Wall clock time and date at job start Tue Mar 31 2020 14:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47066 * 2 1 4 4 C 1.53007 * 109.47063 * 119.99546 * 2 1 3 5 5 C 1.50704 * 109.46906 * 304.99965 * 4 2 1 6 6 C 1.38225 * 120.00088 * 269.72398 * 5 4 2 7 7 C 1.38237 * 120.00274 * 179.76527 * 6 5 4 8 8 C 1.38233 * 119.99527 * 0.51339 * 7 6 5 9 9 C 1.38234 * 120.00275 * 359.74096 * 8 7 6 10 10 C 1.38233 * 119.99853 * 90.00266 * 5 4 2 11 11 C 1.50697 * 109.47249 * 239.99571 * 2 1 3 12 12 O 1.21286 * 120.00008 * 265.00498 * 11 2 1 13 13 N 1.34775 * 119.99795 * 85.00111 * 11 2 1 14 14 C 1.39938 * 119.99622 * 174.87046 * 13 11 2 15 15 C 1.39299 * 119.94741 * 146.38104 * 14 13 11 16 16 C 1.38484 * 120.42700 * 179.97438 * 15 14 13 17 17 C 1.37688 * 120.32514 * 0.02562 * 16 15 14 18 18 C 1.40742 * 119.88117 * 0.02562 * 17 16 15 19 19 C 1.41410 * 120.20605 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99916 * 151.74104 * 19 18 17 21 21 C 1.39931 * 119.99781 * 331.73940 * 19 18 17 22 22 N 1.30828 * 120.00300 * 349.00913 * 21 19 18 23 23 Si 1.86808 * 119.99773 * 169.01107 * 21 19 18 24 24 H 1.48507 * 109.46866 * 59.99797 * 23 21 19 25 25 H 1.48498 * 109.47087 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46868 * 300.00095 * 23 21 19 27 27 C 1.38240 * 119.94793 * 326.10476 * 14 13 11 28 28 H 1.09002 * 109.47507 * 300.00677 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00465 * 1 2 3 30 30 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 31 31 H 0.96700 * 114.00090 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47244 * 185.00049 * 4 2 1 33 33 H 1.08996 * 109.46740 * 64.99759 * 4 2 1 34 34 H 1.08001 * 120.00448 * 0.02562 * 6 5 4 35 35 H 1.07997 * 120.00431 * 180.22726 * 7 6 5 36 36 H 1.08004 * 120.00214 * 179.71743 * 8 7 6 37 37 H 1.08001 * 120.00140 * 179.97438 * 9 8 7 38 38 H 1.08003 * 120.00076 * 359.97438 * 10 5 4 39 39 H 0.96997 * 120.00151 * 354.86750 * 13 11 2 40 40 H 1.07993 * 119.78288 * 359.97438 * 15 14 13 41 41 H 1.07999 * 119.83664 * 180.02562 * 16 15 14 42 42 H 1.07994 * 120.05440 * 179.97438 * 17 16 15 43 43 H 0.97004 * 119.99812 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.16491 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.4391 -0.0857 2.4766 6 6 2.0908 0.9600 3.1030 7 6 1.5372 1.5461 4.2259 8 6 0.3371 1.0794 4.7286 9 6 -0.3121 0.0302 4.1053 10 6 0.2389 -0.5524 2.9793 11 6 2.0323 -0.7105 -1.2304 12 8 2.3207 -1.8873 -1.1758 13 7 2.1611 -0.0382 -2.3913 14 6 2.7277 -0.6678 -3.5053 15 6 2.2798 -0.3511 -4.7857 16 6 2.8339 -0.9677 -5.8950 17 6 3.8343 -1.9017 -5.7440 18 6 4.2962 -2.2325 -4.4564 19 6 5.3229 -3.1912 -4.2934 20 1 5.9836 -3.1352 -3.4409 21 6 5.4828 -4.2123 -5.2367 22 7 4.5635 -4.4130 -6.1457 23 14 7.0088 -5.2891 -5.1979 24 1 7.0858 -5.9917 -3.8918 25 1 6.9373 -6.2887 -6.2937 26 1 8.2161 -4.4431 -5.3768 27 6 3.7351 -1.5987 -3.3336 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.9703 1.4236 -0.0004 32 1 3.1263 -0.6443 1.2953 33 1 1.7516 -1.7714 1.2057 34 1 3.0305 1.3220 2.7127 35 1 2.0446 2.3656 4.7132 36 1 -0.0933 1.5343 5.6086 37 1 -1.2496 -0.3347 4.4983 38 1 -0.2683 -1.3722 2.4923 39 1 1.8609 0.8820 -2.4548 40 1 1.4953 0.3799 -4.9141 41 1 2.4797 -0.7147 -6.8834 42 1 4.2630 -2.3802 -6.6121 43 1 4.6746 -5.1207 -6.7998 44 1 4.0865 -1.8414 -2.3416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362451351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:37 Heat of formation + Delta-G solvation = -64.283654 kcal Electronic energy + Delta-G solvation = -26661.538293 eV Core-core repulsion = 22928.227841 eV Total energy + Delta-G solvation = -3733.310452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81863 -40.26468 -39.17570 -37.90593 -36.27326 -34.83987 -34.09075 -31.85903 -31.77051 -31.39623 -29.84921 -27.93807 -27.28092 -25.11924 -23.37042 -23.05669 -22.69199 -21.79397 -20.95589 -19.62756 -19.14487 -17.63554 -17.35050 -17.05794 -16.79401 -16.57212 -16.42267 -15.98061 -15.95602 -15.73505 -15.19340 -14.72867 -14.60129 -14.23803 -14.07251 -13.91098 -13.62156 -13.57274 -13.46928 -13.16542 -13.07134 -12.97846 -12.84238 -12.75338 -12.55154 -12.24383 -11.97283 -11.94790 -11.79119 -11.74620 -11.59859 -11.20940 -10.86342 -10.45065 -9.73830 -9.53844 -9.38701 -8.75227 -8.59251 -6.40248 0.46673 0.56991 0.80658 0.97105 1.35382 1.46762 1.48254 1.67079 2.07430 2.20992 2.74172 2.92912 3.05785 3.45149 3.70411 3.78802 3.82972 4.00295 4.11518 4.22663 4.35707 4.44117 4.48066 4.59304 4.69160 4.69646 4.75580 4.83715 4.89482 5.01889 5.07487 5.09084 5.11161 5.18375 5.20070 5.23542 5.31566 5.62988 5.68588 5.71691 5.76200 5.81944 6.05534 6.09113 6.17607 6.32361 6.39383 6.65397 6.67630 6.92291 6.98476 7.22715 8.35825 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.002721 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.735575 B =10287.230167 C =11124.146407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.150 3.850 3 O -0.540 6.540 4 C -0.092 4.092 5 C -0.081 4.081 6 C -0.115 4.115 7 C -0.127 4.127 8 C -0.129 4.129 9 C -0.127 4.127 10 C -0.127 4.127 11 C 0.478 3.522 12 O -0.557 6.557 13 N -0.648 5.648 14 C 0.154 3.846 15 C -0.248 4.248 16 C -0.093 4.093 17 C -0.193 4.193 18 C 0.087 3.913 19 C -0.500 4.500 20 H 0.067 0.933 21 C 0.032 3.968 22 N -0.832 5.832 23 Si 0.985 3.015 24 H -0.265 1.265 25 H -0.264 1.264 26 H -0.257 1.257 27 C -0.231 4.231 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.392 0.608 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.422 0.578 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.287 0.713 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.823 11.941 16.487 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.105 3.895 3 O -0.347 6.347 4 C -0.130 4.130 5 C -0.081 4.081 6 C -0.133 4.133 7 C -0.145 4.145 8 C -0.147 4.147 9 C -0.145 4.145 10 C -0.145 4.145 11 C 0.265 3.735 12 O -0.434 6.434 13 N -0.294 5.294 14 C 0.061 3.939 15 C -0.269 4.269 16 C -0.112 4.112 17 C -0.213 4.213 18 C 0.084 3.916 19 C -0.530 4.530 20 H 0.085 0.915 21 C -0.182 4.182 22 N -0.458 5.458 23 Si 0.806 3.194 24 H -0.190 1.190 25 H -0.188 1.188 26 H -0.181 1.181 27 C -0.253 4.253 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.242 0.758 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.260 0.740 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.329 11.114 16.379 21.475 hybrid contribution 1.190 -0.658 -0.380 1.412 sum -7.140 10.456 15.999 20.403 Atomic orbital electron populations 1.21857 0.89461 1.03457 1.04698 1.21118 0.97259 0.82384 0.88717 1.86552 1.28429 1.23205 1.96548 1.21018 1.00908 1.00010 0.91084 1.19588 0.95724 0.97012 0.95767 1.21199 1.00426 0.95656 0.96012 1.21418 0.96370 1.00344 0.96342 1.21468 0.95596 0.97034 1.00602 1.21397 1.00723 0.96752 0.95610 1.21257 0.95522 1.00588 0.97146 1.22273 0.77586 0.87481 0.86175 1.90777 1.49577 1.17765 1.85323 1.43384 1.59996 1.16754 1.09222 1.17550 0.93478 0.96075 0.86813 1.20500 1.06936 1.08936 0.90573 1.20858 0.96296 0.96010 0.98032 1.21382 1.01966 1.00755 0.97187 1.17856 0.91495 0.90688 0.91521 1.19732 1.14393 1.10378 1.08541 0.91489 1.26745 0.99845 0.98449 0.93152 1.69850 1.32870 1.28771 1.14334 0.85219 0.77666 0.77569 0.78996 1.18976 1.18771 1.18087 1.20908 1.01345 1.05809 0.97200 0.88984 0.90949 0.90730 0.75821 0.90430 0.90220 0.85407 0.84312 0.84121 0.84297 0.85756 0.73980 0.85251 0.85924 0.87572 0.90197 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.06 71.98 0.58 -2.39 16 2 C 0.15 3.64 1.00 -11.54 -0.01 3.63 16 3 O -0.54 -10.85 11.86 -148.98 -1.77 -12.61 16 4 C -0.09 -2.21 4.28 29.85 0.13 -2.08 16 5 C -0.08 -1.66 4.24 -19.87 -0.08 -1.74 16 6 C -0.11 -2.11 9.41 22.27 0.21 -1.90 16 7 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 8 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 9 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 10 C -0.13 -2.40 7.85 22.27 0.17 -2.23 16 11 C 0.48 16.52 6.42 87.66 0.56 17.09 16 12 O -0.56 -25.22 13.70 -3.05 -0.04 -25.26 16 13 N -0.65 -22.26 5.22 -303.65 -1.58 -23.84 16 14 C 0.15 6.89 6.26 38.10 0.24 7.13 16 15 C -0.25 -10.50 9.97 22.58 0.23 -10.28 16 16 C -0.09 -4.29 10.02 22.20 0.22 -4.06 16 17 C -0.19 -10.44 8.66 22.75 0.20 -10.25 16 18 C 0.09 5.01 5.55 -21.31 -0.12 4.89 16 19 C -0.50 -28.92 9.06 23.46 0.21 -28.71 16 20 H 0.07 3.80 7.87 -2.91 -0.02 3.77 16 21 C 0.03 1.68 5.25 85.25 0.45 2.13 16 22 N -0.83 -45.50 10.82 21.82 0.24 -45.26 16 23 Si 0.99 40.35 29.57 68.60 2.03 42.38 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 27 C -0.23 -12.33 8.39 22.85 0.19 -12.14 16 28 H 0.09 1.78 6.14 -2.39 -0.01 1.77 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.39 6.07 9.04 -74.06 -0.67 5.40 16 32 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 33 H 0.08 2.19 7.63 -2.39 -0.02 2.17 16 34 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 35 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.12 2.19 8.03 -2.91 -0.02 2.17 16 39 H 0.42 11.27 8.34 -92.71 -0.77 10.49 16 40 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 42 H 0.11 5.97 6.18 -2.91 -0.02 5.96 16 43 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 44 H 0.09 4.85 6.44 -2.91 -0.02 4.83 16 Total: -1.00 -71.27 367.74 2.32 -68.96 By element: Atomic # 1 Polarization: 42.19 SS G_CDS: -0.41 Total: 41.78 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 3.85 Total: -46.14 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.35 Total: -69.10 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.81 Total: -37.87 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -71.27 2.32 -68.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362451351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.675 kcal (2) G-P(sol) polarization free energy of solvation -71.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds