Wall clock time and date at job start Tue Mar 31 2020 14:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 C 1.52992 * 109.47505 * 120.00407 * 2 1 3 5 5 C 1.50698 * 109.47483 * 174.99598 * 4 2 1 6 6 N 1.29403 * 124.70351 * 89.97039 * 5 4 2 7 7 C 1.30912 * 117.46261 * 180.02562 * 6 5 4 8 8 C 1.36752 * 113.93841 * 0.02562 * 7 6 5 9 9 C 1.46494 * 126.17898 * 179.97438 * 8 7 6 10 10 O 1.21621 * 119.99813 * 180.02562 * 9 8 7 11 11 O 1.34870 * 120.00290 * 0.03012 * 9 8 7 12 12 C 1.45206 * 117.00238 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47091 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47392 * 300.00313 * 13 12 11 15 15 C 1.52997 * 109.46978 * 60.00270 * 13 12 11 16 16 C 1.52996 * 109.46891 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.46946 * 180.02562 * 16 13 12 18 18 H 1.07998 * 120.00275 * 0.02562 * 17 16 13 19 19 C 1.37884 * 119.99709 * 179.97438 * 17 16 13 20 20 N 1.31511 * 119.99896 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99653 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46868 * 90.00364 * 21 19 17 23 23 H 1.48498 * 109.47184 * 210.00256 * 21 19 17 24 24 H 1.48498 * 109.47171 * 330.00230 * 21 19 17 25 25 S 1.70922 * 124.71045 * 270.30614 * 5 4 2 26 26 H 1.09008 * 109.46864 * 299.99384 * 1 2 3 27 27 H 1.08992 * 109.47692 * 59.99547 * 1 2 3 28 28 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46394 * 240.00216 * 2 1 3 30 30 H 1.08999 * 109.47087 * 60.00046 * 3 2 1 31 31 H 1.09000 * 109.46989 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47133 * 300.00490 * 3 2 1 33 33 H 1.09005 * 109.47567 * 54.99276 * 4 2 1 34 34 H 1.09002 * 109.46830 * 295.00073 * 4 2 1 35 35 H 1.08005 * 123.02779 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47157 * 299.99664 * 12 11 9 37 37 H 1.09004 * 109.47122 * 59.99797 * 12 11 9 38 38 H 1.09002 * 109.47722 * 59.99815 * 14 13 12 39 39 H 1.09000 * 109.47250 * 179.97438 * 14 13 12 40 40 H 1.09004 * 109.46862 * 299.99865 * 14 13 12 41 41 H 1.08998 * 109.47624 * 59.99457 * 15 13 12 42 42 H 1.09000 * 109.47140 * 179.97438 * 15 13 12 43 43 H 1.09002 * 109.47045 * 299.99833 * 15 13 12 44 44 H 1.09001 * 109.47372 * 300.00036 * 16 13 12 45 45 H 1.08996 * 109.47261 * 60.00575 * 16 13 12 46 46 H 0.97007 * 119.99539 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.8295 1.1887 6 7 4.3637 0.0511 1.6618 7 6 5.6444 -0.1867 1.5313 8 6 5.9283 -1.3638 0.8957 9 6 7.2645 -1.8911 0.6084 10 8 7.3874 -2.9557 0.0333 11 8 8.3584 -1.1960 0.9816 12 6 9.6499 -1.7792 0.6648 13 6 10.7628 -0.8542 1.1613 14 6 10.6368 0.5083 0.4770 15 6 10.6410 -0.6773 2.6762 16 6 12.1236 -1.4690 0.8281 17 6 13.2198 -0.5582 1.3177 18 1 12.9709 0.3665 1.8171 19 6 14.5407 -0.9060 1.1291 20 7 14.8438 -2.0322 0.5215 21 14 15.8995 0.2234 1.7354 22 1 16.2610 -0.1410 3.1290 23 1 17.0909 0.0782 0.8609 24 1 15.4269 1.6307 1.6984 25 16 4.3964 -2.1284 0.4785 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6054 -1.7199 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 6.4079 0.4861 1.8931 36 1 9.7395 -2.7501 1.1521 37 1 9.7369 -1.9049 -0.4145 38 1 9.6674 0.9462 0.7148 39 1 11.4295 1.1675 0.8312 40 1 10.7237 0.3823 -0.6022 41 1 10.7307 -1.6480 3.1638 42 1 11.4341 -0.0186 3.0300 43 1 9.6715 -0.2395 2.9140 44 1 12.2131 -2.4396 1.3160 45 1 12.2107 -1.5954 -0.2510 46 1 15.7731 -2.2766 0.3885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348349908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:08 Heat of formation + Delta-G solvation = -76.993292 kcal Electronic energy + Delta-G solvation = -24811.173682 eV Core-core repulsion = 21212.756050 eV Total energy + Delta-G solvation = -3598.417632 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47673 -39.76607 -37.23370 -36.76012 -35.40430 -32.37269 -31.54662 -28.87304 -27.54299 -27.22844 -26.42870 -26.31885 -24.77168 -23.26070 -22.13976 -20.83964 -19.99736 -18.51730 -18.00653 -17.47940 -16.41018 -16.27267 -15.99349 -15.43138 -15.29545 -14.90699 -14.54186 -14.25395 -13.99470 -13.65199 -13.51447 -13.15333 -12.91649 -12.67426 -12.43023 -12.41511 -12.30282 -12.07025 -11.83847 -11.59679 -11.36133 -11.29301 -11.18676 -10.98226 -10.88740 -10.80817 -10.62005 -10.37209 -10.34701 -10.22712 -9.90705 -9.80064 -9.74205 -9.24765 -9.18777 -8.96630 -8.37894 -6.02067 -4.03239 -0.12109 0.75799 1.33401 2.11759 2.87346 2.93335 3.30902 3.37723 3.40268 3.65861 4.32589 4.39786 4.43659 4.48034 4.71717 4.86939 5.05665 5.06825 5.12097 5.25557 5.32861 5.33507 5.45071 5.46836 5.47873 5.51678 5.68550 5.76971 5.80206 5.85924 5.97539 5.99276 6.16220 6.34594 6.49110 6.54495 6.69170 6.73635 7.09161 7.09381 7.11339 7.29556 7.59031 7.70540 7.79414 7.96350 8.37878 9.00970 9.59859 11.09507 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.032265 B = 0.002160 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.596610 B =12958.922050 C =13413.320588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.044 4.044 5 C 0.051 3.949 6 N -0.477 5.477 7 C 0.125 3.875 8 C -0.291 4.291 9 C 0.540 3.460 10 O -0.509 6.509 11 O -0.338 6.338 12 C 0.081 3.919 13 C -0.058 4.058 14 C -0.126 4.126 15 C -0.127 4.127 16 C 0.035 3.965 17 C -0.510 4.510 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 S 0.229 5.771 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.193 0.807 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.809 3.197 0.360 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.085 4.085 5 C -0.222 4.222 6 N -0.191 5.191 7 C -0.034 4.034 8 C -0.413 4.413 9 C 0.383 3.617 10 O -0.399 6.399 11 O -0.255 6.255 12 C 0.008 3.992 13 C -0.058 4.058 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.002 4.002 17 C -0.548 4.548 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 S 0.488 5.512 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.210 0.790 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -29.136 2.279 -0.137 29.226 hybrid contribution 1.803 0.922 0.541 2.096 sum -27.334 3.201 0.404 27.523 Atomic orbital electron populations 1.21831 0.94123 1.02044 1.02382 1.21148 0.96219 0.97135 0.96667 1.21859 1.01873 0.94990 1.01824 1.20515 0.84490 1.02655 1.00872 1.27617 1.01730 0.94026 0.98862 1.66190 1.02315 1.29732 1.20841 1.22759 0.92402 0.94028 0.94220 1.25115 0.96530 1.03414 1.16263 1.19340 0.84155 0.82250 0.75960 1.90903 1.87650 1.22042 1.39295 1.86562 1.15336 1.50086 1.73468 1.23619 0.77224 0.97553 1.00840 1.20832 0.94207 0.94948 0.95829 1.21723 1.00326 0.96745 0.99576 1.21726 1.00327 1.01417 0.94915 1.19131 0.87892 0.96093 0.97102 1.21144 0.90356 1.05887 1.37403 0.92046 1.25023 0.98889 0.95255 0.95409 1.69966 1.18314 1.22610 1.42540 0.86605 0.81686 0.81152 0.78626 1.20734 1.21329 1.19859 1.84042 0.94284 1.21629 1.51262 0.92263 0.92139 0.92412 0.90858 0.92242 0.92117 0.92714 0.89236 0.88205 0.78986 0.91332 0.91340 0.94206 0.91468 0.93713 0.93712 0.91473 0.94195 0.96298 0.96290 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.19 37.16 0.34 -0.26 16 2 C -0.09 -0.52 2.91 -90.62 -0.26 -0.78 16 3 C -0.15 -1.02 8.99 37.16 0.33 -0.68 16 4 C -0.04 -0.27 5.26 -27.89 -0.15 -0.41 16 5 C 0.05 0.46 5.87 -13.30 -0.08 0.38 16 6 N -0.48 -5.19 9.73 -11.26 -0.11 -5.30 16 7 C 0.12 1.45 11.20 -18.48 -0.21 1.24 16 8 C -0.29 -3.78 6.51 -36.79 -0.24 -4.02 16 9 C 0.54 8.69 7.92 34.06 0.27 8.96 16 10 O -0.51 -9.42 16.76 -19.36 -0.32 -9.74 16 11 O -0.34 -5.62 8.68 -40.96 -0.36 -5.98 16 12 C 0.08 1.49 4.33 37.16 0.16 1.65 16 13 C -0.06 -1.16 0.61 -154.51 -0.09 -1.25 16 14 C -0.13 -2.37 8.08 37.15 0.30 -2.07 16 15 C -0.13 -2.37 8.08 37.16 0.30 -2.07 16 16 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 17 C -0.51 -13.65 7.65 -34.44 -0.26 -13.91 16 18 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 21 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 S 0.23 2.32 23.00 -107.50 -2.47 -0.16 16 26 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.54 6.80 -51.93 -0.35 0.18 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.19 2.00 8.06 -52.48 -0.42 1.58 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 39 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.32 6.61 -51.93 -0.34 0.98 16 43 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 389.85 15.07 5.87 5.87 Total: -1.00 -30.80 389.85 -9.08 -39.88 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -7.61 Total: -4.13 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 0.20 Total: -11.03 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.63 Total: -30.99 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.68 Total: -15.72 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.47 Total: -0.16 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.80 -9.08 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348349908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.109 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds