Wall clock time and date at job start Tue Mar 31 2020 14:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30989 * 119.05803 * 2 1 4 4 C 1.33527 * 121.84454 * 180.02562 * 3 2 1 5 5 C 1.40715 * 120.96825 * 179.97438 * 4 3 2 6 6 C 1.36073 * 119.73711 * 179.12181 * 5 4 3 7 7 C 1.39353 * 121.04801 * 0.90637 * 6 5 4 8 8 C 1.36260 * 120.84026 * 359.39592 * 7 6 5 9 9 C 1.40086 * 119.64486 * 0.02562 * 8 7 6 10 10 C 1.41823 * 121.37605 * 180.02562 * 9 8 7 11 11 C 1.47785 * 121.11675 * 359.97438 * 10 9 8 12 12 O 1.21461 * 119.99734 * 274.58592 * 11 10 9 13 13 O 1.34717 * 120.00112 * 94.59524 * 11 10 9 14 14 C 1.45203 * 117.00167 * 185.08517 * 13 11 10 15 15 C 1.52991 * 109.47062 * 184.85037 * 14 13 11 16 16 C 1.50698 * 115.55366 * 305.29699 * 15 14 13 17 17 H 1.07999 * 120.00537 * 275.46579 * 16 15 14 18 18 C 1.37886 * 119.99870 * 95.18454 * 16 15 14 19 19 N 1.31513 * 119.99919 * 175.61167 * 18 16 15 20 20 Si 1.86800 * 119.99620 * 355.61144 * 18 16 15 21 21 H 1.48500 * 109.47217 * 95.02317 * 20 18 16 22 22 H 1.48507 * 109.46895 * 215.02096 * 20 18 16 23 23 H 1.48506 * 109.47334 * 335.01630 * 20 18 16 24 24 C 1.53002 * 117.50027 * 90.97341 * 15 14 13 25 25 C 1.53007 * 117.49616 * 159.63076 * 15 14 13 26 26 C 1.38949 * 117.76382 * 179.72404 * 10 9 8 27 27 C 1.50702 * 120.21516 * 180.26925 * 26 10 9 28 28 H 1.09004 * 109.47332 * 269.98418 * 1 2 3 29 29 H 1.09000 * 109.46816 * 29.98526 * 1 2 3 30 30 H 1.08996 * 109.47311 * 149.98774 * 1 2 3 31 31 H 1.08004 * 120.12793 * 359.97438 * 5 4 3 32 32 H 1.07992 * 119.47344 * 180.28373 * 6 5 4 33 33 H 1.08004 * 119.57757 * 179.42990 * 7 6 5 34 34 H 1.08001 * 120.17314 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47035 * 64.84873 * 14 13 11 36 36 H 1.09003 * 109.46494 * 304.85316 * 14 13 11 37 37 H 0.97004 * 119.99191 * 180.02562 * 19 18 16 38 38 H 1.09003 * 117.50087 * 215.00150 * 24 15 14 39 39 H 1.08999 * 117.49820 * 0.02562 * 24 15 14 40 40 H 1.08996 * 117.50318 * 359.97438 * 25 15 14 41 41 H 1.08999 * 117.49642 * 144.97391 * 25 15 14 42 42 H 1.09006 * 109.47039 * 89.99644 * 27 26 10 43 43 H 1.08996 * 109.46933 * 209.99776 * 27 26 10 44 44 H 1.08995 * 109.47035 * 329.99911 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1432 1.1450 0.0000 4 6 3.4769 1.2099 -0.0005 5 6 4.1415 2.4503 -0.0010 6 6 5.5016 2.4873 0.0166 7 6 6.2526 1.3134 0.0163 8 6 5.6435 0.0945 0.0107 9 6 4.2447 0.0189 0.0046 10 6 3.5728 -1.2300 -0.0008 11 6 4.3251 -2.5020 -0.0007 12 8 4.7107 -2.9796 -1.0488 13 8 4.5831 -3.1320 1.1618 14 6 5.4227 -4.3150 1.0984 15 6 5.5039 -4.9575 2.4845 16 6 5.9617 -4.0491 3.5963 17 1 7.0168 -3.8999 3.7721 18 6 5.0334 -3.4037 4.3856 19 7 5.4304 -2.6798 5.4093 20 14 3.2120 -3.5577 4.0008 21 1 2.6237 -4.6487 4.8187 22 1 2.5291 -2.2778 4.3182 23 1 3.0351 -3.8690 2.5595 24 6 4.4665 -6.0281 2.8288 25 6 5.9189 -6.4284 2.5580 26 6 2.1833 -1.2175 -0.0007 27 6 1.4132 -2.5129 -0.0002 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5140 31 1 3.5741 3.3693 -0.0015 32 1 6.0072 3.4415 0.0207 33 1 7.3311 1.3705 0.0212 34 1 6.2361 -0.8084 0.0110 35 1 6.4229 -4.0334 0.7693 36 1 4.9948 -5.0267 0.3924 37 1 4.7772 -2.2262 5.9648 38 1 4.1149 -6.0752 3.8595 39 1 3.7263 -6.2749 2.0677 40 1 6.1336 -6.9384 1.6189 41 1 6.5233 -6.7388 3.4103 42 1 1.2276 -2.8248 1.0277 43 1 0.4626 -2.3705 -0.5140 44 1 1.9925 -3.2801 -0.5137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327483084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:17 Heat of formation + Delta-G solvation = -1.069317 kcal Electronic energy + Delta-G solvation = -28014.342503 eV Core-core repulsion = 24283.773230 eV Total energy + Delta-G solvation = -3730.569273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23341 -39.71551 -37.65277 -37.21439 -35.51676 -34.12321 -32.69170 -32.08980 -30.90111 -28.04872 -27.83978 -27.04817 -25.44605 -24.11997 -22.59862 -22.43365 -21.80226 -20.30213 -19.18426 -18.22310 -17.53218 -17.20274 -16.83909 -16.23517 -15.43915 -15.27159 -15.04086 -14.81623 -14.68926 -14.11486 -13.96570 -13.52557 -13.34345 -13.22101 -12.99417 -12.88214 -12.75152 -12.68732 -12.37522 -12.15141 -11.96394 -11.61926 -11.36376 -11.25658 -11.21218 -11.02194 -10.59541 -10.46233 -10.34446 -10.27966 -10.06899 -9.59258 -9.44617 -9.17604 -8.61123 -8.60603 -8.52578 -8.24486 -6.11681 -4.16841 0.18802 0.73685 1.81406 2.26618 2.76823 2.96444 3.34696 3.43359 3.53704 3.98888 4.06132 4.47487 4.47732 4.58004 4.58749 4.64889 4.87072 4.93140 5.10233 5.15786 5.20902 5.26372 5.29338 5.36400 5.41916 5.55811 5.57268 5.63725 5.77973 5.80503 5.83204 5.87807 5.93924 5.98023 6.03482 6.05842 6.19865 6.28539 6.35168 6.41712 6.44709 6.56817 6.69708 6.77689 6.96252 7.00230 7.66529 7.81852 8.03308 8.43202 8.88358 9.52529 10.99162 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012220 B = 0.005129 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.839509 B = 5457.779848 C = 5885.220854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.161 3.839 3 N -0.463 5.463 4 C 0.131 3.869 5 C -0.093 4.093 6 C -0.099 4.099 7 C -0.109 4.109 8 C -0.090 4.090 9 C -0.069 4.069 10 C -0.039 4.039 11 C 0.507 3.493 12 O -0.506 6.506 13 O -0.306 6.306 14 C 0.105 3.895 15 C -0.004 4.004 16 C -0.491 4.491 17 H 0.078 0.922 18 C 0.087 3.913 19 N -0.895 5.895 20 Si 0.879 3.121 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.238 1.238 24 C -0.199 4.199 25 C -0.167 4.167 26 C -0.096 4.096 27 C -0.124 4.124 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.264 0.736 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 5.943 -11.942 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.008 3.992 3 N -0.171 5.171 4 C 0.009 3.991 5 C -0.111 4.111 6 C -0.119 4.119 7 C -0.126 4.126 8 C -0.109 4.109 9 C -0.072 4.072 10 C -0.048 4.048 11 C 0.349 3.651 12 O -0.396 6.396 13 O -0.220 6.220 14 C 0.032 3.968 15 C -0.005 4.005 16 C -0.528 4.528 17 H 0.096 0.904 18 C -0.117 4.117 19 N -0.532 5.532 20 Si 0.708 3.292 21 H -0.215 1.215 22 H -0.225 1.225 23 H -0.162 1.162 24 C -0.236 4.236 25 C -0.204 4.204 26 C -0.098 4.098 27 C -0.181 4.181 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.954 6.721 -12.063 15.461 hybrid contribution -0.284 -0.901 -0.012 0.945 sum -7.239 5.819 -12.075 15.234 Atomic orbital electron populations 1.20871 0.88076 1.03860 1.03744 1.21215 0.97205 0.86888 0.93919 1.67594 1.08735 1.28418 1.12395 1.18711 0.88715 0.92624 0.99052 1.20762 0.94216 0.95897 1.00261 1.20928 0.93667 0.98734 0.98531 1.20960 1.00655 0.91916 0.99115 1.20984 0.92534 0.99141 0.98212 1.18546 0.94928 0.91916 1.01763 1.19473 0.93205 0.91227 1.00860 1.20989 0.77009 0.83739 0.83324 1.90827 1.50019 1.65511 1.33239 1.86988 1.62772 1.41063 1.31214 1.22955 0.92227 0.83070 0.98558 1.19366 0.99832 0.88328 0.93002 1.20116 0.94861 1.26131 1.11655 0.90406 1.24943 0.99120 0.93813 0.93775 1.69898 1.34806 1.31916 1.16548 0.86856 0.85369 0.76349 0.80612 1.21470 1.22520 1.16165 1.23016 0.91923 1.07169 1.01525 1.22899 0.97558 0.98488 1.01480 1.20799 0.92173 0.97536 0.99308 1.21002 1.00191 0.92992 1.03886 0.89724 0.90037 0.89958 0.84471 0.85001 0.85025 0.85300 0.91390 0.93062 0.92617 0.89160 0.90668 0.90699 0.88732 0.89515 0.89761 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.74 36.01 0.35 -0.75 16 2 C 0.16 2.37 6.78 -82.57 -0.56 1.81 16 3 N -0.46 -7.38 10.19 -7.25 -0.07 -7.45 16 4 C 0.13 2.14 6.61 -84.87 -0.56 1.58 16 5 C -0.09 -1.23 9.99 -39.42 -0.39 -1.63 16 6 C -0.10 -1.16 9.94 -39.94 -0.40 -1.56 16 7 C -0.11 -1.43 9.96 -39.88 -0.40 -1.83 16 8 C -0.09 -1.48 9.42 -39.60 -0.37 -1.85 16 9 C -0.07 -1.24 5.76 -106.51 -0.61 -1.85 16 10 C -0.04 -0.72 5.82 -104.36 -0.61 -1.33 16 11 C 0.51 10.18 4.75 34.63 0.16 10.34 16 12 O -0.51 -10.49 16.80 -19.23 -0.32 -10.82 16 13 O -0.31 -6.76 6.94 -40.54 -0.28 -7.04 16 14 C 0.11 2.21 5.44 37.15 0.20 2.41 16 15 C 0.00 -0.10 1.37 -155.66 -0.21 -0.31 16 16 C -0.49 -13.43 9.21 -34.44 -0.32 -13.75 16 17 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 18 C 0.09 2.47 5.47 -17.82 -0.10 2.38 16 19 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 20 Si 0.88 21.85 23.59 -169.99 -4.01 17.84 16 21 H -0.29 -7.02 7.08 56.52 0.40 -6.62 16 22 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 23 H -0.24 -5.48 5.11 56.52 0.29 -5.19 16 24 C -0.20 -4.11 7.24 -26.69 -0.19 -4.31 16 25 C -0.17 -3.22 9.96 -26.69 -0.27 -3.49 16 26 C -0.10 -1.55 5.94 -103.97 -0.62 -2.17 16 27 C -0.12 -1.68 9.23 36.01 0.33 -1.35 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.66 5.89 -51.93 -0.31 0.35 16 31 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.13 2.17 7.23 -52.49 -0.38 1.79 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.05 0.98 7.92 -51.93 -0.41 0.57 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.09 1.98 6.55 -51.93 -0.34 1.64 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 0.82 5.91 -51.93 -0.31 0.52 16 44 H 0.07 1.02 7.14 -51.93 -0.37 0.65 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -33.06 361.57 -9.04 -42.10 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.01 Total: 3.98 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -4.56 Total: -17.65 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.70 Total: -33.86 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.60 Total: -17.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.01 Total: 17.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.06 -9.04 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327483084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.032 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds