1.19314 1.18239 1.21069 0.99516 0.98421 1.05812 1.20766 0.91526 0.99297 0.98119 0.92245 0.91333 0.91495 0.91348 0.92353 0.85073 0.84373 0.84469 0.84966 0.85157 0.84833 0.73373 0.81414 0.85317 0.91757 0.86859 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.72 71.98 0.70 -0.98 16 2 C -0.09 -1.59 5.38 29.85 0.16 -1.43 16 3 C -0.08 -1.62 5.13 -19.86 -0.10 -1.72 16 4 C -0.13 -2.67 9.68 22.27 0.22 -2.45 16 5 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 6 C -0.14 -2.58 10.05 22.27 0.22 -2.36 16 7 C -0.12 -2.35 9.68 22.27 0.22 -2.14 16 8 C -0.08 -1.64 4.37 -19.86 -0.09 -1.73 16 9 C -0.09 -1.43 5.17 29.10 0.15 -1.28 16 10 C 0.51 12.54 6.76 87.66 0.59 13.13 16 11 O -0.56 -20.15 13.74 -3.07 -0.04 -20.19 16 12 N -0.65 -14.61 5.34 -303.37 -1.62 -16.23 16 13 C 0.07 2.19 6.28 38.16 0.24 2.43 16 14 C -0.08 -2.47 9.96 22.38 0.22 -2.25 16 15 C -0.18 -7.41 9.98 22.37 0.22 -7.19 16 16 C 0.10 5.35 6.65 22.59 0.15 5.50 16 17 O -0.23 -13.91 9.75 -22.83 -0.22 -14.14 16 18 C -0.41 -24.80 9.44 67.91 0.64 -24.16 16 19 H 0.10 5.35 5.29 -2.91 -0.02 5.33 16 20 C -0.02 -1.17 5.49 84.82 0.47 -0.71 16 21 N -0.92 -56.97 13.67 21.61 0.30 -56.68 16 22 Si 1.02 44.20 29.55 68.60 2.03 46.23 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 C -0.23 -10.87 9.13 22.37 0.20 -10.66 16 27 C -0.08 -3.11 8.65 22.38 0.19 -2.92 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.65 6.80 -2.39 -0.02 0.63 16 31 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 32 H 0.06 1.20 6.42 -2.39 -0.02 1.19 16 33 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.13 1.31 5.62 -2.39 -0.01 1.29 16 38 H 0.13 1.23 8.05 -2.39 -0.02 1.22 16 39 H 0.43 5.42 8.82 -92.71 -0.82 4.60 16 40 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.11 5.62 5.71 -2.91 -0.02 5.60 16 44 H 0.12 4.82 6.43 -2.91 -0.02 4.80 16 Total: -1.00 -81.22 369.08 5.29 -75.93 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.22 Total: 28.10 kcal Atomic # 6 Polarization: -47.66 SS G_CDS: 4.63 Total: -43.03 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.33 Total: -72.91 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.26 Total: -34.33 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -81.22 5.29 -75.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324383144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.080 kcal (2) G-P(sol) polarization free energy of solvation -81.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds