Wall clock time and date at job start Tue Mar 31 2020 14:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 C 1.52992 * 109.47505 * 120.00407 * 2 1 3 5 5 C 1.50698 * 109.47483 * 174.99598 * 4 2 1 6 6 N 1.29403 * 124.70351 * 89.97039 * 5 4 2 7 7 C 1.30912 * 117.46261 * 180.02562 * 6 5 4 8 8 C 1.36752 * 113.93841 * 0.02562 * 7 6 5 9 9 C 1.46494 * 126.17898 * 179.97438 * 8 7 6 10 10 O 1.21621 * 119.99813 * 180.02562 * 9 8 7 11 11 O 1.34870 * 120.00290 * 0.03012 * 9 8 7 12 12 C 1.45206 * 117.00238 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47091 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47392 * 300.00313 * 13 12 11 15 15 C 1.52997 * 109.46978 * 60.00270 * 13 12 11 16 16 C 1.52996 * 109.46891 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.46946 * 180.02562 * 16 13 12 18 18 H 1.07998 * 120.00275 * 0.02562 * 17 16 13 19 19 C 1.37884 * 119.99709 * 179.97438 * 17 16 13 20 20 N 1.31511 * 119.99896 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99653 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46868 * 90.00364 * 21 19 17 23 23 H 1.48498 * 109.47184 * 210.00256 * 21 19 17 24 24 H 1.48498 * 109.47171 * 330.00230 * 21 19 17 25 25 S 1.70922 * 124.71045 * 270.30614 * 5 4 2 26 26 H 1.09008 * 109.46864 * 299.99384 * 1 2 3 27 27 H 1.08992 * 109.47692 * 59.99547 * 1 2 3 28 28 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46394 * 240.00216 * 2 1 3 30 30 H 1.08999 * 109.47087 * 60.00046 * 3 2 1 31 31 H 1.09000 * 109.46989 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47133 * 300.00490 * 3 2 1 33 33 H 1.09005 * 109.47567 * 54.99276 * 4 2 1 34 34 H 1.09002 * 109.46830 * 295.00073 * 4 2 1 35 35 H 1.08005 * 123.02779 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47157 * 299.99664 * 12 11 9 37 37 H 1.09004 * 109.47122 * 59.99797 * 12 11 9 38 38 H 1.09002 * 109.47722 * 59.99815 * 14 13 12 39 39 H 1.09000 * 109.47250 * 179.97438 * 14 13 12 40 40 H 1.09004 * 109.46862 * 299.99865 * 14 13 12 41 41 H 1.08998 * 109.47624 * 59.99457 * 15 13 12 42 42 H 1.09000 * 109.47140 * 179.97438 * 15 13 12 43 43 H 1.09002 * 109.47045 * 299.99833 * 15 13 12 44 44 H 1.09001 * 109.47372 * 300.00036 * 16 13 12 45 45 H 1.08996 * 109.47261 * 60.00575 * 16 13 12 46 46 H 0.97007 * 119.99539 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.8295 1.1887 6 7 4.3637 0.0511 1.6618 7 6 5.6444 -0.1867 1.5313 8 6 5.9283 -1.3638 0.8957 9 6 7.2645 -1.8911 0.6084 10 8 7.3874 -2.9557 0.0333 11 8 8.3584 -1.1960 0.9816 12 6 9.6499 -1.7792 0.6648 13 6 10.7628 -0.8542 1.1613 14 6 10.6368 0.5083 0.4770 15 6 10.6410 -0.6773 2.6762 16 6 12.1236 -1.4690 0.8281 17 6 13.2198 -0.5582 1.3177 18 1 12.9709 0.3665 1.8171 19 6 14.5407 -0.9060 1.1291 20 7 14.8438 -2.0322 0.5215 21 14 15.8995 0.2234 1.7354 22 1 16.2610 -0.1410 3.1290 23 1 17.0909 0.0782 0.8609 24 1 15.4269 1.6307 1.6984 25 16 4.3964 -2.1284 0.4785 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6054 -1.7199 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 6.4079 0.4861 1.8931 36 1 9.7395 -2.7501 1.1521 37 1 9.7369 -1.9049 -0.4145 38 1 9.6674 0.9462 0.7148 39 1 11.4295 1.1675 0.8312 40 1 10.7237 0.3823 -0.6022 41 1 10.7307 -1.6480 3.1638 42 1 11.4341 -0.0186 3.0300 43 1 9.6715 -0.2395 2.9140 44 1 12.2131 -2.4396 1.3160 45 1 12.2107 -1.5954 -0.2510 46 1 15.7731 -2.2766 0.3885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348349908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:07 Heat of formation + Delta-G solvation = -92.202409 kcal Electronic energy + Delta-G solvation = -24811.833199 eV Core-core repulsion = 21212.756050 eV Total energy + Delta-G solvation = -3599.077149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64864 -40.76066 -38.76299 -37.29787 -36.92765 -34.42268 -32.39502 -29.75627 -29.11826 -27.98914 -27.96985 -27.75765 -25.60491 -25.04784 -23.38551 -21.40846 -20.96534 -20.00313 -19.05646 -18.58635 -18.34589 -17.60307 -17.36426 -16.52091 -16.08094 -15.95537 -15.72822 -15.29958 -15.15657 -14.88309 -14.77487 -14.42760 -14.09635 -13.98395 -13.86656 -13.47452 -13.04239 -12.99190 -12.79424 -12.74278 -12.67961 -12.67625 -12.32969 -12.30317 -12.15168 -12.02793 -11.93340 -11.90539 -11.81252 -11.60471 -11.40684 -11.07804 -10.91781 -10.74877 -10.64170 -10.52898 -10.01563 -8.16008 -6.23646 -1.01559 -0.10516 0.50705 1.10149 1.42661 1.43149 1.53689 1.67684 1.82607 2.43892 2.94616 3.18589 3.56245 3.75849 3.88279 3.90758 3.91989 4.00674 4.04986 4.19957 4.33710 4.48482 4.57087 4.66182 4.69019 4.71724 4.83023 4.88580 4.95356 5.00822 5.05423 5.06131 5.12405 5.13697 5.27656 5.29291 5.41307 5.45342 5.45764 5.48254 5.49253 5.52373 5.73387 5.86790 6.26924 6.42633 6.53993 6.89968 7.43818 8.96519 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.032265 B = 0.002160 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.596610 B =12958.922050 C =13413.320588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.047 4.047 5 C 0.073 3.927 6 N -0.494 5.494 7 C 0.142 3.858 8 C -0.330 4.330 9 C 0.543 3.457 10 O -0.541 6.541 11 O -0.333 6.333 12 C 0.090 3.910 13 C -0.054 4.054 14 C -0.120 4.120 15 C -0.121 4.121 16 C 0.040 3.960 17 C -0.514 4.514 18 H 0.072 0.928 19 C -0.005 4.005 20 N -0.937 5.937 21 Si 0.961 3.039 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.260 1.260 25 S 0.246 5.754 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.203 0.797 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.057 0.943 43 H 0.067 0.933 44 H -0.009 1.009 45 H -0.009 1.009 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.284 4.804 1.364 31.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.088 4.088 5 C -0.200 4.200 6 N -0.208 5.208 7 C -0.018 4.018 8 C -0.452 4.452 9 C 0.388 3.612 10 O -0.434 6.434 11 O -0.249 6.249 12 C 0.017 3.983 13 C -0.054 4.054 14 C -0.178 4.178 15 C -0.178 4.178 16 C 0.003 3.997 17 C -0.552 4.552 18 H 0.090 0.910 19 C -0.202 4.202 20 N -0.578 5.578 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.184 1.184 25 S 0.506 5.494 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.219 0.781 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.009 0.991 45 H 0.009 0.991 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -31.640 3.895 0.872 31.891 hybrid contribution 2.390 0.431 0.215 2.438 sum -29.250 4.326 1.087 29.588 Atomic orbital electron populations 1.21805 0.92592 1.02915 1.02721 1.21146 0.97396 0.96099 0.96270 1.21860 1.00407 0.96099 1.02199 1.20786 0.82161 1.04448 1.01426 1.28270 1.02942 0.92640 0.96116 1.66306 1.02098 1.30333 1.22084 1.22972 0.93072 0.93277 0.92524 1.24938 0.95834 1.05087 1.19352 1.19766 0.84757 0.81714 0.74956 1.90884 1.88018 1.23464 1.41016 1.86529 1.14841 1.49885 1.73599 1.23247 0.78144 0.96823 1.00131 1.20635 0.92052 0.95529 0.97166 1.21658 1.01482 0.95606 0.99009 1.21662 1.01504 1.01140 0.93475 1.18986 0.90890 0.95000 0.94835 1.21532 0.90891 1.06220 1.36579 0.90962 1.25951 1.01727 0.96755 0.95746 1.70115 1.18768 1.24650 1.44242 0.85505 0.78307 0.79595 0.78004 1.20098 1.21433 1.18425 1.83984 0.92738 1.21582 1.51093 0.91765 0.92024 0.91296 0.91053 0.92009 0.94270 0.92295 0.86690 0.87268 0.78058 0.92130 0.92156 0.91433 0.92430 0.94270 0.94265 0.92394 0.91417 0.99109 0.99105 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.19 71.98 0.66 -0.10 16 2 C -0.09 -0.77 2.91 -10.80 -0.03 -0.81 16 3 C -0.15 -1.76 8.99 71.98 0.65 -1.12 16 4 C -0.05 -0.42 5.26 29.84 0.16 -0.27 16 5 C 0.07 1.16 5.87 88.47 0.52 1.68 16 6 N -0.49 -9.79 9.73 -189.53 -1.84 -11.64 16 7 C 0.14 3.08 11.20 84.48 0.95 4.03 16 8 C -0.33 -8.29 6.51 24.07 0.16 -8.14 16 9 C 0.54 17.43 7.92 69.97 0.55 17.98 16 10 O -0.54 -20.42 16.76 19.44 0.33 -20.09 16 11 O -0.33 -10.88 8.68 -57.84 -0.50 -11.38 16 12 C 0.09 3.40 4.33 71.98 0.31 3.71 16 13 C -0.05 -2.15 0.61 -52.19 -0.03 -2.19 16 14 C -0.12 -4.42 8.08 71.98 0.58 -3.84 16 15 C -0.12 -4.42 8.08 71.98 0.58 -3.84 16 16 C 0.04 2.06 4.04 29.85 0.12 2.18 16 17 C -0.51 -27.86 7.65 25.60 0.20 -27.66 16 18 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 19 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 20 N -0.94 -56.84 13.29 21.45 0.28 -56.56 16 21 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 S 0.25 4.63 23.00 -56.49 -1.30 3.33 16 26 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.64 6.80 -2.39 -0.02 0.62 16 32 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.20 3.81 8.06 -2.91 -0.02 3.78 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.07 2.09 7.68 -2.39 -0.02 2.07 16 39 H 0.06 2.21 6.62 -2.39 -0.02 2.19 16 40 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 2.22 6.61 -2.39 -0.02 2.20 16 43 H 0.07 2.09 7.68 -2.39 -0.02 2.07 16 44 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 46 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -67.53 389.85 5.78 -61.75 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.95 Total: 6.91 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 5.83 Total: -18.17 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -1.56 Total: -68.20 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.18 Total: -31.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.30 Total: 3.33 kcal Total: -67.53 5.78 -61.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348349908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.452 kcal (2) G-P(sol) polarization free energy of solvation -67.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds