Wall clock time and date at job start Tue Mar 31 2020 14:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47066 * 2 1 4 4 C 1.53007 * 109.47063 * 119.99546 * 2 1 3 5 5 C 1.50704 * 109.46906 * 304.99965 * 4 2 1 6 6 C 1.38225 * 120.00088 * 269.72398 * 5 4 2 7 7 C 1.38237 * 120.00274 * 179.76527 * 6 5 4 8 8 C 1.38233 * 119.99527 * 0.51339 * 7 6 5 9 9 C 1.38234 * 120.00275 * 359.74096 * 8 7 6 10 10 C 1.38233 * 119.99853 * 90.00266 * 5 4 2 11 11 C 1.50697 * 109.47249 * 239.99571 * 2 1 3 12 12 O 1.21286 * 120.00008 * 265.00498 * 11 2 1 13 13 N 1.34775 * 119.99795 * 85.00111 * 11 2 1 14 14 C 1.39938 * 119.99622 * 174.87046 * 13 11 2 15 15 C 1.39299 * 119.94741 * 146.38104 * 14 13 11 16 16 C 1.38484 * 120.42700 * 179.97438 * 15 14 13 17 17 C 1.37688 * 120.32514 * 0.02562 * 16 15 14 18 18 C 1.40742 * 119.88117 * 0.02562 * 17 16 15 19 19 C 1.41410 * 120.20605 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99916 * 151.74104 * 19 18 17 21 21 C 1.39931 * 119.99781 * 331.73940 * 19 18 17 22 22 N 1.30828 * 120.00300 * 349.00913 * 21 19 18 23 23 Si 1.86808 * 119.99773 * 169.01107 * 21 19 18 24 24 H 1.48507 * 109.46866 * 59.99797 * 23 21 19 25 25 H 1.48498 * 109.47087 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46868 * 300.00095 * 23 21 19 27 27 C 1.38240 * 119.94793 * 326.10476 * 14 13 11 28 28 H 1.09002 * 109.47507 * 300.00677 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00465 * 1 2 3 30 30 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 31 31 H 0.96700 * 114.00090 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47244 * 185.00049 * 4 2 1 33 33 H 1.08996 * 109.46740 * 64.99759 * 4 2 1 34 34 H 1.08001 * 120.00448 * 0.02562 * 6 5 4 35 35 H 1.07997 * 120.00431 * 180.22726 * 7 6 5 36 36 H 1.08004 * 120.00214 * 179.71743 * 8 7 6 37 37 H 1.08001 * 120.00140 * 179.97438 * 9 8 7 38 38 H 1.08003 * 120.00076 * 359.97438 * 10 5 4 39 39 H 0.96997 * 120.00151 * 354.86750 * 13 11 2 40 40 H 1.07993 * 119.78288 * 359.97438 * 15 14 13 41 41 H 1.07999 * 119.83664 * 180.02562 * 16 15 14 42 42 H 1.07994 * 120.05440 * 179.97438 * 17 16 15 43 43 H 0.97004 * 119.99812 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.16491 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.4391 -0.0857 2.4766 6 6 2.0908 0.9600 3.1030 7 6 1.5372 1.5461 4.2259 8 6 0.3371 1.0794 4.7286 9 6 -0.3121 0.0302 4.1053 10 6 0.2389 -0.5524 2.9793 11 6 2.0323 -0.7105 -1.2304 12 8 2.3207 -1.8873 -1.1758 13 7 2.1611 -0.0382 -2.3913 14 6 2.7277 -0.6678 -3.5053 15 6 2.2798 -0.3511 -4.7857 16 6 2.8339 -0.9677 -5.8950 17 6 3.8343 -1.9017 -5.7440 18 6 4.2962 -2.2325 -4.4564 19 6 5.3229 -3.1912 -4.2934 20 1 5.9836 -3.1352 -3.4409 21 6 5.4828 -4.2123 -5.2367 22 7 4.5635 -4.4130 -6.1457 23 14 7.0088 -5.2891 -5.1979 24 1 7.0858 -5.9917 -3.8918 25 1 6.9373 -6.2887 -6.2937 26 1 8.2161 -4.4431 -5.3768 27 6 3.7351 -1.5987 -3.3336 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.9703 1.4236 -0.0004 32 1 3.1263 -0.6443 1.2953 33 1 1.7516 -1.7714 1.2057 34 1 3.0305 1.3220 2.7127 35 1 2.0446 2.3656 4.7132 36 1 -0.0933 1.5343 5.6086 37 1 -1.2496 -0.3347 4.4983 38 1 -0.2683 -1.3722 2.4923 39 1 1.8609 0.8820 -2.4548 40 1 1.4953 0.3799 -4.9141 41 1 2.4797 -0.7147 -6.8834 42 1 4.2630 -2.3802 -6.6121 43 1 4.6746 -5.1207 -6.7998 44 1 4.0865 -1.8414 -2.3416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362451351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:38 Heat of formation + Delta-G solvation = -45.103646 kcal Electronic energy + Delta-G solvation = -26660.706586 eV Core-core repulsion = 22928.227841 eV Total energy + Delta-G solvation = -3732.478744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53017 -39.27072 -37.62616 -36.62169 -34.54008 -33.29953 -32.90970 -31.12143 -30.47652 -29.82512 -28.12483 -27.05012 -25.31454 -23.84182 -22.65634 -21.69678 -20.97793 -20.52470 -19.61293 -18.11085 -17.60101 -16.72306 -15.92693 -15.71535 -15.38720 -15.23824 -15.15381 -14.86037 -14.61476 -14.35336 -13.81755 -13.54582 -13.14169 -12.99261 -12.92834 -12.74929 -12.54850 -12.29358 -12.09160 -11.93558 -11.77740 -11.68327 -11.31991 -11.16501 -11.11401 -11.08064 -10.80099 -10.65144 -10.50790 -10.07436 -9.76863 -9.41321 -9.12377 -9.03578 -8.89645 -8.71247 -7.43270 -6.91156 -6.66805 -4.35546 1.20366 1.27241 2.50418 2.83347 3.09126 3.12513 3.18048 3.28471 3.43620 3.71193 3.97563 4.02173 4.55227 4.66206 4.69221 4.79735 4.84699 4.92466 4.97314 5.05462 5.32579 5.38104 5.58170 5.63589 5.66950 5.70521 5.77148 5.91148 5.98067 6.02876 6.23234 6.32032 6.36666 6.37400 6.51352 6.74514 6.86638 6.98026 7.01725 7.06121 7.24968 7.32568 7.56351 7.70963 7.96300 8.07139 8.16186 8.24585 8.60348 8.70236 8.93754 8.97492 10.26627 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.002721 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.735575 B =10287.230167 C =11124.146407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.130 3.870 3 O -0.547 6.547 4 C -0.097 4.097 5 C -0.068 4.068 6 C -0.104 4.104 7 C -0.121 4.121 8 C -0.127 4.127 9 C -0.122 4.122 10 C -0.115 4.115 11 C 0.478 3.522 12 O -0.509 6.509 13 N -0.658 5.658 14 C 0.147 3.853 15 C -0.258 4.258 16 C -0.094 4.094 17 C -0.167 4.167 18 C 0.119 3.881 19 C -0.458 4.458 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.801 5.801 23 Si 0.912 3.088 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.264 1.264 27 C -0.208 4.208 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.380 0.620 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.403 0.597 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.280 0.720 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 10.178 15.385 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.086 3.914 3 O -0.352 6.352 4 C -0.135 4.135 5 C -0.068 4.068 6 C -0.122 4.122 7 C -0.139 4.139 8 C -0.145 4.145 9 C -0.140 4.140 10 C -0.133 4.133 11 C 0.263 3.737 12 O -0.384 6.384 13 N -0.302 5.302 14 C 0.056 3.944 15 C -0.279 4.279 16 C -0.113 4.113 17 C -0.187 4.187 18 C 0.116 3.884 19 C -0.488 4.488 20 H 0.094 0.906 21 C -0.143 4.143 22 N -0.427 5.427 23 Si 0.736 3.264 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.189 1.189 27 C -0.230 4.230 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.228 0.772 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.238 0.762 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.091 0.909 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.203 9.292 15.265 19.268 hybrid contribution 0.960 -0.240 -0.119 0.996 sum -6.243 9.052 15.146 18.716 Atomic orbital electron populations 1.21834 0.90690 1.03273 1.03843 1.21338 0.96635 0.82228 0.91236 1.86556 1.27163 1.24691 1.96840 1.21121 1.00971 1.00944 0.90505 1.19686 0.95043 0.96171 0.95908 1.21018 0.99992 0.95715 0.95508 1.21120 0.96113 0.99954 0.96700 1.21116 0.95840 0.97431 1.00130 1.21115 0.99971 0.96810 0.96098 1.21115 0.95528 1.00228 0.96455 1.21293 0.79142 0.87927 0.85326 1.90790 1.47719 1.15271 1.84580 1.43457 1.60551 1.16018 1.10198 1.17473 0.94807 0.97267 0.84886 1.20074 1.07077 1.09266 0.91465 1.20494 0.97582 0.97304 0.95932 1.21417 1.00100 0.99001 0.98149 1.17503 0.90666 0.89877 0.90401 1.19501 1.13219 1.08657 1.07443 0.90636 1.25882 0.96809 0.97591 0.94036 1.69793 1.31268 1.27932 1.13709 0.86317 0.81892 0.79410 0.78764 1.19036 1.20357 1.18906 1.20941 0.99631 1.03960 0.98423 0.90290 0.91444 0.90474 0.77187 0.90130 0.88426 0.86202 0.86281 0.86421 0.86232 0.85993 0.76204 0.89265 0.88982 0.86048 0.90944 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.06 37.16 0.30 -1.31 16 2 C 0.13 1.64 1.00 -91.77 -0.09 1.55 16 3 O -0.55 -6.04 11.86 -35.23 -0.42 -6.46 16 4 C -0.10 -1.17 4.28 -27.88 -0.12 -1.29 16 5 C -0.07 -0.73 4.24 -104.63 -0.44 -1.18 16 6 C -0.10 -1.04 9.41 -39.59 -0.37 -1.41 16 7 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 8 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 9 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 10 C -0.12 -1.16 7.85 -39.58 -0.31 -1.47 16 11 C 0.48 8.28 6.42 -10.99 -0.07 8.21 16 12 O -0.51 -11.11 13.70 5.55 0.08 -11.03 16 13 N -0.66 -11.66 5.22 -9.91 -0.05 -11.71 16 14 C 0.15 3.31 6.26 -83.76 -0.52 2.79 16 15 C -0.26 -5.69 9.97 -39.10 -0.39 -6.08 16 16 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 17 C -0.17 -4.39 8.66 -38.84 -0.34 -4.72 16 18 C 0.12 3.25 5.55 -106.85 -0.59 2.66 16 19 C -0.46 -12.55 9.06 -37.74 -0.34 -12.89 16 20 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 21 C 0.07 1.89 5.25 -17.35 -0.09 1.80 16 22 N -0.80 -21.23 10.82 55.55 0.60 -20.63 16 23 Si 0.91 19.21 29.57 -169.99 -5.03 14.19 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 27 C -0.21 -5.34 8.39 -38.68 -0.32 -5.66 16 28 H 0.08 0.85 6.14 -51.93 -0.32 0.53 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.38 3.29 9.04 45.56 0.41 3.70 16 32 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.10 1.28 7.63 -51.93 -0.40 0.89 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 1.11 8.03 -52.48 -0.42 0.69 16 39 H 0.40 5.89 8.34 -40.82 -0.34 5.55 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.12 3.28 6.18 -52.49 -0.32 2.95 16 43 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 44 H 0.10 2.74 6.44 -52.49 -0.34 2.40 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -31.46 367.74 -9.66 -41.12 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -5.08 Total: 15.11 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -5.30 Total: -26.12 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.55 Total: -32.34 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.34 Total: -17.50 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.46 -9.66 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362451351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.988 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds