Wall clock time and date at job start Tue Mar 31 2020 14:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30989 * 119.05803 * 2 1 4 4 C 1.33527 * 121.84454 * 180.02562 * 3 2 1 5 5 C 1.40715 * 120.96825 * 179.97438 * 4 3 2 6 6 C 1.36073 * 119.73711 * 179.12181 * 5 4 3 7 7 C 1.39353 * 121.04801 * 0.90637 * 6 5 4 8 8 C 1.36260 * 120.84026 * 359.39592 * 7 6 5 9 9 C 1.40086 * 119.64486 * 0.02562 * 8 7 6 10 10 C 1.41823 * 121.37605 * 180.02562 * 9 8 7 11 11 C 1.47785 * 121.11675 * 359.97438 * 10 9 8 12 12 O 1.21461 * 119.99734 * 274.58592 * 11 10 9 13 13 O 1.34717 * 120.00112 * 94.59524 * 11 10 9 14 14 C 1.45203 * 117.00167 * 185.08517 * 13 11 10 15 15 C 1.52991 * 109.47062 * 184.85037 * 14 13 11 16 16 C 1.50698 * 115.55366 * 305.29699 * 15 14 13 17 17 H 1.07999 * 120.00537 * 275.46579 * 16 15 14 18 18 C 1.37886 * 119.99870 * 95.18454 * 16 15 14 19 19 N 1.31513 * 119.99919 * 175.61167 * 18 16 15 20 20 Si 1.86800 * 119.99620 * 355.61144 * 18 16 15 21 21 H 1.48500 * 109.47217 * 95.02317 * 20 18 16 22 22 H 1.48507 * 109.46895 * 215.02096 * 20 18 16 23 23 H 1.48506 * 109.47334 * 335.01630 * 20 18 16 24 24 C 1.53002 * 117.50027 * 90.97341 * 15 14 13 25 25 C 1.53007 * 117.49616 * 159.63076 * 15 14 13 26 26 C 1.38949 * 117.76382 * 179.72404 * 10 9 8 27 27 C 1.50702 * 120.21516 * 180.26925 * 26 10 9 28 28 H 1.09004 * 109.47332 * 269.98418 * 1 2 3 29 29 H 1.09000 * 109.46816 * 29.98526 * 1 2 3 30 30 H 1.08996 * 109.47311 * 149.98774 * 1 2 3 31 31 H 1.08004 * 120.12793 * 359.97438 * 5 4 3 32 32 H 1.07992 * 119.47344 * 180.28373 * 6 5 4 33 33 H 1.08004 * 119.57757 * 179.42990 * 7 6 5 34 34 H 1.08001 * 120.17314 * 180.02562 * 8 7 6 35 35 H 1.09002 * 109.47035 * 64.84873 * 14 13 11 36 36 H 1.09003 * 109.46494 * 304.85316 * 14 13 11 37 37 H 0.97004 * 119.99191 * 180.02562 * 19 18 16 38 38 H 1.09003 * 117.50087 * 215.00150 * 24 15 14 39 39 H 1.08999 * 117.49820 * 0.02562 * 24 15 14 40 40 H 1.08996 * 117.50318 * 359.97438 * 25 15 14 41 41 H 1.08999 * 117.49642 * 144.97391 * 25 15 14 42 42 H 1.09006 * 109.47039 * 89.99644 * 27 26 10 43 43 H 1.08996 * 109.46933 * 209.99776 * 27 26 10 44 44 H 1.08995 * 109.47035 * 329.99911 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1432 1.1450 0.0000 4 6 3.4769 1.2099 -0.0005 5 6 4.1415 2.4503 -0.0010 6 6 5.5016 2.4873 0.0166 7 6 6.2526 1.3134 0.0163 8 6 5.6435 0.0945 0.0107 9 6 4.2447 0.0189 0.0046 10 6 3.5728 -1.2300 -0.0008 11 6 4.3251 -2.5020 -0.0007 12 8 4.7107 -2.9796 -1.0488 13 8 4.5831 -3.1320 1.1618 14 6 5.4227 -4.3150 1.0984 15 6 5.5039 -4.9575 2.4845 16 6 5.9617 -4.0491 3.5963 17 1 7.0168 -3.8999 3.7721 18 6 5.0334 -3.4037 4.3856 19 7 5.4304 -2.6798 5.4093 20 14 3.2120 -3.5577 4.0008 21 1 2.6237 -4.6487 4.8187 22 1 2.5291 -2.2778 4.3182 23 1 3.0351 -3.8690 2.5595 24 6 4.4665 -6.0281 2.8288 25 6 5.9189 -6.4284 2.5580 26 6 2.1833 -1.2175 -0.0007 27 6 1.4132 -2.5129 -0.0002 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5140 31 1 3.5741 3.3693 -0.0015 32 1 6.0072 3.4415 0.0207 33 1 7.3311 1.3705 0.0212 34 1 6.2361 -0.8084 0.0110 35 1 6.4229 -4.0334 0.7693 36 1 4.9948 -5.0267 0.3924 37 1 4.7772 -2.2262 5.9648 38 1 4.1149 -6.0752 3.8595 39 1 3.7263 -6.2749 2.0677 40 1 6.1336 -6.9384 1.6189 41 1 6.5233 -6.7388 3.4103 42 1 1.2276 -2.8248 1.0277 43 1 0.4626 -2.3705 -0.5140 44 1 1.9925 -3.2801 -0.5137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327483084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:16 Heat of formation + Delta-G solvation = -20.033981 kcal Electronic energy + Delta-G solvation = -28015.164872 eV Core-core repulsion = 24283.773230 eV Total energy + Delta-G solvation = -3731.391642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.46285 -41.19302 -38.92833 -38.68542 -37.15790 -35.31243 -34.25436 -33.73153 -31.96322 -29.33809 -28.97503 -28.36415 -27.45613 -25.46863 -23.68562 -23.55495 -23.38793 -21.70860 -21.04695 -19.42093 -18.92787 -18.64395 -18.42744 -17.75758 -17.09246 -16.65238 -16.49767 -16.09574 -15.83034 -15.63675 -15.20548 -14.86136 -14.72773 -14.47045 -14.36025 -14.27576 -13.95242 -13.94424 -13.81504 -13.57941 -13.09015 -12.98274 -12.78870 -12.64236 -12.37585 -12.26012 -12.19874 -12.13010 -12.09307 -11.76256 -11.51815 -11.48341 -11.01035 -10.79507 -10.64142 -10.32412 -9.70181 -9.38619 -8.32276 -6.39972 -0.98874 -0.38450 0.62818 0.74552 1.22377 1.37117 1.55164 1.59916 1.76407 2.39255 2.85853 3.01175 3.04455 3.07713 3.34888 3.43674 3.47192 3.57620 3.83332 3.93555 4.01069 4.14576 4.16094 4.21544 4.24883 4.30289 4.36005 4.36896 4.44747 4.57233 4.67723 4.73343 4.79679 4.80116 4.87654 4.90727 4.93429 4.96590 5.07612 5.09919 5.24625 5.31789 5.33963 5.42526 5.44346 5.64319 5.75103 6.21976 6.45692 6.66985 6.68356 7.32603 8.82206 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012220 B = 0.005129 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.839509 B = 5457.779848 C = 5885.220854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.152 3.848 3 N -0.469 5.469 4 C 0.107 3.893 5 C -0.094 4.094 6 C -0.090 4.090 7 C -0.097 4.097 8 C -0.130 4.130 9 C -0.094 4.094 10 C -0.081 4.081 11 C 0.516 3.484 12 O -0.520 6.520 13 O -0.329 6.329 14 C 0.108 3.892 15 C -0.038 4.038 16 C -0.486 4.486 17 H 0.034 0.966 18 C 0.031 3.969 19 N -0.947 5.947 20 Si 0.934 3.066 21 H -0.277 1.277 22 H -0.311 1.311 23 H -0.211 1.211 24 C -0.193 4.193 25 C -0.143 4.143 26 C -0.098 4.098 27 C -0.124 4.124 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.163 0.837 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.783 6.151 -13.763 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.001 4.001 3 N -0.178 5.178 4 C -0.014 4.014 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.114 4.114 8 C -0.149 4.149 9 C -0.096 4.096 10 C -0.090 4.090 11 C 0.360 3.640 12 O -0.411 6.411 13 O -0.244 6.244 14 C 0.035 3.965 15 C -0.039 4.039 16 C -0.523 4.523 17 H 0.052 0.948 18 C -0.167 4.167 19 N -0.586 5.586 20 Si 0.761 3.239 21 H -0.203 1.203 22 H -0.240 1.240 23 H -0.133 1.133 24 C -0.229 4.229 25 C -0.180 4.180 26 C -0.100 4.100 27 C -0.181 4.181 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.181 0.819 32 H 0.194 0.806 33 H 0.176 0.824 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.143 0.857 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.069 6.901 -13.909 17.981 hybrid contribution 0.527 -0.901 0.549 1.180 sum -8.542 6.000 -13.360 16.954 Atomic orbital electron populations 1.21029 0.84597 1.05720 1.04870 1.21946 0.99328 0.86029 0.92844 1.67695 1.08531 1.29005 1.12540 1.19162 0.89185 0.93269 0.99824 1.21173 0.95097 0.95676 0.99318 1.21401 0.93229 0.99861 0.96464 1.21385 1.02243 0.91319 0.96485 1.21020 0.92439 0.99893 1.01557 1.18802 0.95628 0.92400 1.02733 1.19650 0.94514 0.90688 1.04111 1.21207 0.76438 0.83885 0.82477 1.90786 1.50733 1.66124 1.33458 1.86957 1.63166 1.41708 1.32587 1.22868 0.92424 0.83391 0.97784 1.19282 1.03148 0.89176 0.92304 1.20299 0.92827 1.26415 1.12779 0.94816 1.25754 1.03597 0.93678 0.93626 1.70045 1.36133 1.34102 1.18352 0.85996 0.80060 0.75835 0.82034 1.20329 1.23982 1.13319 1.23062 0.93065 1.05210 1.01602 1.22977 0.96500 0.95403 1.03082 1.21249 0.91482 0.99378 0.97912 1.21119 1.01576 0.91276 1.04106 0.88714 0.88846 0.87454 0.81928 0.80573 0.82381 0.87336 0.91844 0.90461 0.92863 0.90680 0.87611 0.86808 0.89318 0.89684 0.85673 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.74 71.24 0.69 -1.11 16 2 C 0.15 4.24 6.78 42.93 0.29 4.53 16 3 N -0.47 -14.47 10.19 -176.85 -1.80 -16.27 16 4 C 0.11 3.47 6.61 40.35 0.27 3.73 16 5 C -0.09 -2.34 9.99 22.37 0.22 -2.12 16 6 C -0.09 -1.91 9.94 22.03 0.22 -1.69 16 7 C -0.10 -2.48 9.96 22.08 0.22 -2.26 16 8 C -0.13 -4.46 9.42 22.26 0.21 -4.25 16 9 C -0.09 -3.43 5.76 -21.09 -0.12 -3.55 16 10 C -0.08 -3.07 5.82 -19.70 -0.11 -3.18 16 11 C 0.52 21.11 4.75 70.35 0.33 21.44 16 12 O -0.52 -21.91 16.80 19.96 0.34 -21.57 16 13 O -0.33 -14.66 6.94 -56.26 -0.39 -15.05 16 14 C 0.11 4.48 5.44 71.98 0.39 4.87 16 15 C -0.04 -1.71 1.37 -52.93 -0.07 -1.78 16 16 C -0.49 -27.56 9.21 25.60 0.24 -27.32 16 17 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 18 C 0.03 1.85 5.47 84.66 0.46 2.31 16 19 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 20 Si 0.93 45.69 23.59 68.60 1.62 47.31 16 21 H -0.28 -12.93 7.08 99.48 0.70 -12.22 16 22 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 23 H -0.21 -9.27 5.11 99.48 0.51 -8.76 16 24 C -0.19 -7.46 7.24 30.62 0.22 -7.24 16 25 C -0.14 -5.17 9.96 30.62 0.30 -4.87 16 26 C -0.10 -3.09 5.94 -19.44 -0.12 -3.21 16 27 C -0.12 -3.10 9.23 71.24 0.66 -2.44 16 28 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.11 1.26 5.89 -2.39 -0.01 1.25 16 31 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.11 3.99 7.23 -2.91 -0.02 3.97 16 35 H 0.06 2.60 8.14 -2.39 -0.02 2.59 16 36 H 0.08 2.77 7.92 -2.39 -0.02 2.75 16 37 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 38 H 0.07 3.15 6.55 -2.39 -0.02 3.14 16 39 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.13 1.98 5.91 -2.39 -0.01 1.96 16 44 H 0.06 1.61 7.14 -2.39 -0.02 1.59 16 Total: -1.00 -77.19 361.57 5.19 -72.00 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.82 Total: 21.59 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.31 Total: -28.12 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.50 Total: -76.16 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.06 Total: -36.62 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.62 Total: 47.31 kcal Total: -77.19 5.19 -72.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327483084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.967 kcal (2) G-P(sol) polarization free energy of solvation -77.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds